Publications of the CSL group

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2021

• Article
  P. Rutten, M. H. Lees, S. Klous, and P. M. A. Sloot. Intermittent and persistent movement patterns of dance event visitors in large sporting venues. Physica A : Statistical Mechanics and its Applications 563, 125448.
  Abstract Citation Links

2020

• Article
  D. Roy and M. Lees. Understanding resilience in slums using an agent-based model. Computers, Environment and Urban Systems 80, 101458.
  Abstract Citation Links
• PhD Thesis
  A. Nikishova. Uncertainty quantification of multiscale models. ISBN 9789402819182. Supervised by A. G. Hoekstra and P. V. Coveney.
  Abstract Citation
• Article
  B. Czaja, M. Gutierrez, G. Závodszky, D. de Kanter, A. Hoekstra, and O. Eniola-Adefeso. The influence of red blood cell deformability on hematocrit profiles and platelet margination. PLoS Computational Biology 16(3), e1007716.
  Abstract Citation Links
• Article
  V. R. Melnikov, V. V. Krzhizhanovskaya, M. H. Lees, and P. M. A. Sloot. The impact of pace of life on pedestrian heat stress: A computational modelling approach. Environmental Research 186, 109397.
  Abstract Citation Links
• Article
  Jeroen Bruggeman, Rudolf Sprik, and Rick Quax. Spontaneous cooperation for public goods. Journal of Mathematical Sociology .
  Citation Links
• Article
  L. Crielaard, P. Dutta, R. Quax, M. Nicolaou, N. Merabet, K. Stronks, and P. M. A. Sloot. Social norms and obesity prevalence: From cohort to system dynamics models. Obesity Reviews 21(9), e13044.
  Abstract Citation Links
• Article
  A. Nikishova, G. E. Comi, and A. G. Hoekstra. Sensitivity analysis based dimension reduction of multiscale models. Mathematics and Computers in Simulation 170, pp. 205-220.
  Abstract Citation Links
• PhD Thesis
  I. Anagnostou. Risk management in trading activities through the lens of complex systems theory. ISBN 9789464211009. Supervised by B. D. Kandhai and A. G. Hoekstra.
  Abstract Citation
• Article
  Martin Girard and Tristan Bereau. Regulating Lipid Composition Rationalizes Acyl Tail Saturation Homeostasis in Ectotherms. Biophysical Journal 119(5), pp. 892-899.
  Abstract Citation Links
• Article
  A. M. Shibeko, B. Chopard, A. G. Hoekstra, and M. A. Panteleev. Redistribution of TPA Fluxes in the Presence of PAI-1 Regulates Spatial Thrombolysis. Biophysical Journal 119(3), pp. 638-651.
  Abstract Citation Links
• Article
  Omri Har-Shemesh, Rick Quax, J. Stephen Lansing, and Peter M. A. Sloot. Questionnaire data analysis using information geometry. Scientific Reports 10, 8633.
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• Article
  S. Sourabh, Markus Hofer, and B. D. Kandhai. Quantifying systemic risk using Bayesian networks. Risk.net .
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• Article
  A. H. R. Koch, S. Morsbach, T. Bereau, G. Lévêque, H.-J. Butt, M. Deserno, K. Landfester, and G. Fytas. Probing Nanoparticle/Membrane Interactions by Combining Amphiphilic Diblock Copolymer Assembly and Plasmonics. The journal of Physical Chemistry. B 124(5), pp. 742-750.
  Abstract Citation Links
• PhD Thesis
  B. J. M. van Rooij. Platelet adhesion and aggregation in high shear blood flow. ISBN 9789402820287. Supervised by A. G. Hoekstra and G. Závodszky.
  Abstract Citation
• Article
  Christian Hoffmann, Alessia Centi, Roberto Menichetti, and Tristan Bereau. Molecular dynamics trajectories for 630 coarse-grained drug-membrane permeations. Scientific Data 7(1).
  Abstract Citation Links
• PhD Thesis
  V. Sivadasan. Microstructure dynamics in shear thickening suspensions. ISBN 9789402818611. Supervised by A. G. Hoekstra and D. Bonn.
  Abstract Citation
• Article
  Jeroen F. Uleman, René J. F. Melis, Rick Quax, Eddy A. van der Zee, Dick Thijssen, Martin Dresler, Ondine van de Rest, Isabelle F. van der Velpen, Hieab H. H. Adams, Ben Schmand, Inge M. C. M. de Kok, Jeroen de Bresser, Edo Richard, Marcel Verbeek, Alfons G. Hoekstra, Etiënne A. J. A. Rouwette, and Marcel G. M. Olde Rikkert. Mapping the multicausality of Alzheimer’s disease through group model building. GeroScience .
  Abstract Citation Links
• Article
  C. Scherer, R. Scheid, D. Andrienko, and T. Bereau. Kernel-Based Machine Learning for Efficient Simulations of Molecular Liquids. Journal of Chemical Theory and Computation 16(5), pp. 3194-3204.
  Abstract Citation Links
• Article
  Kevin de Vries, Anna Nikishova, Benjamin Czaja, Gábor Závodszky, and Alfons G Hoekstra. Inverse Uncertainty Quantification of a cell model using a Gaussian Process metamodel. International Journal for Uncertainty Quantification 10(4).
  Citation
• Article
  A. Centi, A. Dutta, S. H. Parekh, and T. Bereau. Inserting Small Molecules across Membrane Mixtures. Biophysical Journal 118(6), pp. 1321-1332.
  Abstract Citation Links
• Article
  P. R. Konduri, H. A. Marquering, E. E. van Bavel, A. Hoekstra, C. B. L. M. Majoie, R. Padmos, and V. Azizi. In-Silico Trials for Treatment of Acute Ischemic Stroke. Frontiers in Neurology 11, 558125.
  Abstract Citation Links
• Article
  O. Metsker, K. Magoev, A. Yakovlev, S. Yanishevskiy, G. Kopanitsa, S. Kovalchuk, and V. V. Krzhizhanovskaya. Identification of risk factors for patients with diabetes: diabetic polyneuropathy case study. BMC Medical Informatics and Decision Making 20, 201.
  Abstract Citation Links
• Article
  B. Csippa, D. Gyürki, G. Závodszky, I. Szikora, and G. Paál. Hydrodynamic Resistance of Intracranial Flow-Diverter Stents. Cardiovascular Engineering and Technology 11(1), pp. 1-13.
  Abstract Citation Links
• Article
  C. Rauer and T. Bereau. Hydration free energies from kernel-based machine learning: Compound-database bias. Journal of Chemical Physics 153(1), 014101.
  Abstract Citation Links
• Article
  Chan Liu, Jan Gerit Brandenburg, Omar Valsson, Kurt Kremer, and Tristan Bereau. Free-energy landscape of polymer-crystal polymorphism. Soft Matter 16(42), pp. 9683-9692.
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• Article
  J. J. Lever, I. A. van de Leemput, E. Weinans, R. Quax, V. Dakos, E. H. van Nes, J. Bascompte, and M. Scheffer. Foreseeing the future of mutualistic communities beyond collapse. Ecology Letters 23(1), pp. 2-15.
  Abstract Citation Links
• Proceedings
  Lourens E. Veen and Alfons G. Hoekstra. Easing Multiscale Model Design and Coupling with MUSCLE 3. In: Computational Science – ICCS 2020. ISBN 9783030504335. VI, pp. 425-438.
  Abstract Citation Links
• Proceedings
  B. Nannes, R. Quax, H. Ashikaga, M. Hocini, R. Dubois, O. Bernus, and M. Haïssaguerre. Early signs of critical slowing down in heart surface electrograms of ventricular fibrillation victims. In: Computational Science – ICCS 2020. ISBN 9783030504236. IV, pp. 334-347.
  Abstract Citation Links
• Proceedings
  A. Presbitero, R. Quax, V. V. Krzhizhanovskaya, and P. M. A. Sloot. Detecting critical transitions in the human innate immune system post-cardiac surgery. In: Computational Science – ICCS 2020. ISBN 9783030503710. I, pp. 371-384.
  Abstract Citation Links
• Article
  J. W. Barnett, C. R. Bilchak, Y. Wang, B. C. Benicewicz, L. A. Murdock, T. Bereau, and S. K. Kumar. Designing exceptional gas-separation polymer membranes using machine learning. Sciences advances 6(20), eaaz4301.
  Abstract Citation Links
• Article
  Chuan Hao Tan, Hyun-Suk Oh, V. S. Muniraj Sheraton, E. Mancini, Say Chye Joachim Loo, Staffan Kjelleberg, P. M. A. Sloot, and Scott Rice. Convection and the Extracellular Matrix Dictate Inter- and Intra-Biofilm Quorum Sensing Communication in Environmental Systems. Environmental Science and Technology 54(11), p. 6730–6740.
  Abstract Citation Links
• Article
  I. Anagnostou, J. Sanchez Rivero, S. Sourabh, and D. Kandhai. Contagious defaults in a credit portfolio: a Bayesian network approach. Journal of Credit Risk 16(1), pp. 1-26.
  Abstract Citation Links
• Article
  P. J. S. Cardoso, J. M. F. Rodrigues, J. Monteiro, R. Lam, V. V. Krzhizhanovskaya, M. H. Lees, J. Dongarra, and P. M. A. Sloot. Computational Science in the Interconnected World: Selected papers from 2019 International Conference on Computational Science. Journal of Computational Science 47, 101222.
  Citation Links
• Article
  J. Burger, D. C. van der Veen, D. J. Robinaugh, R. Quax, H. Riese, R. A. Schoevers, and S. Epskamp. Bridging the gap between complexity science and clinical practice by formalizing idiographic theories: a computational model of functional analysis. BMC Medicine 18, 99.
  Abstract Citation Links
• Article
  D. Roy, D. Bernal, and M. Lees. An exploratory factor analysis model for slum severity index in Mexico City. Urban Studies 57(4), pp. 789-805.
  Abstract Citation Links
• Article
  P. S. Zun, A. J. Narracott, P. C. Evans, B. J. M. van Rooij, and A. G. Hoekstra. A particle-based model for endothelial cell migration under flow conditions. Biomechanics and Modeling in Mechanobiology 19(2), pp. 681-692.
  Abstract Citation Links
• Article
  G. Závodszky, B. Csippa, G. Paál, and I. Szikora. A novel virtual flow diverter implantation method with realistic deployment mechanics and validated force response. International Journal for Numerical Methods in Biomedical Engineering 36(6), e3340.
  Abstract Citation Links
• Proceedings
  B. Czaja, G. Závodszky, and A. Hoekstra. A Heterogeneous Multi-scale Model for Blood Flow. In: Computational Science – ICCS 2020. ISBN 9783030504335. VI, pp. 403-409.
  Abstract Citation Links
• Article
  Sergey V. Kovalchuk, Valeria V. Krzhizhanovskaya, and Peter M. A. Sloot. 20 years of computational Science. Journal of Computational Science .
  Citation Links

2019

• Article
  Saad Alowayyed, Maxime Vassaux, Ben Czaja, Peter V. Coveney, and Alfons G. Hoekstra. Towards heterogeneous multi-scale computing on large scale parallel supercomputers. Supercomputing Frontiers and Innovations 6(4), pp. 20-43.
  Abstract Citation Links
• PhD Thesis
  V. Sheraton Muniraj. The emergence of biofilms. Supervised by P. M. A. Sloot.
  Abstract Citation
• Article
  V. Sivadasan, E. Lorenz, A. G. Hoekstra, and D. Bonn. Shear thickening of dense suspensions: The role of friction. Physics of Fluids 31(10), 103103.
  Abstract Citation Links
• Article
  A. Nikishova and A. G. Hoekstra. Semi-intrusive uncertainty propagation for multiscale models. Journal of Computational Science 35, pp. 80-90.
  Abstract Citation Links
• Article
  A. Nikishova, L. Veen, P. Zun, and A. G. Hoekstra. Semi-intrusive multiscale metamodelling uncertainty quantification with application to a model of in-stent restenosis. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 377(2142), 2018154.
  Abstract Citation Links
• Article
  S. V. Kovalchuk, V. V. Krzhizhanovskaya, Y. Shi, H. Fua, M. H. Lees, J. Dongarra, and P. M. A. Sloot. Science at the intersection of data, modelling, and computation. Journal of Computational Science 34, pp. 117-119.
  Citation Links
• Article
  I. Anagnostou and D. Kandhai. Risk Factor Evolution for Counterparty Credit Risk under a Hidden Markov Model. Risks 7(2), 66.
  Abstract Citation Links
• Article
  Roberto Menichetti and Tristan Bereau. Revisiting the Meyer-Overton rule for drug-membrane permeabilities. Molecular Physics 117(20), pp. 2900-2909.
  Abstract Citation Links
• Article
  Kiran H. Kanekal and Tristan Bereau. Resolution limit of data-driven coarse-grained models spanning chemical space. Journal of Chemical Physics 151(16), 164106.
  Abstract Citation Links
• Article
  G. Závodszky, B. van Rooij, B. Czaja, V. Azizi, D. de Kanter, and A. G. Hoekstra. Red blood cell and platelet diffusivity and margination in the presence of cross-stream gradients in blood flows. Physics of Fluids 31(3), 031903.
  Abstract Citation Links
• Article
  M. V. Sheraton, V. R. Melnikov, and P. M. A. Sloot. Prediction and quantification of bacterial biofilm detachment using Glazier-Graner–Hogeweg method based model simulations. Journal of Theoretical Biology 482, 109994.
  Abstract Citation Links
• Article
  S. Alowayyed, T. Piontek, J. L. Suter, O. Hoenen, D. Groen, O. Luk, B. Bosak, P. Kopta, K. Kurowski, O. Perks, K. Brabazon, V. Jancauskas, D. Coster, P. V. Coveney, and A. G. Hoekstra. Patterns for High Performance Multiscale Computing. Future Generation Computer Systems 91, pp. 335-346.
  Abstract Citation Links
• Proceedings
  V. Azizi Tarksalooyeh, G. Závodszky, and A. G. Hoekstra. Optimizing Parallel Performance of the Cell Based Blood Flow Simulation Software HemoCell. In: Computational Science – ICCS 2019. ISBN 9783030227449. 3, pp. 537-547.
  Abstract Citation Links
• Article
  A. G. Hoekstra, S. Portegies Zwart, and P. V. Coveney. Multiscale modelling, simulation and computing: from the desktop to the exascale. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 377(2142), 20180355.
  Abstract Citation Links
• Article
  A. G. Hoekstra, B. Chopard, D. Coster, S. Portegies Zwart, and P. V. Coveney. Multiscale computing for science and engineering in the era of exascale performance. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 377(2142), 20180144.
  Abstract Citation Links
• Article
  P. Berg, S. Voß, G. Janiga, S. Saalfeld, A. W. Bergersen, K. Valen-Sendstad, J. Bruening, L. Goubergrits, A. Spuler, T. L. Chiu, A. C. O. Tsang, G. Copelli, B. Csippa, G. Paál, G. Závodszky, F. J. Detmer, B. J. Chung, J. R. Cebral, S. Fujimura, H. Takao, C. Karmonik, S. Elias, N. M. Cancelliere, M. Najafi, D. A. Steinman, V. M. Pereira, S. Piskin, E. A. Finol, M. Pravdivtseva, P. Velvaluri, H. Rajabzadeh-Oghaz, N. Paliwal, H. Meng, S. Seshadhri, S. Venguru, M. Shojima, S. Sindeev, S. Frolov, Y. Qian, Y.-A. Wu, K. D. Carlson, D. F. Kallmes, D. Dragomir-Daescu, and O. Beuing. Multiple Aneurysms AnaTomy CHallenge 2018 (MATCH)—phase II: rupture risk assessment. International Journal of Computer Assisted Radiology and Surgery 14(10), p. 1795–1804.
  Abstract Citation Links
• Article
  W. R. J. Vermeulen, D. Roy, and R. Quax. Modelling the Influence of Regional Identity on Human Migration. Urban Science 3(3), 78.
  Abstract Citation Links
• Article
  V. Prana, P. Tieri, M. C. Palumbo, E. Mancini, and F. Castiglione. Modeling the effect of high calorie diet on the interplay between adipose tissue, inflammation and diabetes. Computational and Mathematical Methods in Medicine 2019, 7525834.
  Abstract Citation Links
• Proceedings
  Sara Shakeri, Valentina Maccatrozzo, Lourens Veen, Rena Bakhshi, Leon Gommans, Cees De Laat, and Paola Grosso. Modeling and matching digital data marketplace policies. In: Proceedings - IEEE 15th International Conference on eScience, eScience 2019. ISBN 9781728124513. pp. 570-577.
  Abstract Citation Links
• Article
  Marius Bause, Timon Wittenstein, Kurt Kremer, and Tristan Bereau. Microscopic reweighting for nonequilibrium steady-state dynamics. Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 100(6), 060103.
  Abstract Citation Links
• Article
  Z. Huang, E. Lum, G. Jimenez, M. Semwal, P. Sloot, and J. Car. Medication management support in diabetes: a systematic assessment of diabetes self-management apps. BMC Medicine 17, 127.
  Abstract Citation Links
• Article
  E. Caroselli, F. Gizzi, F. Prada, C. Marchini, V. Airi, J. Kaandorp, G. Falini, Z. Dubinsky, and S. Goffredo. Low and variable pH decreases recruitment efficiency in populations of a temperate coral naturally present at CO2 vent. Limnology and Oceanography 64(3), pp. 1059-1069.
  Abstract Citation Links
• Article
  P. S. Zun, A. J. Narracott, C. Chiastra, J. Gunn, and A. G. Hoekstra. Location-Specific Comparison Between a 3D In-Stent Restenosis Model and Micro-CT and Histology Data from Porcine In Vivo Experiments. Cardiovascular Engineering and Technology 10(4), p. 568–582.
  Abstract Citation Links
• Proceedings
  D. Groen, R. A. Richardson, D. W. Wright, V. Jancauskas, R. Sinclair, P. Karlshoefer, M. Vassaux, H. Arabnejad, T. Piontek, P. Kopta, B. Bosak, J. Lakhlili, O. Hoenen, D. Suleimenova, W. Edeling, D. Crommelin, A. Nikishova, and P. V. Coveney. Introducing VECMAtk - Verification, Validation and Uncertainty Quantification for Multiscale and HPC Simulations. In: Computational Science – ICCS 2019. ISBN 9783030227470. IV, pp. 479-492.
  Abstract Citation Links
• Article
  J. Runge, S. Bathiany, E. Bollt, G. Camps-Valls, D. Coumou, E. Deyle, C. Glymour, M. Kretschmer, M. D. Mahecha, J. Muñoz-Marí, E. H. van Nes, J. Peters, R. Quax, M. Reichstein, M. Scheffer, B. Schölkopf, P. Spirtes, G. Sugihara, J. Sun, K. Zhang, and J. Zscheischler. Inferring causation from time series in Earth system sciences. Nature Communications 10, 2553.
  Abstract Citation Links
• Article
  E. Ranguelova, B. Weel, D. Roy, M. Kuffer, K. Pfeffer, and M. Lees. Image Based Classification of Slums, Built-Up and Non-Built-Up Areas in Kalyan and Bangalore, India. European Journal of Remote Sensing 52(S1), pp. 40-61.
  Abstract Citation Links
• Article
  B. J. M. van Rooij, G. Závodszky, V. W. Azizi Tarksalooyeh, and A. G. Hoekstra. Identifying the start of a platelet aggregate by the shear rate and the cell-depleted layer. Journal of the Royal Society Interface 16(159), 20190148.
  Abstract Citation Links
• Article
  Martin Girard, Ali Ehlen, Anisha Shakya, Tristan Bereau, and Monica Olvera de la Cruz. Hoobas. Computational materials science 167, pp. 25-33.
  Abstract Citation Links
• Article
  Alva Presbitero, Emiliano Mancini, Filippo Castiglione, Valeria V Krzhizhanovskaya, and Rick Quax. Game of neutrophils: modeling the balance between apoptosis and necrosis. BMC Bioinformatics 20(Suppl 6), p. 475.
  Abstract Citation Links
• Article
  E. Weinans, J. J. Lever, S. Bathiany, R. Quax, J. Bascompte, E. H. van Nes, M. Scheffer, and I. A. van de Leemput. Finding the direction of lowest resilience in multivariate complex systems. Journal of the Royal Society Interface 16(159), 20190629.
  Abstract Citation Links
• Article
  Svenja J. Wörner, Tristan Bereau, Kurt Kremer, and Joseph F. Rudzinski. Direct route to reproducing pair distribution functions with coarse-grained models via transformed atomistic cross correlations. Journal of Chemical Physics 151(24), 244110.
  Abstract Citation Links
• Article
  J. Wang, M. Kuffer, D. Roy, and K. Pfeffer. Deprivation pockets through the lens of convolutional neural networks. Remote Sensing of the Environment 234, 111448.
  Abstract Citation Links
• Article
  Christian Hoffmann, Roberto Menichetti, Kiran H. Kanekal, and Tristan Bereau. Controlled exploration of chemical space by machine learning of coarse-grained representations. Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 100(3), 033302.
  Abstract Citation Links
• Article
  Marcel G M Olde Rikkert, P. M. van Zuijlen, Marinus de Kleuver, Ariëtte van Reekum, A. G. Hoekstra, and P. M. A. Sloot. Complexiteit van ziekten. Nederlands Tijdschrift voor Geneeskunde 163(35), D3970.
  Citation Links
• Chapter
  G. Moysiadis, I. Anagnostou, and D. Kandhai. Calibrating the Mean-Reversion Parameter in the Hull-White Model Using Neural Networks. In: ECML PKDD 2018 Workshops. ISBN 9783030134631. pp. 23-36.
  Abstract Citation Links
• Article
  P. Dutta, L. Ma, Y. Ali, P. M. A. Sloot, and J. Zheng. Boolean network modeling of β-cell apoptosis and insulin resistance in type 2 diabetes mellitus. BMC Systems Biology 13(Supplement 2), 36.
  Abstract Citation Links
• Article
  Z. Huang, E. Tan, E. Lum, P. Sloot, B. O. Boehm, and J. Car. A Smartphone App to Improve Medication Adherence in Patients With Type 2 Diabetes in Asia. JMIR mHealth and uHealth 7(9), e14914.
  Abstract Citation Links
• PhD Thesis
  P. Zun. 3D modelling of in-stent restenosis. Supervised by A. G. Hoekstra, A. V. Boukhanovsky, and A. Svitenkov.
  Abstract Citation

2018

• Proceedings
  M. Glombek, J. R. Helmus, M. Lees, R. van den Hoed, and R. Quax. Vulnerability Of Charging Infrastructure, A Novel Approach For Improving Charging Station Deployment. In: Proceedings of 7th Transport Research Arena TRA 2018.
  Abstract Citation Links
• Article
  A. G. Hoekstra, E. T. van Bavel, M. Siebes, F. Gijsen, and L. Geris. Virtual physiological human 2016: translating the virtual physiological human to the clinic. Interface Focus 8(1), 20170067.
  Citation Links
• Article
  A. V. Boukhanovsky, V. V. Krzhizhanovskaya, and M. Bubak. Urgent computing for decision support in critical situations. Future Generation Computer Systems 79(1), pp. 111-113.
  Abstract Citation Links
• Proceedings
  J. S. Y. Tan, G. Závodszky, and P. M. A. Sloot. Understanding Malaria Induced Red Blood Cell Deformation Using Data-Driven Lattice Boltzmann Simulations. In: Computational Science – ICCS 2018. ISBN 9783319936987. pp. 392-403.
  Abstract Citation Links
• Article
  A. Nikishova, L. Veen, P. Zun, and A. G. Hoekstra. Uncertainty Quantification of a Multiscale Model for In-Stent Restenosis. Cardiovascular Engineering and Technology 9(4), pp. 761-774.
  Abstract Citation Links
• PhD Thesis
  A. M. Abdol. Toward reverse engineering spatiotemporal gene regulatory networks of Nematostella vectensis. ISBN 9789402810110. Supervised by P. M. A. Sloot and J. A. Kaandorp.
  Abstract Citation
• Article
  S. V. Kovalchuk, V. V. Krzhizhanovskaya, P. Koumoutsakos, E. Chatzi, M. H. Lees, J. Dongarra, and P. M. A. Sloot. The art of computational science: Bridging gaps – forming alloys. Journal of Computational Science 26, pp. 190-192.
  Citation Links
• Article
  A. G. Hoekstra, F. van de Vosse, and O. Röhrle. The Virtual Physiological Human Conference 2016. Journal of Computational Science 24, pp. 65-67.
  Citation Links
• Article
  V. Melnikov, V. V. Krzhizhanovskaya, M. H. Lees, and P. M. A. Sloot. System dynamics of human body thermal regulation in outdoor environments. Building and Environment 143, pp. 760-769.
  Abstract Citation Links
• Article
  D. Roy, B. Palavalli, N. Menon, R. King, K. Pfeffer, M. Lees, and P. M. A. Sloot. Survey-based socio-economic data from slums in Bangalore, India. Scientific Data 5, 170200.
  Abstract Citation Links
• Article
  A. Presbitero, E. Mancini, R. Brands, V. V. Krzhizhanovskaya, and P. M. A. Sloot. Supplemented alkaline phosphatase supports the immune response in patients undergoing cardiac surgery: Clinical and computational evidence. Frontiers in Immunology 9, 2342.
  Abstract Citation Links
• Article
  Joseph F. Rudzinski and Tristan Bereau. Structural-kinetic-thermodynamic relationships identified from physics-based molecular simulation models. Journal of Chemical Physics 148(20), 204111.
  Abstract Citation Links
• Article
  D. Roy, M. H. Lees, K. Pfeffer, and P. M. A. Sloot. Spatial segregation, inequality, and opportunity bias in the slums of Bengaluru. Cities : The International Journal of Urban Policy and Planning 74, pp. 269-276.
  Abstract Citation Links
• Article
  C. Reeb, J. Kaandorp, F. Jansson, N. Puillandre, J.-Y. Dubuisson, R. Cornette, F. Jabbour, Y. Coudert, J. Patiño, J.-F. Flot, and A. Vanderpoorten. Quantification of complex modular architecture in plants. New Phytologist 218(2), pp. 859-872.
  Abstract Citation Links
• Article
  Chan Liu, Kurt Kremer, and Tristan Bereau. Polymorphism of Syndiotactic Polystyrene Crystals from Multiscale Simulations. Advanced Theory and Simulations 1(7), 1800024.
  Abstract Citation Links
• PhD Thesis
  S. A. Alowayyed. Patterns for multiscale computing. ISBN 9789463234092. Supervised by P. M. A. Sloot and A. G. Hoekstra.
  Abstract Citation
• Article
  M. de Haan, G. Zavodszky, V. Azizi, and A. G. Hoekstra. Numerical investigation of the effects of red blood cell cytoplasmic viscosity contrasts on single cell and bulk transport behaviour. Applied Sciences 8(9), 1616.
  Abstract Citation Links
• Article
  B. Chopard, J.-L. Falcone, P. Kunzli, L. Veen, and A. G. Hoekstra. Multiscale Modeling: recent progress and open questions. Multiscale and Multidisciplinary Modeling, Experiments and Design 1(1), p. 57–68.
  Abstract Citation Links
• Article
  D. Slavkov, N. Carrillo-Zapata, N. Carranza, X. Diego, F. Jansson, J. Kaandorp, S. Hauert, and J. Sharpe. Morphogenesis in Robot Swarms. Science Robotics 3(25), eaau9178.
  Abstract Citation Links
• Article
  A. V. Presbitero, E. Mancini, and V. V. Krzhizhanovskaya. Modelling Neutrophils' Response to Various Levels of Insults. Procedia Computer Science 136, pp. 390-397.
  Abstract Citation Links
• Article
  M. V. Sheraton, J. K. H. Yam, H. S. Oh, E. Mancini, L. Yang, S. A. Rice, and P. M. A. Sloot. Mesoscopic Energy Minimization Drives Pseudomonas aeruginosa Biofilm Morphologies and Consequent Stratification of Antibiotic Activity Based on Cell Metabolism. Antimicrobial Agents and Chemotherapy 62(4), e02544-17.
  Abstract Citation Links
• Article
  S. Alowayyed, G. Závodszky, V. Azizi, and A. G. Hoekstra. Load balancing of parallel cell-based blood flow simulations. Journal of Computational Science 24, pp. 1-7.
  Abstract Citation Links

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