-
Proceedings
M. van der Kolk, C. Miller, R. Padmos, V. Azizi, and A. Hoekstra.
des-ist: A Simulation Framework to Streamline Event-Based In Silico Trials.
In:
Computational Science – ICCS 2021.
III, pp. 648-654.
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Article
D. Groen, H. Arabnejad, V. Jancauskas, W. N. Edeling, F. Jansson, R. A. Richardson, J. Lakhlili, L. Veen, B. Bosak, P. Kopta, D. W. Wright, N. Monnier, P. Karlshoefer, D. Suleimenova, R. Sinclair, M. Vassaux, A. Nikishova, M. Bieniek, O. O. Luk, M. Kulczewski, E. Raffin, D. Crommelin, O. Hoenen, D. P. Coster, and P. V. Coveney.
VECMAtk: a scalable verification, validation and uncertainty quantification toolkit for scientific simulations.
Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences
379(2197), 20200221.
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Article
L. Crielaard, M. Nicolaou, A. Sawyer, R. Quax, and K. Stronks.
Understanding the impact of exposure to adverse socioeconomic conditions on chronic stress from a complexity science perspective.
BMC Medicine
19, 242.
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Article
D. Ye, L. Veen, A. Nikishova, J. Lakhlili, W. Edeling, O. O. Luk, V. V. Krzhizhanovskaya, and A. G. Hoekstra.
Uncertainty quantification patterns for multiscale models.
Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences
379(2197), 20200072.
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Proceedings
C. Miller, M. van der Kolk, R. Padmos, T. Józsa, and A. Hoekstra.
Uncertainty Quantification of Coupled 1D Arterial Blood Flow and 3D Tissue Perfusion Models Using the INSIST Framework.
In:
Computational Science – ICCS 2021.
VI, pp. 691-697.
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Article
S. Achterhof and J. M. Meylahn.
Two-community noisy Kuramoto model with general interaction strengths. II.
Chaos
31(3), 033116.
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Article
S. Achterhof and J. M. Meylahn.
Two-community noisy Kuramoto model with general interaction strengths. I.
Chaos
31(3), 033115.
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Proceedings
R. M. Padmos, T. I. Józsa, W. K. El-Bouri, G. Závodszky, S. J. Payne, and A. G. Hoekstra.
Two-Way Coupling Between 1D Blood Flow and 3D Tissue Perfusion Models.
In:
Computational Science – ICCS 2021.
III, pp. 670-683.
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Article
D. Suleimenova, H. Arabnejad, W. N. Edeling, D. Coster, O. O. Luk, J. Lakhlili, V. Jancauskas, M. Kulczewski, L. Veen, D. Ye, P. Zun, V. Krzhizhanovskaya, A. Hoekstra, D. Crommelin, P. V. Coveney, and D. Groen.
Tutorial applications for Verification, Validation and Uncertainty Quantification using VECMA toolkit.
Journal of Computational Science
53, 101402.
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Article
UnYoung Chavez-Baldini, Dorien H Nieman, Amos Keestra, Anja Lok, Roel J T Mocking, Pelle de Koning, Valeria V Krzhizhanovskaya, Claudi L H Bockting, Geeske van Rooijen, Dirk J A Smit, Arjen L Sutterland, Karin J H Verweij, Guido van Wingen, Johanna T W Wigman, Nienke C Vulink, and Damiaan Denys.
The relationship between cognitive functioning and psychopathology in patients with psychiatric disorders.
Psychological Medicine
.
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Article
J. Nevin, M. Lees, and P. Groth.
The non-linear impact of data handling on network diffusion models.
Patterns
2(12), 100397.
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Article
Alexander Gheorghiu, Peter V. Coveney, and Alya A. Arabi.
The influence of external electric fields on proton transfer tautomerism in the guanine-cytosine base pair.
Physical Chemistry Chemical Physics
23(10), pp. 6252-6265.
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Article
W. Edeling, H. Arabnejad, R. Sinclair, D. Suleimenova, K. Gopalakrishnan, B. Bosak, D. Groen, I. Mahmood, D. Crommelin, and P. V. Coveney.
The impact of uncertainty on predictions of the CovidSim epidemiological code.
Nature Computational Science
1(2), pp. 128-135.
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Article
C. J. Spieker, G. Závodszky, C. Mouriaux, M. van der Kolk, C. Gachet, P. H. Mangin, and A. G. Hoekstra.
The Effects of Micro-vessel Curvature Induced Elongational Flows on Platelet Adhesion.
Annals of Biomedical Engineering
49(12), p. 3609–3620.
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Article
I. S. Kleinwächter, S. Pannwitt, A. Centi, N. Hellmann, E. Thines, T. Bereau, and D. Schneider.
The Bacteriostatic Activity of 2-Phenylethanol Derivatives Correlates with Membrane Binding Affinity.
Membranes
11(4), 254.
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Report
Leesa Quinlan, Martin Reeves, David Purser, Simon Levin, and V. V. Vasconcelos.
Strategies of Change.
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Article
P. Rutten, M. H. Lees, S. Klous, and P. M. A. Sloot.
State-space models reveal bursty movement behaviour of dance event visitors.
EPJ Data Science
10(35), 35.
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Article
J. Bruggeman, R. Sprik, and R. Quax.
Spontaneous cooperation for public goods.
Journal of Mathematical Sociology
45(3), pp. 183-191.
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Article
V. V. Vasconcelos, S. M. Constantino, A. Dannenberg, M. Lumkowsky, E. Weber, and S. Levin.
Segregation and clustering of preferences erode socially beneficial coordination.
Proceedings of the National Academy of Sciences of the United States of America
118(50), e2102153118.
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Article
M. Bause and T. Bereau.
Reweighting non-equilibrium steady-state dynamics along collective variables.
Journal of Chemical Physics
154(13), 134105.
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Proceedings
Shannon Fase, Andre Kruglyakov, Emőke Takács, and A. W. Abcouwer.
Rethinking Value - value circuit in a Circular Economy.
In: 37th EBES Conference Proceedings.
37-II, pp. 1115-1128.
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Article
T. Georgakopoulou, A.-E. van der Wijk, E. N. T. P. Bakker, E. vanBavel, A. Hoekstra, R. Padmos, V. Azizi, C. Miller, and M. van der Kolk.
Quantitative 3D analysis of tissue damage in a rat model of microembolization.
Journal of Biomechanics
128, 110723.
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Article
James L. Suter and Peter V. Coveney.
Principles governing control of aggregation and dispersion of aqueous graphene oxide.
Scientific Reports
11(1), 22460.
-
Proceedings
Sarah Koek, Emőke Takács, and A. W. Abcouwer.
Personal Commitment and performance improvement : a new evaluation.
In: Proceedings of the 2021 SIGED International Conference on Information Systems Education and Research.
pp. 237-248.
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Proceedings
M. Meijering, T. Abcouwer, and E. Takács.
Overcoming the Traps in the Adaptive Cycle of Resilience Model.
In: Eurasian Business and Economics Perspectives.
pp. 59-83.
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Article
T. I. Józsa, R. M. Padmos, W. K. El-Bouri, A. G. Hoekstra, and S. J. Payne.
On the Sensitivity Analysis of Porous Finite Element Models for Cerebral Perfusion Estimation.
Annals of Biomedical Engineering
49(12), p. 3647–3665.
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Article
D. Ye, A. Nikishova, L. Veen, P. Zun, and A. G. Hoekstra.
Non-intrusive and semi-intrusive uncertainty quantification of a multiscale in-stent restenosis model.
Reliability Engineering & System Safety
214, 107734.
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Article
G. Buiten, C. Diks, A. Faber, E. Heemskerk, C. Mattsson, F. Takes, and P. Sloot.
Netwerkanalyse biedt nieuwe inzichten voor clustergericht energiebeleid.
Economisch-Statistische Berichten
106(4804), pp. 586-588.
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Article
P. Mondal, P.-A. Cazade, A. K. Das, T. Bereau, and M. Meuwly.
Multipolar Force Fields for Amide-I Spectroscopy from Conformational Dynamics of the Alanine Trimer.
The journal of Physical Chemistry. B
125(39), pp. 10928-10938.
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Article
R. M. Padmos, N. Arrarte Terreros, T. I. Józsa, G. Závodszky, H. A. Marquering, C. B. L. M. Majoie, and A. G. Hoekstra.
Modelling the leptomeningeal collateral circulation during acute ischaemic stroke.
Medical Engineering & Physics
91, pp. 1-11.
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PhD Thesis
M. Bause.
Maximum caliber approach to reweight dynamics of non-equilibrium steady states.
Supervised by T. Bereau and E. J. Meijer.
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Article
J. F. Uleman, R. J. F. Melis, R. Quax, E. A. van der Zee, D. Thijssen, M. Dresler, O. van de Rest, I. F. van der Velpen, H. H. H. Adams, B. Schmand, I. M. C. M. de Kok, J. de Bresser, E. Richard, M. Verbeek, A. G. Hoekstra, E. A. J. A. Rouwette, and M. G. M. Olde Rikkert.
Mapping the multicausality of Alzheimer’s disease through group model building.
GeroScience
43(2), p. 829–843.
-
Chapter
Emőke Takács, A. W. Abcouwer, and Robin de Boer.
Management and Leadership Skills and Attitude in Uncertainty.
In: 17th European Conference on Management, Leadership and Governance.
pp. 401-410.
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Article
P. Rutten, M. H. Lees, S. Klous, and P. M. A. Sloot.
Intermittent and persistent movement patterns of dance event visitors in large sporting venues.
Physica A : Statistical Mechanics and its Applications
563, 125448.
-
Proceedings
A. W. Abcouwer, Emőke Takács, and Csilla Rácz.
Innovating Management and Leadership in Contemporary Times: Motivation and Evaluation in Learning.
In: Proceedings of the 17th European Conference on Management, Leadership and Governance.
17, pp. 1-11.
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Article
P. Dutta, R. Quax, L. Crielaard, L. Badiali, and P. M. A. Sloot.
Inferring temporal dynamics from cross-sectional data using Langevin dynamics.
Royal Society Open Science
8(11), 211374.
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Article
C. Miller, R. M. Padmos, M. van der Kolk, T. I. Józsa, N. Samuels, Y. Xue, S. J. Payne, and A. G. Hoekstra.
In silico trials for treatment of acute ischemic stroke: Design and implementation.
Computers in Biology and Medicine
137, 104802.
-
Proceedings
Youssef Assal, Emőke Takács, and A. W. Abcouwer.
INFORMATION OR COMPLICATION?.
In: 37th EBES Conference Proceedings.
37-II, pp. 1249-1261.
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Article
J. W. S. McCullough and P. V. Coveney.
High fidelity blood flow in a patient-specific arteriovenous fistula.
Scientific Reports
11(1), 22301.
-
Article
B. J. M. van Rooij, G. Závodszky, A. G. Hoekstra, and D. N. Ku.
Haemodynamic flow conditions at the initiation of high-shear platelet aggregation: a combined in vitro and cellular in silico study.
Interface Focus
11(1), 20190126.
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Article
C. E. S. Mattsson, F. W. Takes, E. M. Heemskerk, C. Diks, G. Buiten, A. Faber, and P. M. A. Sloot.
Functional Structure in Production Networks.
Frontiers in Big Data
4, 666712.
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Article
M. Girard and T. Bereau.
Finite-size transitions in complex membranes.
Biophysical Journal
120(12), pp. 2436-2443.
-
Article
T. Abcouwer, E. Takács, and J. Solymosy.
Fine-tuning the Evaluation Focus in the University Cooperative Learning Model in Relation to the Pandemic.
Communications of the Association for Information Systems
48, 25.
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Article
E. Weinans, R. Quax, E. H. van Nes, and I. A. van de Leemput.
Evaluating the performance of multivariate indicators of resilience loss.
Scientific Reports
11, 9148.
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Article
J. Kwak, M. H. Lees, W. Cai, A. R. Pourghaderi, and M. E. H. Ong.
Estimating horizontal movement performance of patient beds and the impact on emergency evacuation time.
Safety Science
134, 105038.
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Article
V. Karbovskii, M. Lees, A. Presbitero, A. Kurilkin, D. Voloshin, I. Derevitskii, A. Karsakov, and P. M. A. Sloot.
Ensemble learning for large-scale crowd flow prediction.
Engineering Applications of Artificial Intelligence
106, 104469.
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Article
P. Zun, A. Svitenkov, and A. Hoekstra.
Effects of local coronary blood flow dynamics on the predictions of a model of in-stent restenosis.
Journal of Biomechanics
120, 110361.
-
Proceedings
T. Schilstra, E. Takács, and T. Abcouwer.
Ecosystem Approach to life-long learning.
In: Proceedings of the 2021 SIGED International Conference on Information Systems Education and Research.
-
Article
J. F. Rudzinski, S. Kloth, S. Wörner, T. Pal, K. Kremer, T. Bereau, and M. Vogel.
Dynamical properties across different coarse-grained models for ionic liquids.
Journal of Physics-Condensed Matter
33(22), 224001.
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Proceedings
D. Knol, F. de Leeuw, J. F. Meirink, and V. V. Krzhizhanovskaya.
Deep Learning for Solar Irradiance Nowcasting: A Comparison of a Recurrent Neural Network and Two Traditional Methods.
In:
Computational Science – ICCS 2021.
V, pp. 309-322.
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Article
A. Dutta, J. Vreeken, L. M. Ghiringhelli, and T. Bereau.
Data-driven equation for drug-membrane permeability across drugs and membranes.
Journal of Chemical Physics
154(24), 244114.
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Article
R. M. Padmos, T. I. Józsa, W. K. El-Bouri, P. R. Konduri, S. J. Payne, and A. G. Hoekstra.
Coupling one-dimensional arterial blood flow to three-dimensional tissue perfusion models for in silico trials of acute ischaemic stroke.
Interface Focus
11(1), 20190125.
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Article
S. C. Lodestijn, T. van den Bosch, L. E. Nijman, L. F. Moreno, S. Schlingemann, V. M. Sheraton, S. M. van Neerven, J. J. Koning, F. A. Vieira Braga, N. J. Paauw, M. C. Lecca, K. J. Lenos, E. Morissey, D. M. Miedema, D. J. Winton, M. F. Bijlsma, and L. Vermeulen.
Continuous clonal labeling reveals uniform progenitor potential in the adult exocrine pancreas.
Cell Stem Cell
28(11), pp. 2009-2019.e4.
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Article
M. Girard and T. Bereau.
Computer simulations of lipid regulation by molecular semigrand canonical ensembles.
Biophysical Journal
120(12), pp. 2370-2373.
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PhD Thesis
-
Article
W. Sun, L. Liu, X. Chen, A. Szolnoki, and V. V. Vasconcelos.
Combination of institutional incentives for cooperative governance of risky commons.
iScience
24(8), 102844.
-
Article
F. P. Santos, S. A. Levin, and V. V. Vasconcelos.
Biased perceptions explain collective action deadlocks and suggest new mechanisms to prompt cooperation.
iScience
24(4), 102375.
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Article
G. Luraghi, S. Bridio, C. Miller, A. Hoekstra, J. F. Rodriguez Matas, and F. Migliavacca.
Applicability analysis to evaluate credibility of an in silico thrombectomy procedure.
Journal of Biomechanics
126, 110631.
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Article
J. W. S. McCullough and P. V. Coveney.
An efficient, localised approach for the simulation of elastic blood vessels using the lattice Boltzmann method.
Scientific Reports
11(1), 24260.
-
Article
M. Stieffenhofer, T. Bereau, and M. Wand.
Adversarial reverse mapping of condensed-phase molecular structures: Chemical transferability.
APL Materials
9(3), 031107.
-
Article
J. van der Wal, C. D. van Borkulo, M. K. Deserno, J. J. F. Breedvelt, M. Lees, J. C. Lokman, D. Borsboom, D. Denys, R. J. van Holst, M. P. Smidt, K. Stronks, P. J. Lucassen, J. C. M. van Weert, P. M. A. Sloot, C. L. Bockting, and R. W. Wiers.
Advancing urban mental health research: from complexity science to actionable targets for intervention.
The Lancet. Psychiatry
8(11), pp. 991-1000.
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Article
V. A. Karatayev, V. V. Vasconcelos, A.-S. Lafuite, S. A. Levin, C. T. Bauch, and M. Anand.
A well-timed shift from local to global agreements accelerates climate change mitigation.
Nature Communications
12, 2908.
-
Article
A. Presbitero, V. R. Melnikov, V. V. Krzhizhanovskaya, and P. M. A. Sloot.
A unifying model to estimate the effect of heat stress in the human innate immunity during physical activities.
Scientific Reports
11, 16688.
-
Proceedings
Khalid Azougagh, Jesse van den Berge, and R. G. Belleman.
A prototype for the treatment of children with selective mutism using interactive 360° VR.
In:
EuroXR 2021: Proceedings of the Virtual EuroXR Conference.
pp. 37-43.
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Article
T. I. Józsa, R. M. Padmos, N. Samuels, W. K. El-Bouri, A. G. Hoekstra, and S. J. Payne.
A porous circulation model of the human brain for in silico clinical trials in ischaemic stroke.
Interface Focus
11(1), 20190127.
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Article
Publications of the CSL group