Publications of the CSL group2023
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Article. Understanding multimorbidity requires sign-disease networks and higher-order interactions, a perspective. Frontiers in Systems Biology 3, 1155599.
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Article. Towards evolutionary predictions: Current promises and challenges. Evolutionary Applications 16(1), pp. 3-21.
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Article. The relationship between cognitive functioning and psychopathology in patients with psychiatric disorders. Psychological Medicine 53(2), pp. 476-485.
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Article. The dynamics of corruption under an optional external supervision service. Applied Mathematics and Computation 457, 128172.
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Article. The computational planet. Journal of Computational Science 72, 102102.
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Article. Testing hypotheses on the calcification in scleractinian corals using a spatio-temporal model that shows a high degree of robustness. Journal of Theoretical Biology 561(21), 111382.
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Article. Simulating the multicausality of Alzheimer's disease with system dynamics. Alzheimer's & Dementia 19(6), pp. 2633-2654.
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Proceedings. Simulating Initial Steps of Platelet Aggregate Formation in a Cellular Blood Flow Environment. In: Computational Science – ICCS 2023. ISBN 9783031360244. III, pp. 323-336.
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Proceedings. Professional and 21st Century Skills for Data Driven Digital Economy. In: EDUCON 2023 - IEEE Global Engineering Education Conference, Proceedings. ISBN 9798350399431.
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Proceedings. Preface. In: Computational Science – ICCS 2023. ISBN 9783031359958. I, pp. v-vi.
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Article. Optimization of institutional incentives for cooperation in structured populations. Journal of the Royal Society Interface 20(199), 20220653.
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Article. Inverse uncertainty quantification of a mechanical model of arterial tissue with surrogate modelling. Reliability Engineering & System Safety 238, 109393.
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Article. Initial platelet aggregation in the complex shear environment of a punctured vessel model. Physics of Fluids 35(7), 071904.
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Article. Image-based flow simulation of platelet aggregates under different shear rates. PLoS Computational Biology 19(7), e1010965.
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Proceedings. Global Sensitivity Analysis Using Polynomial Chaos Expansion on the Grassmann Manifold. In: International Conference on Computational Science. pp. 583-597.
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Article. Embracing complexity in sepsis. Critical Care 27, 102.
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Proceedings. Data Integration Landscapes. In: Computational Science – ICCS 2023. ISBN 9783031359958. I, pp. 494-508.
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PhD Thesis. Computational models of emergent organisation in conflict environments. ISBN 9789464731811. Supervised by P. M. A. Sloot, T. M. van Engers, and A. I. Barros.
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Proceedings. Characterization of Pedestrian Contact Interaction Trajectories. In: Computational Science – ICCS 2023. ISBN 9783031359958. I, pp. 18-32.
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Article. Building a Fine-Grained Analytical Performance Model for Complex Scientific Simulations. Lecture Notes in Computer Science 13826.
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Article. Branching archaeocyaths as ecosystem engineers during the Cambrian radiation. Geobiology 21(1), pp. 66-85.
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Article. Applying systems thinking to unravel the mechanisms underlying orthostatic hypotension related fall risk. GeroScience .
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Article. A network analysis of depressive symptoms and metabolomics. Psychological Medicine pp. 1-10.
2022
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Article. Understanding the coevolution of mask wearing and epidemics. Proceedings of the National Academy of Sciences of the United States of America 119(26), e2123355119.
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Article. Understanding Complexity in Charging Infrastructure through the Lens of Social Supply–Demand Systems. World Electric Vehicle Journal 13(3), 44.
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Article. Uncertainty quantification of a three-dimensional in-stent restenosis model with surrogate modelling. Journal of the Royal Society Interface 19(187), 20210864.
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Article. Traumatic vessel injuries initiating hemostasis generate high shear conditions. Blood Advances .
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Proceedings. Towards adaptive quality-aware Complex Event Processing in the Internet of Things. In: Proceedings - 2022 18th International Conference on Mobility, Sensing and Networking, MSN 2022. ISBN 9781665464574. pp. 571-575.
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Article. The effect of stiffened diabetic red blood cells on wall shear stress in a reconstructed 3D microaneurysm. Computer methods in biomechanics & biomedical engineering 25(15), pp. 1691-1709.
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Article. The Impact of Stochastic Volatility on Initial Margin and MVA for Interest Rate Derivatives. Applied Mathematical Finance 29(2), pp. 141-179.
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Article. The Future of Burn Care From a Complexity Science Perspective. Journal of Burn Care & Research .
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PhD Thesis. Surrogate modelling and uncertainty quantification for multiscale simulation. Supervised by A. G. Hoekstra and V. Krzhizhanovskaya.
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Article. Sociocultural determinants of global mask-wearing behavior. Proceedings of the National Academy of Sciences of the United States of America 119(41), e2213525119.
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Proceedings. Smartphone-Based Real-Time Indoor Positioning Using BLE Beacons. In: 2022 IEEE 18th International Conference on Automation Science and Engineering (CASE 2022). ISBN 9781665490429. pp. 1281-1288.
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Proceedings. Simulation-Based Analysis of Evacuation Elevator Allocation for a Multi-Level Hospital Emergency Department. In: Proceedings of the 2022 Winter Simulation Conference, WSC 2022. ISBN 9798350309713. pp. 358-369.
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Article. Segregation and clustering of preferences erode socially beneficial coordination. IAS Review 3, 3.2.
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Article. Scar formation from the perspective of complexity science: a new look at the biological system as a whole. Journal of Wound Care 31(2), pp. 178-184.
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Article. Quantitative three-dimensional morphological analysis supports species discrimination in complex-shaped and taxonomically challenging corals. Frontiers in Marine Science 9, 955582.
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Article. Punishment institutions selected and sustained through voting and learning. Nature Sustainability 5(7), p. 578–585.
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Article. Promises and pitfalls of computational modelling for insurgency conflicts. The Journal of Defense Modeling and Simulation: Applications, Methodology, Technology .
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Proceedings. Preface. In: Computational Science – ICCS 2022. ISBN 9783031087578. III, pp. v-vi.
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Proceedings. Preface. In: Computational Science – ICCS 2022. ISBN 9783031087547. II, pp. v-vi.
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Proceedings. Preface. In: Computational Science – ICCS 2022. ISBN 9783031087516. I, pp. v-vi.
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Proceedings. Preface. In: Computational Science – ICCS 2022. ISBN 9783031087608. IV, pp. v-vi.
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Article. No robust relation between larger cities and depression. Proceedings of the National Academy of Sciences of the United States of America 119(2), e2118943118.
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Article. New Approach to Privacy-Preserving Clinical Decision Support Systems for HIV Treatment. Journal of medical systems 46(12), 84.
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Article. Multiscale analysis on otolith structural features reveals differences in ontogenesis and sex in Merluccius merluccius in the western Adriatic Sea. Royal Society Open Science 9(5), 211943.
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Article. Modelling the dynamic relationship between spread of infection and observed crowd movement patterns at large scale events. Scientific Reports 12, 14825.
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Article. Modelling collateral flow and thrombus permeability during acute ischaemic stroke. Journal of the Royal Society Interface 19(195), 20220649.
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Article. Mechanisms for increased school segregation relative to residential segregation: a model-based analysis. Computers, Environment and Urban Systems 93, 101772.
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Article. Maximum expected survival rate model for public access defibrillator placement. Resuscitation 170, pp. 213-221.
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Article. Loss of α4A- and β1-tubulins leads to severe platelet spherocytosis and strongly impairs hemostasis in mice. Blood 140(21), pp. 2290-2299.
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Article. Learning to Collude in a Pricing Duopoly. Manufacturing and Service Operations Management 24(5), pp. 2577-2594.
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Article. Information Decomposition Diagrams Applied beyond Shannon Entropy: A Generalization of Hu's Theorem.
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Article. Influence of committed volunteers on helping behavior in emergency evacuations. Journal of Physics: Complexity 3(1), 015005.
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Article. Impact of cardiovascular evaluations and interventions on fall risk in older adults: a protocol for a scoping review and evidence map. BMJ Open 12(4), e057959.
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Article. How exposure to chronic stress contributes to the development of type 2 diabetes. Frontiers in Neuroendocrinology 65, 100972.
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Article. Emergence of protests during the COVID-19 pandemic: quantitative models to explore the contributions of societal conditions. Humanities and Social Sciences Communications 9, 68.
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Article. Dynamic importance of network nodes is poorly predicted by static structural features. Physica A : Statistical Mechanics and its Applications 593, 126889.
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Chapter. Digital Twins: An enabler for digital transformation. In: Digital Transformation: A Guide for Managers. pp. 176-203.
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Article. Data-driven discovery of cardiolipin-selective small molecules by computational active learning. Chemical Science 13(16), pp. 4498-4511.
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Article. Costly incentives design from an institutional perspective: cooperation, sustainability and affluence. Proceedings of the Royal Society A-Mathematical, Physical and Engineering Sciences 478(2265), 20220393.
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Article. Computational science for a better future. Journal of Computational Science 62, 101745.
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Article. CLiB - a novel cardiolipin-binder isolated via data-driven and in vitro screening. RSC Chemical Biology 3(7), pp. 941-954.
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Article. Bioprinted Living Coral Microenvironments Mimicking Coral‐Algal Symbiosis. Advanced Functional Materials 32(35), 2202273.
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Article. Behavioural thermal regulation explains pedestrian path choices in hot urban environments. Scientific Reports 12, 2441.
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Article. Animal models and animal-free innovations for cardiovascular research: current status and routes to be explored. Consensus document of the ESC Working Group on Myocardial Function and the ESC Working Group on Cellular Biology of the Heart. Cardiovascular research .
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Article. A validated agent-based model for stress testing charging infrastructure utilization. Transportation Research Part A - Policy and Practice 159, pp. 237-262.
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Article. A review of mathematical modeling of addiction regarding both (neuro-) psychological processes and the social contagion perspectives. Addictive Behaviors 127, 107201.
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Article. A Global Sharing Mechanism of Resources. International Journal of Environmental Research and Public Health 19(10), 5930.
2021
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Proceedings. des-ist: A Simulation Framework to Streamline Event-Based In Silico Trials. In: Computational Science – ICCS 2021. ISBN 9783030779672. III, pp. 648-654.
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Article. VECMAtk: a scalable verification, validation and uncertainty quantification toolkit for scientific simulations. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 379(2197), 20200221.
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Article. Understanding the impact of exposure to adverse socioeconomic conditions on chronic stress from a complexity science perspective. BMC Medicine 19, 242.
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Article. Uncertainty quantification patterns for multiscale models. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 379(2197), 20200072.
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Proceedings. Uncertainty Quantification of Coupled 1D Arterial Blood Flow and 3D Tissue Perfusion Models Using the INSIST Framework. In: Computational Science – ICCS 2021. ISBN 9783030779801. VI, pp. 691-697.
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Article. Two-community noisy Kuramoto model with general interaction strengths. II. Chaos 31(3), 033116.
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Article. Two-community noisy Kuramoto model with general interaction strengths. I. Chaos 31(3), 033115.
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Proceedings. Two-Way Coupling Between 1D Blood Flow and 3D Tissue Perfusion Models. In: Computational Science – ICCS 2021. ISBN 9783030779672. III, pp. 670-683.
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Article. Tutorial applications for Verification, Validation and Uncertainty Quantification using VECMA toolkit. Journal of Computational Science 53, 101402.
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Article. The non-linear impact of data handling on network diffusion models. Patterns 2(12), 100397.
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Article. The influence of external electric fields on proton transfer tautomerism in the guanine-cytosine base pair. Physical Chemistry Chemical Physics 23(10), pp. 6252-6265.
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Article. The impact of uncertainty on predictions of the CovidSim epidemiological code. Nature Computational Science 1(2), pp. 128-135.
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Article. The Effects of Micro-vessel Curvature Induced Elongational Flows on Platelet Adhesion. Annals of Biomedical Engineering 49(12), p. 3609–3620.
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Article. The Bacteriostatic Activity of 2-Phenylethanol Derivatives Correlates with Membrane Binding Affinity. Membranes 11(4), 254.
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Report. Strategies of Change.
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Article. State-space models reveal bursty movement behaviour of dance event visitors. EPJ Data Science 10, 35.
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Article. Spontaneous cooperation for public goods. Journal of Mathematical Sociology 45(3), pp. 183-191.
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Article. Segregation and clustering of preferences erode socially beneficial coordination. Proceedings of the National Academy of Sciences of the United States of America 118(50), e2102153118.
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Article. Reweighting non-equilibrium steady-state dynamics along collective variables. Journal of Chemical Physics 154(13), 134105.
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Proceedings. Rethinking Value - value circuit in a Circular Economy. In: 37th EBES Conference Proceedings. 37-II, pp. 1115-1128.
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Article. Reliability and reproducibility in computational science: implementing validation, verification and uncertainty quantification in silico. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 379(2197), 20200409.
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Article. Quantitative 3D analysis of tissue damage in a rat model of microembolization. Journal of Biomechanics 128, 110723.
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Article. Principles governing control of aggregation and dispersion of aqueous graphene oxide. Scientific Reports 11(1), 22460.
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Proceedings. Preface. In: Computational Science – ICCS 2021. ISBN 9783030779672. III, pp. v-vi.
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Proceedings. Preface. In: Computational Science – ICCS 2021. ISBN 9783030779610. I, pp. v-vi.
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Proceedings. Preface. In: Computational Science – ICCS 2021. ISBN 9783030779702. IV, pp. v-vi.
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Proceedings. Preface. In: Computational Science – ICCS 2021. ISBN 9783030779641. II, pp. v-vi.
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Proceedings. Preface. In: Computational Science – ICCS 2021. ISBN 9783030779801. VI, pp. v-vi.
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Proceedings. Preface. In: Computational Science – ICCS 2021. ISBN 9783030779771. V, pp. v-vi.
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Proceedings. Personal Commitment and performance improvement : a new evaluation. In: Proceedings of the 2021 SIGED International Conference on Information Systems Education and Research. ISBN 9781734312324. pp. 237-248.