Publications of the CSL group

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2023

• Article
  M. T. Wortel, D. Agashe, S. F. Bailey, C. Bank, K. Bisschop, T. Blankers, J. Cairns, E. S. Colizzi, D. Cusseddu, M. M. Desai, B. van Dijk, M. Egas, J. Ellers, A. T. Groot, D. G. Heckel, M. L. Johnson, K. Kraaijeveld, J. Krug, L. Laan, M. Lässig, P. A. Lind, J. Meijer, L. M. Noble, S. Okasha, P. B. Rainey, D. E. Rozen, S. Shitut, S. J. Tans, O. Tenaillon, H. Teotónio, J. A. G. M. de Visser, M. E. Visser, R. M. A. Vroomans, G. D. A. Werner, B. Wertheim, and P. S. Pennings. Towards evolutionary predictions. Evolutionary Applications pp. 3-21.
  Abstract Citation Links
• Article
  J. A. Kaandorp. Testing hypotheses on the calcification in scleractinian corals using a spatio-temporal model that shows a high degree of robustness. Journal of Theoretical Biology .
  Abstract Citation Links
• Article
  Claire Miller, Praneeta Konduri, Sara Bridio, Giulia Luraghi, Nerea Arrarte Terreros, Nikki Boodt, Noor Samuels, Jose F Rodriguez Matas, Francesco Migliavacca, Hester Lingsma, Aad van der Lugt, Yvo Roos, Diederik Dippel, Henk Marquering, Charles Majoie, and Alfons Hoekstra. In silico thrombectomy trials for acute ischemic stroke. Computer Methods and Programs in Biomedicine .
  Citation Links
• Article
  Ryan A. Manzuk, Adam C. Maloof, J. A. Kaandorp, and Mark Webster. Branching archaeocyaths as ecosystem engineers during the Cambrian radiation. Geobiology .
  Abstract Citation Links

2022

• Article
  Zirou Qiu, Baltazar Espinoza, Vitor V Vasconcelos, Chen Chen, Sara M Constantino, Stefani A Crabtree, Luojun Yang, Anil Vullikanti, Jiangzhuo Chen, Jörgen Weibull, Kaushik Basu, Avinash Dixit, Simon A Levin, and Madhav V Marathe. Understanding the coevolution of mask wearing and epidemics. Proceedings of the National Academy of Sciences of the United States of America p. e2123355119.
  Abstract Citation Links
• Article
  D. Ye, P. Zun, V. Krzhizhanovskaya, and A. G. Hoekstra. Uncertainty quantification of a three-dimensional in-stent restenosis model with surrogate modelling. Journal of the Royal Society Interface .
  Abstract Citation Links
• Article
  Alexandra A Yakusheva, Kirill R Butov, Georgii A Bykov, Gábor Závodszky, Anita Eckly, Fazly I Ataullakhanov, Christian Gachet, Mikhail A Panteleev, and Pierre H Mangin. Traumatic vessel injuries initiating hemostasis generate high shear conditions. Blood Advances .
  Citation Links
• Proceedings
  Majid Lotfian Delouee, Boris Koldehofe, and V. O. Degeler. Towards adaptive quality-aware Complex Event Processing in the Internet of Things.. In: IEEE 18th International Conference on Mobility, Sensing and Networking (MSN 2022).
  Abstract Citation
• Article
  P. P. M. van Zuijlen, H. Ibrahim Korkmaz, V. M. Sheraton, Tsjitske M. Haanstra, Anouk Pijpe, Annebeth de Vries, C. H. van der Vlies, Eelke Bosma, Evelien de Jong, Esther Middelkoop, F. J. Vermolen, and P. M. A. Sloot. The future of burn care from a complexity science perspective. Journal of Burn Care & Research .
  Abstract Citation Links
• Article
  Benjamin Czaja, Jonathan de Bouter, Morgan Heisler, Gábor Závodszky, Sonja Karst, Marinko Sarunic, David Maberley, and Alfons Hoekstra. The effect of stiffened diabetic red blood cells on wall shear stress in a reconstructed 3D microaneurysm. Computer methods in biomechanics & biomedical engineering .
  Abstract Citation Links
• Article
  Luojun Yang, Sara M Constantino, Bryan T Grenfell, Elke U Weber, Simon A Levin, and Vítor V Vasconcelos. Sociocultural determinants of global mask-wearing behavior. Proceedings of the National Academy of Sciences of the United States of America p. e2213525119.
  Citation
• Proceedings
  Robert Riesebos, Viktoriya Degeler, and Andres Tello. Smartphone-Based Real-Time Indoor Positioning Using BLE Beacons. In: 2022 IEEE 18th International Conference on Automation Science and Engineering, CASE 2022. pp. 1281-1288.
  Abstract Citation Links
• Article
  V. V. Vasconcelos. Segregation and clustering of preferences erode socially beneficial coordination. Authors on the article. IAS Review .
  Citation Links
• Article
  H. I. Korkmaz, F. B. Niessen, A. Pijpe, V. M. Sheraton, F. J. Vermolen, P. A. J. Krijnen, H. W. M. Niessen, P. M. A. Sloot, E. Middelkoop, S. Gibbs, and P. P. M. van Zuijlen. Scar formation from the perspective of complexity science: a new look at the biological system as a whole. Journal of Wound Care pp. 178-184.
  Abstract Citation Links
• Article
  Loes Crielaard, Jeroen F Uleman, Bas D L Châtel, Sacha Epskamp, Peter M A Sloot, and Rick Quax. Refining the causal loop diagram. Psychological Methods .
  Abstract Citation Links
• Article
  J. A. Kaandorp. Quantitative three-dimensional morphological analysis supports species discrimination in complex-shaped and taxonomically challenging corals. Frontiers in Marine Science .
  Abstract Citation Links
• Article
  Vítor V. Vasconcelos, Astrid Dannenberg, and Simon A. Levin. Punishment institutions selected and sustained through voting and learning. Nature Sustainability p. 578–585.
  Abstract Citation Links
• Article
  K. van der Zwet, A. I. Barros, T. M. van Engers, and P. M. A. Sloot. Promises and pitfalls of computational modelling for insurgency conflicts. The Journal of Defense Modeling and Simulation: Applications, Methodology, Technology .
  Abstract Citation Links
• Article
  gabriele spin, P. M. A. Sloot, E. Mancini, Thomas Attema, mark abspoel, Jan de Gier, Serge Fehr, Thijs Veugen, Maran van Heesch, Daniel Worm, Andrea De Luca, and R. Cramer. New Approach to Privacy-Preserving Clinical Decision Support Systems for HIV Treatment. Journal of medical systems .
  Abstract Citation Links
• Article
  J. A. Kaandorp. Multiscale analysis on otolith structural features reveals differences in ontogenesis and sex in Merluccius merluccius in the western Adriatic Sea. Royal Society Open Science .
  Abstract Citation Links
• Article
  P. Rutten, M. H. Lees, S. Klous, Hans Heesterbeek, and P. M. A. Sloot. Modelling the dynamic relationship between spread of infection and observed crowd movement patterns at large scale events. Scientific Reports .
  Abstract Citation Links
• Article
  Raymond M. Padmos, Nerea Arrarte Terreros, Tamás I. Józsa, Gábor Závodszky, Henk A. Marquering, Charles B. L. M. Majoie, Stephen J. Payne, and Alfons G. Hoekstra. Modelling collateral flow and thrombus permeability during acute ischaemic stroke. Journal of the Royal Society Interface .
  Abstract Citation Links
• Article
  E. P. N. Dignum, Efi Athieniti, W. R. Boterman, Andreas Flache, and M. H. Lees. Mechanisms for increased school segregation relative to residential segregation: a model-based analysis. Computers, Environment and Urban Systems .
  Abstract Citation Links
• Article
  Quentin Kimmerlin, Sylvie Moog, Alexandra Yakusheva, Catherine Ziessel, Anita Eckly, Monique Freund, Gábor Závodszky, Yannick Knapp, Pierre Mangin, and François Lanza. Loss of α4A- and β1-tubulins leads to severe platelet spherocytosis and strongly impairs hemostasis in mice. Blood pp. 2290-2299.
  Abstract Citation Links
• Article
  Liping Wang, Eveline P. Van Poelgeest, Anouschka C. Pronk, Joost G. Daams, Mariska M. G. Leeflang, Alfons G. Hoekstra, and Nathalie Van Der Velde. Impact of cardiovascular evaluations and interventions on fall risk in older adults: a protocol for a scoping review and evidence map. BMJ Open .
  Abstract Citation Links
• Article
  K. van der Zwet, A. I. Barros, T. M. van Engers, and P. M. A. Sloot. Emergence of protests during the COVID-19 pandemic: quantitative models to explore the contributions of societal conditions. Humanities and Social Sciences Communications .
  Abstract Citation Links
• Article
  C. van Elteren, R. Quax, and P. Sloot. Dynamic importance of network nodes is poorly predicted by static structural features. Physica A : Statistical Mechanics and its Applications .
  Abstract Citation Links
• Chapter
  Andres Tello and Viktoriya Degeler. Digital Twins: An enabler for digital transformation. In: Digital Transformation: A Guide for Managers. pp. 176-203.
  Citation
• Article
  B. Mohr, K. Shmilovich, I. S. Kleinwächter, D. Schneider, A. L. Ferguson, and T. Bereau. Data-driven discovery of cardiolipin-selective small molecules by computational active learning. Chemical Science pp. 4498-4511.
  Abstract Citation Links
• Article
  X. Zhou, A. Belloum, M. H. Lees, T. van Engers, and C. de Laat. Costly incentives design from an institutional perspective: cooperation, sustainability and affluence. Proceedings of the Royal Society A-Mathematical, Physical and Engineering Sciences .
  Abstract Citation Links
• Article
  Sergey V. Kovalchuk, Valeria V. Krzhizhanovskaya, Maciej Paszyński, Dieter Kranzlmüller, Jack Dongarra, and Peter M. A. Sloot. Computational science for a better future. Journal of Computational Science .
  Citation Links
• Article
  Isabel Kleinwächter, Bernadette Mohr, Aljoscha Joppe, Nadja Hellmann, Tristan Bereau, Heinz D. Osiewacz, and Dirk Schneider. CLiB - a novel cardiolipin-binder isolated via data-driven and in vitro screening. RSC Chemical Biology pp. 941-954.
  Abstract Citation Links
• Article
  J. A. Kaandorp. Bioprinted Living Coral Microenvironments Mimicking Coral‐Algal Symbiosis. Advanced Functional Materials .
  Abstract Citation Links
• Article
  V. R. Melnikov, G. I. Christopoulos, V. V. Krzhizhanovskaya, M. H. Lees, and P. M. A. Sloot. Behavioural thermal regulation explains pedestrian path choices in hot urban environments. Scientific Reports .
  Abstract Citation Links
• Article
  M. W. J. van den Ende, S. Epskamp, M. H. Lees, H. L. J. van der Maas, R. W. Wiers, and P. M. A. Sloot. A review of mathematical modeling of addiction regarding both (neuro-) psychological processes and the social contagion perspectives. Addictive Behaviors .
  Abstract Citation Links
• Article
  Katinka den Nijs, Jose Edivaldo, Bas DL Châtel, Jeroen F Uleman, Marcel Olde Rikkert, Heiman Wertheim, and Rick Quax. A global sharing mechanism of resources: modeling a crucial step in the fight against pandemics. International Journal of Environmental Research and Public Health .
  Citation Links

2021

• Proceedings
  M. van der Kolk, C. Miller, R. Padmos, V. Azizi, and A. Hoekstra. des-ist: A Simulation Framework to Streamline Event-Based In Silico Trials. In: Computational Science – ICCS 2021. pp. 648-654.
  Abstract Citation Links
• Article
  D. Groen, H. Arabnejad, V. Jancauskas, W. N. Edeling, F. Jansson, R. A. Richardson, J. Lakhlili, L. Veen, B. Bosak, P. Kopta, D. W. Wright, N. Monnier, P. Karlshoefer, D. Suleimenova, R. Sinclair, M. Vassaux, A. Nikishova, M. Bieniek, O. O. Luk, M. Kulczewski, E. Raffin, D. Crommelin, O. Hoenen, D. P. Coster, and P. V. Coveney. VECMAtk: a scalable verification, validation and uncertainty quantification toolkit for scientific simulations. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences .
  Abstract Citation Links
• Article
  L. Crielaard, M. Nicolaou, A. Sawyer, R. Quax, and K. Stronks. Understanding the impact of exposure to adverse socioeconomic conditions on chronic stress from a complexity science perspective. BMC Medicine .
  Abstract Citation Links
• Article
  D. Ye, L. Veen, A. Nikishova, J. Lakhlili, W. Edeling, O. O. Luk, V. V. Krzhizhanovskaya, and A. G. Hoekstra. Uncertainty quantification patterns for multiscale models. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences .
  Abstract Citation Links
• Proceedings
  C. Miller, M. van der Kolk, R. Padmos, T. Józsa, and A. Hoekstra. Uncertainty Quantification of Coupled 1D Arterial Blood Flow and 3D Tissue Perfusion Models Using the INSIST Framework. In: Computational Science – ICCS 2021. pp. 691-697.
  Abstract Citation Links
• Article
  S. Achterhof and J. M. Meylahn. Two-community noisy Kuramoto model with general interaction strengths. II. Chaos .
  Abstract Citation Links
• Article
  S. Achterhof and J. M. Meylahn. Two-community noisy Kuramoto model with general interaction strengths. I. Chaos .
  Abstract Citation Links
• Proceedings
  R. M. Padmos, T. I. Józsa, W. K. El-Bouri, G. Závodszky, S. J. Payne, and A. G. Hoekstra. Two-Way Coupling Between 1D Blood Flow and 3D Tissue Perfusion Models. In: Computational Science – ICCS 2021. pp. 670-683.
  Abstract Citation Links
• Article
  D. Suleimenova, H. Arabnejad, W. N. Edeling, D. Coster, O. O. Luk, J. Lakhlili, V. Jancauskas, M. Kulczewski, L. Veen, D. Ye, P. Zun, V. Krzhizhanovskaya, A. Hoekstra, D. Crommelin, P. V. Coveney, and D. Groen. Tutorial applications for Verification, Validation and Uncertainty Quantification using VECMA toolkit. Journal of Computational Science .
  Abstract Citation Links
• Article
  UnYoung Chavez-Baldini, Dorien H Nieman, Amos Keestra, Anja Lok, Roel J T Mocking, Pelle de Koning, Valeria V Krzhizhanovskaya, Claudi L H Bockting, Geeske van Rooijen, Dirk J A Smit, Arjen L Sutterland, Karin J H Verweij, Guido van Wingen, Johanna T W Wigman, Nienke C Vulink, and Damiaan Denys. The relationship between cognitive functioning and psychopathology in patients with psychiatric disorders. Psychological Medicine .
  Abstract Citation Links
• Article
  J. Nevin, M. Lees, and P. Groth. The non-linear impact of data handling on network diffusion models. Patterns .
  Abstract Citation Links
• Article
  Alexander Gheorghiu, Peter V. Coveney, and Alya A. Arabi. The influence of external electric fields on proton transfer tautomerism in the guanine-cytosine base pair. Physical Chemistry Chemical Physics pp. 6252-6265.
  Abstract Citation Links
• Article
  W. Edeling, H. Arabnejad, R. Sinclair, D. Suleimenova, K. Gopalakrishnan, B. Bosak, D. Groen, I. Mahmood, D. Crommelin, and P. V. Coveney. The impact of uncertainty on predictions of the CovidSim epidemiological code. Nature Computational Science pp. 128-135.
  Abstract Citation Links
• Article
  C. J. Spieker, G. Závodszky, C. Mouriaux, M. van der Kolk, C. Gachet, P. H. Mangin, and A. G. Hoekstra. The Effects of Micro-vessel Curvature Induced Elongational Flows on Platelet Adhesion. Annals of Biomedical Engineering p. 3609–3620.
  Abstract Citation Links
• Article
  I. S. Kleinwächter, S. Pannwitt, A. Centi, N. Hellmann, E. Thines, T. Bereau, and D. Schneider. The Bacteriostatic Activity of 2-Phenylethanol Derivatives Correlates with Membrane Binding Affinity. Membranes .
  Abstract Citation Links
• Report
  Leesa Quinlan, Martin Reeves, David Purser, Simon Levin, and V. V. Vasconcelos. Strategies of Change.
  Citation Links
• Article
  P. Rutten, M. H. Lees, S. Klous, and P. M. A. Sloot. State-space models reveal bursty movement behaviour of dance event visitors. EPJ Data Science .
  Abstract Citation Links
• Article
  J. Bruggeman, R. Sprik, and R. Quax. Spontaneous cooperation for public goods. Journal of Mathematical Sociology pp. 183-191.
  Abstract Citation Links
• Article
  V. V. Vasconcelos, S. M. Constantino, A. Dannenberg, M. Lumkowsky, E. Weber, and S. Levin. Segregation and clustering of preferences erode socially beneficial coordination. Proceedings of the National Academy of Sciences of the United States of America .
  Abstract Citation Links
• Article
  M. Bause and T. Bereau. Reweighting non-equilibrium steady-state dynamics along collective variables. Journal of Chemical Physics .
  Abstract Citation Links
• Proceedings
  Shannon Fase, Andre Kruglyakov, Emoke Takács, and A. W. Abcouwer. Rethinking Value - value circuit in a Circular Economy. In: 37th EBES Conference Proceedings. pp. 1115-1128.
  Abstract Citation
• Article
  T. Georgakopoulou, A.-E. van der Wijk, E. N. T. P. Bakker, E. vanBavel, A. Hoekstra, R. Padmos, V. Azizi, C. Miller, and M. van der Kolk. Quantitative 3D analysis of tissue damage in a rat model of microembolization. Journal of Biomechanics .
  Abstract Citation Links
• Article
  James L. Suter and Peter V. Coveney. Principles governing control of aggregation and dispersion of aqueous graphene oxide. Scientific Reports .
  Abstract Citation Links
• Proceedings
  S. Koek, E. Takács, and A. W. Abcouwer. Personal Commitment and performance improvement : a new evaluation. In: Proceedings of the 2021 SIGED International Conference on Information Systems Education and Research. pp. 237-248.
  Abstract Citation
• Proceedings
  M. Meijering, T. Abcouwer, and E. Takács. Overcoming the Traps in the Adaptive Cycle of Resilience Model. In: Eurasian Business and Economics Perspectives. pp. 59-83.
  Abstract Citation Links
• Article
  T. I. Józsa, R. M. Padmos, W. K. El-Bouri, A. G. Hoekstra, and S. J. Payne. On the Sensitivity Analysis of Porous Finite Element Models for Cerebral Perfusion Estimation. Annals of Biomedical Engineering p. 3647–3665.
  Abstract Citation Links
• Article
  D. Ye, A. Nikishova, L. Veen, P. Zun, and A. G. Hoekstra. Non-intrusive and semi-intrusive uncertainty quantification of a multiscale in-stent restenosis model. Reliability Engineering & System Safety .
  Abstract Citation Links
• Article
  G. Buiten, C. Diks, A. Faber, E. Heemskerk, C. Mattsson, F. Takes, and P. Sloot. Netwerkanalyse biedt nieuwe inzichten voor clustergericht energiebeleid. Economisch-Statistische Berichten pp. 586-588.
  Abstract Citation Links
• Article
  P. Mondal, P.-A. Cazade, A. K. Das, T. Bereau, and M. Meuwly. Multipolar Force Fields for Amide-I Spectroscopy from Conformational Dynamics of the Alanine Trimer. The journal of Physical Chemistry. B pp. 10928-10938.
  Abstract Citation Links
• Article
  R. M. Padmos, N. Arrarte Terreros, T. I. Józsa, G. Závodszky, H. A. Marquering, C. B. L. M. Majoie, and A. G. Hoekstra. Modelling the leptomeningeal collateral circulation during acute ischaemic stroke. Medical Engineering & Physics pp. 1-11.
  Abstract Citation Links
• PhD Thesis
  M. Bause. Maximum caliber approach to reweight dynamics of non-equilibrium steady states. Supervised by T. Bereau and E. J. Meijer.
  Abstract Citation Links
• Article
  J. F. Uleman, R. J. F. Melis, R. Quax, E. A. van der Zee, D. Thijssen, M. Dresler, O. van de Rest, I. F. van der Velpen, H. H. H. Adams, B. Schmand, I. M. C. M. de Kok, J. de Bresser, E. Richard, M. Verbeek, A. G. Hoekstra, E. A. J. A. Rouwette, and M. G. M. Olde Rikkert. Mapping the multicausality of Alzheimer’s disease through group model building. GeroScience p. 829–843.
  Abstract Citation Links
• Proceedings
  Emoke Takács, A. W. Abcouwer, and Robin de Boer. Management and Leadership Skills and Attitude in Uncertainty. In: Proceedings of the 17th European Conference on Management, Leadership and Governance. pp. 401-410.
  Abstract Citation
• Article
  P. Rutten, M. H. Lees, S. Klous, and P. M. A. Sloot. Intermittent and persistent movement patterns of dance event visitors in large sporting venues. Physica A : Statistical Mechanics and its Applications .
  Abstract Citation Links
• Proceedings
  A. W. Abcouwer, Emoke Takács, and Csilla Rácz. Innovating Management and Leadership in Contemporary Times: Motivation and Evaluation in Learning. In: Proceedings of the 17th European Conference on Management, Leadership and Governance. pp. 1-11.
  Abstract Citation
• Article
  P. Dutta, R. Quax, L. Crielaard, L. Badiali, and P. M. A. Sloot. Inferring temporal dynamics from cross-sectional data using Langevin dynamics. Royal Society Open Science .
  Abstract Citation Links
• Article
  C. Miller, R. M. Padmos, M. van der Kolk, T. I. Józsa, N. Samuels, Y. Xue, S. J. Payne, and A. G. Hoekstra. In silico trials for treatment of acute ischemic stroke: Design and implementation. Computers in Biology and Medicine .
  Abstract Citation Links
• Proceedings
  Youssef Assal, Emoke Takacs, and A. W. Abcouwer. INFORMATION OR COMPLICATION?. In: 37th EBES Conference Proceedings. pp. 1249-1261.
  Abstract Citation
• Article
  J. W. S. McCullough and P. V. Coveney. High fidelity blood flow in a patient-specific arteriovenous fistula. Scientific Reports .
  Abstract Citation Links
• Article
  B. J. M. van Rooij, G. Závodszky, A. G. Hoekstra, and D. N. Ku. Haemodynamic flow conditions at the initiation of high-shear platelet aggregation: a combined in vitro and cellular in silico study. Interface Focus .
  Abstract Citation Links
• Article
  C. E. S. Mattsson, F. W. Takes, E. M. Heemskerk, C. Diks, G. Buiten, A. Faber, and P. M. A. Sloot. Functional Structure in Production Networks. Frontiers in Big Data .
  Abstract Citation Links
• Article
  M. Girard and T. Bereau. Finite-size transitions in complex membranes. Biophysical Journal pp. 2436-2443.
  Abstract Citation Links
• Article
  T. Abcouwer, E. Takács, and J. Solymosy. Fine-tuning the Evaluation Focus in the University Cooperative Learning Model in Relation to the Pandemic. Communications of the Association for Information Systems .
  Abstract Citation Links
• Article
  E. Weinans, R. Quax, E. H. van Nes, and I. A. van de Leemput. Evaluating the performance of multivariate indicators of resilience loss. Scientific Reports .
  Abstract Citation Links
• Article
  J. Kwak, M. H. Lees, W. Cai, A. R. Pourghaderi, and M. E. H. Ong. Estimating horizontal movement performance of patient beds and the impact on emergency evacuation time. Safety Science .
  Abstract Citation Links
• Article
  V. Karbovskii, M. Lees, A. Presbitero, A. Kurilkin, D. Voloshin, I. Derevitskii, A. Karsakov, and P. M. A. Sloot. Ensemble learning for large-scale crowd flow prediction. Engineering Applications of Artificial Intelligence .
  Abstract Citation Links
• Article
  P. Zun, A. Svitenkov, and A. Hoekstra. Effects of local coronary blood flow dynamics on the predictions of a model of in-stent restenosis. Journal of Biomechanics .
  Abstract Citation Links
• Proceedings
  T. Schilstra, E. Takács, and T. Abcouwer. Ecosystem Approach to life-long learning. In: Proceedings of the 2021 SIGED International Conference on Information Systems Education and Research.
  Abstract Citation Links
• Article
  J. F. Rudzinski, S. Kloth, S. Wörner, T. Pal, K. Kremer, T. Bereau, and M. Vogel. Dynamical properties across different coarse-grained models for ionic liquids. Journal of Physics-Condensed Matter .
  Abstract Citation Links
• Proceedings
  D. Knol, F. de Leeuw, J. F. Meirink, and V. V. Krzhizhanovskaya. Deep Learning for Solar Irradiance Nowcasting: A Comparison of a Recurrent Neural Network and Two Traditional Methods. In: Computational Science – ICCS 2021. pp. 309-322.
  Abstract Citation Links
• Article
  A. Dutta, J. Vreeken, L. M. Ghiringhelli, and T. Bereau. Data-driven equation for drug-membrane permeability across drugs and membranes. Journal of Chemical Physics .
  Abstract Citation Links
• Article
  R. M. Padmos, T. I. Józsa, W. K. El-Bouri, P. R. Konduri, S. J. Payne, and A. G. Hoekstra. Coupling one-dimensional arterial blood flow to three-dimensional tissue perfusion models for in silico trials of acute ischaemic stroke. Interface Focus .
  Abstract Citation Links
• Article
  S. C. Lodestijn, T. van den Bosch, L. E. Nijman, L. F. Moreno, S. Schlingemann, V. M. Sheraton, S. M. van Neerven, J. J. Koning, F. A. Vieira Braga, N. J. Paauw, M. C. Lecca, K. J. Lenos, E. Morissey, D. M. Miedema, D. J. Winton, M. F. Bijlsma, and L. Vermeulen. Continuous clonal labeling reveals uniform progenitor potential in the adult exocrine pancreas. Cell Stem Cell pp. 2009-2019.e4.
  Abstract Citation Links
• Article
  M. Girard and T. Bereau. Computer simulations of lipid regulation by molecular semigrand canonical ensembles. Biophysical Journal pp. 2370-2373.
  Abstract Citation Links
• PhD Thesis
  V. Melnikov. Computational models of human response to urban heat. Supervised by P. M. A. Sloot, V. Krzhizhanovskaya, and M. H. Lees.
  Abstract Citation Links
• Article
  W. Sun, L. Liu, X. Chen, A. Szolnoki, and V. V. Vasconcelos. Combination of institutional incentives for cooperative governance of risky commons. iScience .
  Abstract Citation Links
• Article
  F. P. Santos, S. A. Levin, and V. V. Vasconcelos. Biased perceptions explain collective action deadlocks and suggest new mechanisms to prompt cooperation. iScience .
  Abstract Citation Links
• Article
  G. Luraghi, S. Bridio, C. Miller, A. Hoekstra, J. F. Rodriguez Matas, and F. Migliavacca. Applicability analysis to evaluate credibility of an in silico thrombectomy procedure. Journal of Biomechanics .
  Abstract Citation Links
• Article
  Jeroen F Uleman, Rick Quax, René JF Melis, Alfons Hoekstra, and Marcel GM Olde Rikkert. An individualized systems model to optimize Alzheimer’s disease prevention strategies. Alzheimer's & Dementia .
  Abstract Citation Links
• Article
  J. W. S. McCullough and P. V. Coveney. An efficient, localised approach for the simulation of elastic blood vessels using the lattice Boltzmann method. Scientific Reports .
  Abstract Citation Links
• Article
  M. Stieffenhofer, T. Bereau, and M. Wand. Adversarial reverse mapping of condensed-phase molecular structures: Chemical transferability. APL Materials .
  Abstract Citation Links
• Article
  J. van der Wal, C. D. van Borkulo, M. K. Deserno, J. J. F. Breedvelt, M. Lees, J. C. Lokman, D. Borsboom, D. Denys, R. J. van Holst, M. P. Smidt, K. Stronks, P. J. Lucassen, J. C. M. van Weert, P. M. A. Sloot, C. L. Bockting, and R. W. Wiers. Advancing urban mental health research: from complexity science to actionable targets for intervention. The Lancet. Psychiatry 8(11), pp. 991-1000.
  Abstract Citation Links
• Article
  V. A. Karatayev, V. V. Vasconcelos, A.-S. Lafuite, S. A. Levin, C. T. Bauch, and M. Anand. A well-timed shift from local to global agreements accelerates climate change mitigation. Nature Communications .
  Abstract Citation Links
• Article
  A. Presbitero, V. R. Melnikov, V. V. Krzhizhanovskaya, and P. M. A. Sloot. A unifying model to estimate the effect of heat stress in the human innate immunity during physical activities. Scientific Reports .
  Abstract Citation Links

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