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2023

• Article
  S. V. Kovalchuk, C. de Mulatier, D. Groen, M. Paszyński, V. V. Krzhizhanovskaya, J. Dongarra, and P. M. A. Sloot. The computational planet. Journal of Computational Science 72, 102102.
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• Article
  D. Groen, H. Arabnejad, D. Suleimenova, W. Edeling, Erwan Raffin, Y. Xue, K. Bronik, N. Monnier, and P. V. Coveney. FabSim3: An automation toolkit for verified simulations using high performance computing. Computer Physics Communications 283, 108596.
  Abstract Citation Links

2022

• Proceedings
  D. Groen, C. de Mulatier, M. Paszynski, V. V. Krzhizhanovskaya, J. J. Dongarra, and P. M. A. Sloot. Preface. In: Computational Science – ICCS 2022. ISBN 9783031087578. III, pp. v-vi.
  Citation Links
• Proceedings
  D. Groen, C. de Mulatier, M. Paszynski, V. V. Krzhizhanovskaya, J. J. Dongarra, and P. M. A. Sloot. Preface. In: Computational Science – ICCS 2022. ISBN 9783031087547. II, pp. v-vi.
  Citation Links
• Proceedings
  D. Groen, C. de Mulatier, M. Paszynski, V. V. Krzhizhanovskaya, J. J. Dongarra, and P. M. A. Sloot. Preface. In: Computational Science – ICCS 2022. ISBN 9783031087516. I, pp. v-vi.
  Citation Links
• Proceedings
  D. Groen, C de Mulatier, M. Paszynski, V. V. Krzhizhanovskaya, J. J. Dongarra, and P. M. A. Sloot. Preface. In: Computational Science – ICCS 2022. ISBN 9783031087608. IV, pp. v-vi.
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2021

• Article
  D. Suleimenova, H. Arabnejad, W. N. Edeling, D. Coster, O. O. Luk, J. Lakhlili, V. Jancauskas, M. Kulczewski, L. Veen, D. Ye, P. Zun, V. Krzhizhanovskaya, A. Hoekstra, D. Crommelin, P. V. Coveney, and D. Groen. Tutorial applications for Verification, Validation and Uncertainty Quantification using VECMA toolkit. Journal of Computational Science 53, 101402.
  Abstract Citation Links
• Article
  D. Groen, H. Arabnejad, V. Jancauskas, W. N. Edeling, F. Jansson, R. A. Richardson, J. Lakhlili, L. Veen, B. Bosak, P. Kopta, D. W. Wright, N. Monnier, P. Karlshoefer, D. Suleimenova, R. Sinclair, M. Vassaux, A. Nikishova, M. Bieniek, O. O. Luk, M. Kulczewski, E. Raffin, D. Crommelin, O. Hoenen, D. P. Coster, and P. V. Coveney. VECMAtk: a scalable verification, validation and uncertainty quantification toolkit for scientific simulations. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 379(2197), 20200221.
  Abstract Citation Links
• Article
  W. Edeling, H. Arabnejad, R. Sinclair, D. Suleimenova, K. Gopalakrishnan, B. Bosak, D. Groen, I. Mahmood, D. Crommelin, and P. V. Coveney. The impact of uncertainty on predictions of the CovidSim epidemiological code. Nature Computational Science 1(2), pp. 128-135.
  Abstract Citation Links
• Article
  P. V. Coveney, D. Groen, and A. G. Hoekstra. Reliability and reproducibility in computational science: implementing validation, verification and uncertainty quantification in silico. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 379(2197), 20200409.
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2020

• Article
  D. W. Wright, R. A. Richardson, W. Edeling, J. Lakhlili, R. C. Sinclair, V. Jancauskas, D. Suleimenova, B. Bosak, M. Kulczewski, T. Piontek, P. Kopta, I. Chirca, H. Arabnejad, O. O. Luk, O. Hoenen, J. Węglarz, D. Crommelin, D. Groen, and P. V. Coveney. Building Confidence in Simulation: Applications of EasyVVUQ. Advanced Theory and Simulations 3(8), 1900246.
  Abstract Citation Links

2019

• Article
  S. Alowayyed, T. Piontek, J. L. Suter, O. Hoenen, D. Groen, O. Luk, B. Bosak, P. Kopta, K. Kurowski, O. Perks, K. Brabazon, V. Jancauskas, D. Coster, P. V. Coveney, and A. G. Hoekstra. Patterns for High Performance Multiscale Computing. Future Generation Computer Systems 91, pp. 335-346.
  Abstract Citation Links
• Proceedings
  D. Groen, R. A. Richardson, D. W. Wright, V. Jancauskas, R. Sinclair, P. Karlshoefer, M. Vassaux, H. Arabnejad, T. Piontek, P. Kopta, B. Bosak, J. Lakhlili, O. Hoenen, D. Suleimenova, W. Edeling, D. Crommelin, A. Nikishova, and P. V. Coveney. Introducing VECMAtk - Verification, Validation and Uncertainty Quantification for Multiscale and HPC Simulations. In: Computational Science – ICCS 2019 . ISBN 9783030227470. IV, pp. 479-492.
  Abstract Citation Links

2017

• Article
  D. Groen, B. Bosak, V. Krzhizhanovskaya, A. Hoekstra, and P. Koumoutsakos. Multiscale Modelling and Simulation, 14th International Workshop. Procedia Computer Science 108, pp. 1811-1812.
  Abstract Citation Links
• Article
  S. Alowayyed, D. Groen, P. V. Coveney, and A. G. Hoekstra. Multiscale computing in the exascale era. Journal of Computational Science 22, pp. 15-25.
  Abstract Citation Links

2016

• Article
  D. Groen, V. Krzhizhanovskaya, B. Bosak, T. Scheibe, and A. Hoekstra. Multiscale modelling and simulation, 13th international workshop. Procedia Computer Science 80, pp. 1242-1243.
  Abstract Citation Links
• Chapter
  A. Mizeranschi, D. Groen, J. Borgdorff, A. G. Hoekstra, B. Chopard, and W. Dubitzky. Anatomy and Physiology of Multiscale Modeling and Simulation in Systems Medicine. In: Systems Medicine. ISBN 9781493932832. pp. 375-404.
  Abstract Citation Links

2015

• Article
  V. V. Krzhizhanovskaya, D. Groen, B. Bosak, and A. G. Hoekstra. Multiscale Modelling and Simulation Workshop: 12 Years of Inspiration. Procedia Computer Science 51, pp. 1082-1087.
  Abstract Citation Links

2014

• Article
  J. Borgdorff, M. Mamonski, B. Bosak, K. Kurowski, M. Ben Belgacem, B. Chopard, D. Groen, P. V. Coveney, and A. G. Hoekstra. Distributed multiscale computing with MUSCLE 2, the Multiscale Coupling Library and Environment. Journal of Computational Science 5(5), pp. 719-731.
  Abstract Citation Links
• Article
  J. Borgdorff, M. Ben Belgacem, C. Bona-Casas, L. Fazendeiro, D. Groen, O. Hoenen, A. Mizeranschi, J. L. Sutter, D. Coster, P. V. Coveney, W. Dubitzky, A. G. Hoekstra, P. Strand, and B. Chopard. Performance of distributed multiscale simulations. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 372(2021), 20130407.
  Abstract Citation Links

2013

• Article
  D. Groen, J. Borgdorff, C. Bona-Casas, J. Hetherington, R. W. Nash, S. J. Zasada, I. Saverchenko, M. Mamonski, K. Kurowski, M. O. Bernabeu, A. G. Hoekstra, and P. V. Coveney. Flexible composition and execution of high performance, high fidelity multiscale biomedical simulations. Interface Focus 3(2), 20120087.
  Abstract Citation Links
• Article
  J. Borgdorff, M. Mamonski, B. Bosak, D. Groen, M. Ben Belgacem, K. Kurowski, and A. G. Hoekstra. Multiscale Computing with the Multiscale Modeling Library and Runtime Environment. Procedia Computer Science 18, pp. 1097-1105.
  Abstract Citation Links
• Article
  T. Ishiyama, S. Rieder, J. Makino, S. Portegies Zwart, D. Groen, K. Nitadori, C. de Laat, S. McMillan, K. Hiraki, and S. Harfst. The Cosmogrid simulation: Statistical properties of small dark matter halos. Astrophysical Journal 767(2), 146.
  Abstract Citation Links

2012

• Article
  J. Borgdorff, D. Groen, S. Ferlin, I. Saverchenko, J. Suter, A. G. Hoekstra, and P. V. Coveney. Multiscale Simulations on Distributed European e-Infrastructures. Inside 10(1), pp. 72-77.
  Citation Links
• Proceedings
  S. J. Zasada, M. Mamonski, D. Groen, J. Borgdorff, I. Saverchenko, T. Piontek, K. Kurowski, and P. V. Coveney. Distributed infrastructure for multiscale computing. In: 2012 IEEE/ACM 16th International Symposium on Distributed Simulation and Real Time Applications: DS-RET 2012: Proceedings. ISBN 9781467329545. pp. 65-74.
  Abstract Citation Links

2010

• Article
  S. Portegies Zwart, T. Ishiyama, D. Groen, K. Nitadori, J. Makino, C. de Laat, S. McMillan, K. Hiraki, S. Harfst, and P. Grosso. Simulating the universe on an intercontinental grid. Computer 43(8), pp. 63-70.
  Abstract Citation Links
• Article
  D. Groen, S. Rieder, P. Grosso, C. de Laat, and S. Portegies Zwart. A platform independent communication library for distributed computing. Procedia Computer Science 1(1), pp. 2693-2700.
  Abstract Citation Links
• PhD Thesis
  D. J. Groen. High performance N-body simulation on computational grids. Supervised by S. F. Portegies Zwart, P. M. A. Sloot, and E. P. J. van den Heuvel.
  Abstract Citation Links
• Article
  D. Groen, S. Harfst, and S. Portegies Zwart. The living application: A self-organizing system for complex grid tasks. International Journal of High Performance Computing Applications 24(2), pp. 185-193.
  Abstract Citation Links

2009

• Proceedings
  P. Bar, C. Coti, D. Groen, T. Herault, V. Kravtsov, A Schuster, and M. Swain. Running parallel applications with topology-aware grid middleware. In: Proceedings of the 2009 Fifth IEEE International Conference on e-Science. ISBN 9780769538778. pp. 292-299.
  Abstract Citation Links
• Proceedings
  D. Groen, S. Harfst, and S. Portegies Zwart. On the origin of grid species: The living application. In: Computational Science – ICCS 2009. ISBN 9783642019708. I, pp. 205-212.
  Abstract Citation Links

2008

• Article
  D. Groen, S. Portegies Zwart, S. McMillan, and J. Makino. Distributed N-body simulation on the grid using dedicated hardware. New Astronomy 13(5), pp. 348-358.
  Abstract Citation Links
• Proceedings
  D. Groen, S. Portegies Zwart, S. McMillan, and J. Makino. Simulating N-body systems on the grid using dedicated hardware. In: Computational Science – ICCS 2008. ISBN 9783540693840. I, pp. 86-95.
  Abstract Citation Links
• Proceedings
  S. Portegies Zwart, S. McMillan, B. Ó Nualláin, D. Heggie, J. Lombardi, P. Hut, S. Banerjee, H. Belkus, T. Fragos, J. Fregeau, M. Fuji, E. Gaburov, E. Glebbeek, D. Groen, S. Harfst, R. Izzard, M. Jurić, S. Justham, P. Teuben, J. van Bever, O. Yaron, and M. Zemp. A multiphysics and multiscale software environment for modeling astrophysical systems. In: Computational Science – ICCS 2008. ISBN 9783540693871. II, pp. 207-216.
  Abstract Citation Links
• Article
  S. Portegies Zwart, S. McMillan, D. Groen, A. Gualandris, M. Sipior, and W. Vermin. A parallel gravitational N-body kernel. New Astronomy 13(5), pp. 285-295.
  Abstract Citation Links

2006

• MSc Thesis
  D. J. Groen. Reliability Analysis of Grid Resources: A User Perspective. Supervised by G. D. van Albada, J. Templon, D. L. Groep, and A. Tirado-Ramos.
  Citation Links
• Proceedings
  V. V. Krzhizhanovskaya, V. V. Korkhov, A. Tirado-Ramos, D. J. Groen, I. V. Shoshmina, I. A. Valuev, I. V. Morozov, N. V. Malyshkin, Y. E. Gorbachev, and P. M. A. Sloot. Computational Engineering on the Grid: Crafting a Distributed Virtual Reactor. In: E-Science 2006 : Second IEEE International Conference on e-Science and Grid Computing. ISBN 9781424430116.
  Abstract Citation Links

2005

• Chapter
  A. Tirado Ramos, D. P. Shamonin, R. Shulakov, D. J. Groen, A. G. Hoekstra, G. D. van Albada, E. V. Zudilova-Seinstra, and P. M. A. Sloot. Interactive Problem Solving Environments on the Grid for Image-based Computational Haemodynamics. In: The CrossGrid Book.
  Citation Links
• Proceedings
  J. Gomes, M. David, J. Martins, L. Bernardo, A. Garcia, M. Hardt, H. Kornmayer, R. Marco, D. Rodriguez, I. Diaz, D. Cano, J. Salt, S. Gonzalez, J. Sanchez, F. Fassi, V. Lara, P. Nyczyk, P. Lason, A. Ozieblo, P. Wolniewicz, M. Bluj, K. Nawrocki, A. Padee, W. Wislicki, C. Fernandez, J. Fontan, Y. Cotronis, E. Floros, G. Tsouloupas, W. Xing, M. D. Dikaiakos, J. Astalos, B. Coghlan, E. Heymann, M. Senar, C. Kanellopoulos, A. Tirado Ramos, and D. J. Groen. Organization of the International Testbed of the CrossGrid Project. In: Cracow Grid Workshop 2005.
  Citation Links
• Proceedings
  A. Tirado Ramos, D. J. Groen, and P. M. A. Sloot. On-line Application Performance Monitoring of Blood Flow Simulation in Computational Grid Architectures. In: Proceedings 18th IEEE Symposium on Computer-Based Medical Systems. ISBN 0769523552, 9780769523552. pp. 511-516.
  Citation Links
• Article
  J. Gomes, M. David, J. Martins, L. Bernardo, A. Garcia, M. Hardt, H. Kornmayer, R. Marco, D. Rodriguez, I. Diaz, D. Cano, J. Salt, S. Gonzalez, J. Sanchez, F. Fassi, V. Lara, P. Nyczyk, P. Lason, A. Ozieblo, P. Wolniewicz, M. Bluj, K. Nawrocki, A. Padee, W. Wislicki, C. Fernandez, J. Fontan, Y. Cotronis, E. Floros, G. Tsouloupas, W. Xing, M. D. Dikaiakos, J. Astalos, B. Coghlan, E. Heymann, M. Senar, C. Kanellopoulos, A. Tirado Ramos, and D. J. Groen. Experience with the International Testbed in the CrossGrid Project. Lecture Notes in Computer Science 3470, pp. 98-110.
  Citation Links
• Proceedings
  A. Tirado Ramos, D. J. Groen, and P. M. A. Sloot. Exploring OGSA Interoperability with LCG-based Production Grids for Biomedical Applications. In: Cracow Grid Workshop 2005.
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