Publications of the CSL group

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2021

• Proceedings
  Max van der Kolk, C. M. Miller, R. M. Padmos, V. W. Azizi Tarksalooyeh, and A. G. Hoekstra. des-ist: A Simulation Framework to Streamline Event-Based In Silico Trials. In: Lecture Notes in Computer Science. ISBN 978-3-030-77967-2. 12744, pp. 648-654.
  Abstract Citation Links
• Article
  D. Ye, L. Veen, A. Nikishova, J. Lakhlili, W. Edeling, O. O. Luk, V. V. Krzhizhanovskaya, and A. G. Hoekstra. Uncertainty quantification patterns for multiscale models. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 379(2197), 20200072.
  Abstract Citation Links
• Proceedings
  Claire Miller, Max van der Kolk, Raymond Padmos, Tamás Józsa, and Alfons Hoekstra. Uncertainty Quantification of Coupled 1D Arterial Blood Flow and 3D Tissue Perfusion Models Using the INSIST Framework. In: Computational Science ICCS 2021. ISBN 978-3-030-77980-1. pp. 691-697.
  Abstract Citation Links
• Article
  Stefan Achterhof and J. M. Meylahn. Two-community noisy Kuramoto model with general interaction strengths: Part II. Chaos 31, 033116.
  Abstract Citation Links
• Article
  Stefan Achterhof and J. M. Meylahn. Two-community noisy Kuramoto model with general interaction strengths: Part I. Chaos 31, 033115.
  Abstract Citation Links
• Proceedings
  R. M. Padmos, Tamás I. Józsa, Wahbi K. El-Bouri, G. Závodszky, Stephen J. Payne, and A. G. Hoekstra. Two-Way Coupling Between 1D Blood Flow and 3D Tissue Perfusion Models. In: Lecture Notes in Computer Science. ISBN 978-3-030-77967-2. 12744, pp. 670-683.
  Abstract Citation Links
• Article
  Diana Suleimenova, Hamid Arabnejad, Wouter N. Edeling, David Coster, Onnie O. Luk, Jalal Lakhlili, Vytautas Jancauskas, Michal Kulczewski, Lourens Veen, Dongwei Ye, Pavel Zun, Valeria Krzhizhanovskaya, Alfons Hoekstra, Daan Crommelin, Peter V. Coveney, and Derek Groen. Tutorial applications for Verification, Validation and Uncertainty Quantification using VECMA toolkit. Journal of Computational Science 53, 101402.
  Abstract Citation Links
• Article
  UnYoung Chavez-Baldini, Dorien H Nieman, Amos Keestra, Anja Lok, Roel J T Mocking, Pelle de Koning, Valeria V Krzhizhanovskaya, Claudi L H Bockting, Geeske van Rooijen, Dirk J A Smit, Arjen L Sutterland, Karin J H Verweij, Guido van Wingen, Johanna T W Wigman, Nienke C Vulink, and Damiaan Denys. The relationship between cognitive functioning and psychopathology in patients with psychiatric disorders. Psychological Medicine pp. 1-10.
  Abstract Citation Links
• Article
  Isabel S. Kleinwächter, Stefanie Pannwitt, Alessia Centi, Nadja Hellmann, Eckhard Thines, Tristan Bereau, and Dirk Schneider. The bacteriostatic activity of 2-phenylethanol derivatives correlates with membrane binding affinity. Membranes 11(4), 254.
  Abstract Citation Links
• Article
  P. Rutten, M. H. Lees, S. Klous, and P. M. A. Sloot. State-space models reveal bursty movement behaviour of dance event visitors. EPJ Data Science 10(35), 35.
  Abstract Citation Links
• Article
  J. Bruggeman, R. Sprik, and R. Quax. Spontaneous cooperation for public goods. Journal of Mathematical Sociology 45(3), pp. 183-191.
  Abstract Citation Links
• Article
  Marius Bause and Tristan Bereau. Reweighting non-equilibrium steady-state dynamics along collective variables. Journal of Chemical Physics 154(13), 134105.
  Abstract Citation Links
• Article
  Tamás I. Józsa, R. M. Padmos, Wahbi K. El-Bouri, A. G. Hoekstra, and Stephen J. Payne. On the Sensitivity Analysis of Porous Finite Element Models for Cerebral Perfusion Estimation. Annals of Biomedical Engineering .
  Abstract Citation Links
• Article
  Dongwei Ye, Anna Nikishova, Lourens Veen, Pavel Zun, and Alfons G. Hoekstra. Non-intrusive and semi-intrusive uncertainty quantification of a multiscale in-stent restenosis model. Reliability Engineering & System Safety 214, 107734.
  Abstract Citation Links
• Article
  Raymond M. Padmos, Nerea Arrarte Terreros, Tamás I. Józsa, Gábor Závodszky, Henk A. Marquering, Charles B. L. M. Majoie, and Alfons G. Hoekstra. Modelling the leptomeningeal collateral circulation during acute ischaemic stroke. Medical Engineering & Physics 91, pp. 1-11.
  Abstract Citation Links
• PhD Thesis
  M. Bause. Maximum caliber approach to reweight dynamics of non-equilibrium steady states. Supervised by T. Bereau and E. J. Meijer.
  Abstract Citation
• Article
  J. F. Uleman, R. J. F. Melis, R. Quax, E. A. van der Zee, D. Thijssen, M. Dresler, O. van de Rest, I. F. van der Velpen, H. H. H. Adams, B. Schmand, I. M. C. M. de Kok, J. de Bresser, E. Richard, M. Verbeek, A. G. Hoekstra, E. A. J. A. Rouwette, and M. G. M. Olde Rikkert. Mapping the multicausality of Alzheimer’s disease through group model building. GeroScience 43(2), p. 829–843.
  Abstract Citation Links
• Article
  P. Rutten, M. H. Lees, S. Klous, and P. M. A. Sloot. Intermittent and persistent movement patterns of dance event visitors in large sporting venues. Physica A : Statistical Mechanics and its Applications 563, 125448.
  Abstract Citation Links
• Article
  B. J. M. van Rooij, G. Závodszky, A. G. Hoekstra, and D. N. Ku. Haemodynamic flow conditions at the initiation of high-shear platelet aggregation: a combined in vitro and cellular in silico study. Interface Focus 11(1), 20190126.
  Abstract Citation Links
• Article
  C. E. S. Mattsson, F. W. Takes, E. M. Heemskerk, C. Diks, G. Buiten, A. Faber, and P. M. A. Sloot. Functional Structure in Production Networks. Frontiers in Big Data 4, 666712.
  Abstract Citation Links
• Article
  Martin Girard and Tristan Bereau. Finite-size transitions in complex membranes. Biophysical Journal 120(12), pp. 2436-2443.
  Abstract Citation Links
• Article
  Els Weinans, Rick Quax, Egbert H. van Nes, and Ingrid A. van de Leemput. Evaluating the performance of multivariate indicators of resilience loss. Scientific Reports 11(1), 9148.
  Abstract Citation Links
• Article
  J. Kwak, M. H. Lees, W. Cai, A. R. Pourghaderi, and M. E. H. Ong. Estimating horizontal movement performance of patient beds and the impact on emergency evacuation time. Safety Science 134, 105038.
  Abstract Citation Links
• Article
  Joseph F. Rudzinski, Sebastian Kloth, Svenja Wörner, Tamisra Pal, Kurt Kremer, Tristan Bereau, and Michael Vogel. Dynamical properties across different coarse-grained models for ionic liquids. Journal of Physics-Condensed Matter 33(22), 224001.
  Abstract Citation Links
• Article
  Arghya Dutta, Jilles Vreeken, Luca M. Ghiringhelli, and Tristan Bereau. Data-driven equation for drug-membrane permeability across drugs and membranes. Journal of Chemical Physics 154(24), 244114.
  Abstract Citation Links
• Article
  R. M. Padmos, T. I. Józsa, W. K. El-Bouri, P. R. Konduri, S. J. Payne, and A. G. Hoekstra. Coupling one-dimensional arterial blood flow to three-dimensional tissue perfusion models for in silico trials of acute ischaemic stroke. Interface Focus 11(1), 20190125.
  Abstract Citation Links
• Article
  Martin Girard and Tristan Bereau. Computer simulations of lipid regulation by molecular semigrand canonical ensembles. Biophysical Journal 120(12), pp. 2370-2373.
  Abstract Citation Links
• PhD Thesis
  V. Melnikov. Computational models of human response to urban heat. Supervised by P. M. A. Sloot, V. Krzhizhanovskaya, and M. H. Lees.
  Abstract Citation
• Article
  F. P. Pascoal Dos Santos, Simon A. Levin, and Vítor V. Vasconcelos. Biased perceptions explain collective action deadlocks and suggest new mechanisms to prompt cooperation. iScience 24(4), 102375.
  Abstract Citation Links
• Article
  Marc Stieffenhofer, Tristan Bereau, and Michael Wand. Adversarial reverse mapping of condensed-phase molecular structures. APL Materials 9(3), 031107.
  Abstract Citation Links
• Article
  Vadim A. Karatayev, Vítor V. Vasconcelos, Anne Sophie Lafuite, Simon A. Levin, Chris T. Bauch, and Madhur Anand. A well-timed shift from local to global agreements accelerates climate change mitigation. Nature Communications 12, 2908.
  Abstract Citation Links
• Article
  T. I. Józsa, R. M. Padmos, N. Samuels, W. K. El-Bouri, A. G. Hoekstra, and S. J. Payne. A porous circulation model of the human brain for in silico clinical trials in ischaemic stroke. Interface Focus 11(1), 20190127.
  Abstract Citation Links
• Article
  Sergey V. Kovalchuk, Valeria V. Krzhizhanovskaya, Maciej Paszyński, Gábor Závodszky, Michael H. Lees, Jack Dongarra, and Peter M. A. Sloot. 20 years of computational science. Journal of Computational Science 53, 101395.
  Citation Links

2020

• Article
  D. Roy and M. Lees. Understanding resilience in slums using an agent-based model. Computers, Environment and Urban Systems 80, 101458.
  Abstract Citation Links
• PhD Thesis
  A. Nikishova. Uncertainty quantification of multiscale models. ISBN 9789402819182. Supervised by A. G. Hoekstra and P. V. Coveney.
  Abstract Citation
• Article
  B. Czaja, M. Gutierrez, G. Závodszky, D. de Kanter, A. Hoekstra, and O. Eniola-Adefeso. The influence of red blood cell deformability on hematocrit profiles and platelet margination. PLoS Computational Biology 16(3), e1007716.
  Abstract Citation Links
• Article
  V. R. Melnikov, V. V. Krzhizhanovskaya, M. H. Lees, and P. M. A. Sloot. The impact of pace of life on pedestrian heat stress: A computational modelling approach. Environmental Research 186, 109397.
  Abstract Citation Links
• Article
  L. Crielaard, P. Dutta, R. Quax, M. Nicolaou, N. Merabet, K. Stronks, and P. M. A. Sloot. Social norms and obesity prevalence: From cohort to system dynamics models. Obesity Reviews 21(9), e13044.
  Abstract Citation Links
• Article
  A. Nikishova, G. E. Comi, and A. G. Hoekstra. Sensitivity analysis based dimension reduction of multiscale models. Mathematics and Computers in Simulation 170, pp. 205-220.
  Abstract Citation Links
• Proceedings
  I. Derevitskii, N. Kogtikov, M. H. Lees, W. Cai, and M. E. H. Ong. Risk-based AED placement - Singapore case. In: Computational Science – ICCS 2020. ISBN 9783030504236. IV, pp. 577-590.
  Abstract Citation Links
• PhD Thesis
  I. Anagnostou. Risk management in trading activities through the lens of complex systems theory. ISBN 9789464211009. Supervised by B. D. Kandhai and A. G. Hoekstra.
  Abstract Citation
• Article
  M. Girard and T. Bereau. Regulating Lipid Composition Rationalizes Acyl Tail Saturation Homeostasis in Ectotherms. Biophysical Journal 119(5), pp. 892-899.
  Abstract Citation Links
• Article
  M. Boersma, A. Maliutin, S. Sourabh, L. A. Hoogduin, and D. Kandhai. Reducing the complexity of financial networks using network embeddings. Scientific Reports 10, 17045.
  Abstract Citation Links
• Article
  A. M. Shibeko, B. Chopard, A. G. Hoekstra, and M. A. Panteleev. Redistribution of TPA Fluxes in the Presence of PAI-1 Regulates Spatial Thrombolysis. Biophysical Journal 119(3), pp. 638-651.
  Abstract Citation Links
• Article
  O. Har-Shemesh, R. Quax, J. S. Lansing, and P. M. A. Sloot. Questionnaire data analysis using information geometry. Scientific Reports 10, 8633.
  Abstract Citation Links
• Article
  S. Sourabh, Markus Hofer, and B. D. Kandhai. Quantifying systemic risk using Bayesian networks. Risk.net .
  Abstract Citation Links
• Article
  A. H. R. Koch, S. Morsbach, T. Bereau, G. Lévêque, H.-J. Butt, M. Deserno, K. Landfester, and G. Fytas. Probing Nanoparticle/Membrane Interactions by Combining Amphiphilic Diblock Copolymer Assembly and Plasmonics. The journal of Physical Chemistry. B 124(5), pp. 742-750.
  Abstract Citation Links
• PhD Thesis
  B. J. M. van Rooij. Platelet adhesion and aggregation in high shear blood flow. ISBN 9789402820287. Supervised by A. G. Hoekstra and G. Závodszky.
  Abstract Citation
• Article
  C. Hoffmann, A. Centi, R. Menichetti, and T. Bereau. Molecular dynamics trajectories for 630 coarse-grained drug-membrane permeations. Scientific Data 7, 51.
  Abstract Citation Links
• Proceedings
  J. Kwak, M. H. Lees, W. Cai, and M. E. H. Ong. Modeling helping behavior in emergency evacuations using volunteer’s dilemma game. In: Computational Science – ICCS 2020. ISBN 9783030503710. I, pp. 513-523.
  Abstract Citation Links
• PhD Thesis
  V. Sivadasan. Microstructure dynamics in shear thickening suspensions. ISBN 9789402818611. Supervised by A. G. Hoekstra and D. Bonn.
  Abstract Citation
• Article
  O. Severiukhina, S. Kesarev, K. Bochenina, A. Boukhanovsky, M. H. Lees, and P. M. A. Sloot. Large-scale forecasting of information spreading. Journal of Big Data 7, 72.
  Abstract Citation Links
• Article
  C. Scherer, R. Scheid, D. Andrienko, and T. Bereau. Kernel-Based Machine Learning for Efficient Simulations of Molecular Liquids. Journal of Chemical Theory and Computation 16(5), pp. 3194-3204.
  Abstract Citation Links
• Article
  K. de Vries, A. Nikishova, B. Czaja, G. Závodszky, and A. G. Hoekstra. Inverse Uncertainty Quantification of a cell model using a Gaussian Process metamodel. International Journal for Uncertainty Quantification 10(4), pp. 333-349.
  Abstract Citation Links
• Article
  A. Centi, A. Dutta, S. H. Parekh, and T. Bereau. Inserting Small Molecules across Membrane Mixtures. Biophysical Journal 118(6), pp. 1321-1332.
  Abstract Citation Links
• Article
  P. R. Konduri, H. A. Marquering, E. E. van Bavel, A. Hoekstra, C. B. L. M. Majoie, R. Padmos, and V. Azizi. In-Silico Trials for Treatment of Acute Ischemic Stroke. Frontiers in Neurology 11, 558125.
  Abstract Citation Links
• Article
  O. Metsker, K. Magoev, A. Yakovlev, S. Yanishevskiy, G. Kopanitsa, S. Kovalchuk, and V. V. Krzhizhanovskaya. Identification of risk factors for patients with diabetes: diabetic polyneuropathy case study. BMC Medical Informatics and Decision Making 20, 201.
  Abstract Citation Links
• Article
  B. Csippa, D. Gyürki, G. Závodszky, I. Szikora, and G. Paál. Hydrodynamic Resistance of Intracranial Flow-Diverter Stents. Cardiovascular Engineering and Technology 11(1), pp. 1-13.
  Abstract Citation Links
• Article
  C. Rauer and T. Bereau. Hydration free energies from kernel-based machine learning: Compound-database bias. Journal of Chemical Physics 153(1), 014101.
  Abstract Citation Links
• Article
  C. Liu, J. G. Brandenburg, O. Valsson, K. Kremer, and T. Bereau. Free-energy landscape of polymer-crystal polymorphism. Soft Matter 16(42), pp. 9683-9692.
  Abstract Citation Links
• Article
  J. J. Lever, I. A. van de Leemput, E. Weinans, R. Quax, V. Dakos, E. H. van Nes, J. Bascompte, and M. Scheffer. Foreseeing the future of mutualistic communities beyond collapse. Ecology Letters 23(1), pp. 2-15.
  Abstract Citation Links
• Article
  M. V. Sheraton, G. G. Y. Chiew, V. Melnikov, E. Y. Tan, K. Q. Luo, N. Verma, and P. M. A. Sloot. Emergence of spatio-temporal variations in chemotherapeutic drug efficacy: in-vitro and in-Silico 3D tumour spheroid studies. BMC Cancer 20, 1201.
  Abstract Citation Links
• Proceedings
  L. E. Veen and A. G. Hoekstra. Easing Multiscale Model Design and Coupling with MUSCLE 3. In: Computational Science – ICCS 2020. ISBN 9783030504335. VI, pp. 425-438.
  Abstract Citation Links
• Proceedings
  B. Nannes, R. Quax, H. Ashikaga, M. Hocini, R. Dubois, O. Bernus, and M. Haïssaguerre. Early signs of critical slowing down in heart surface electrograms of ventricular fibrillation victims. In: Computational Science – ICCS 2020. ISBN 9783030504236. IV, pp. 334-347.
  Abstract Citation Links
• Proceedings
  A. Presbitero, R. Quax, V. V. Krzhizhanovskaya, and P. M. A. Sloot. Detecting critical transitions in the human innate immune system post-cardiac surgery. In: Computational Science – ICCS 2020. ISBN 9783030503710. I, pp. 371-384.
  Abstract Citation Links
• Article
  J. W. Barnett, C. R. Bilchak, Y. Wang, B. C. Benicewicz, L. A. Murdock, T. Bereau, and S. K. Kumar. Designing exceptional gas-separation polymer membranes using machine learning. Sciences advances 6(20), eaaz4301.
  Abstract Citation Links
• Article
  C. H. Tan, H.-S. Oh, V. M. Sheraton, E. Mancini, S. C. J. Loo, S. Kjelleberg, P. M. A. Sloot, and S. A. Rice. Convection and the Extracellular Matrix Dictate Inter- and Intra-Biofilm Quorum Sensing Communication in Environmental Systems. Environmental Science and Technology 54(11), p. 6730–6740.
  Abstract Citation Links
• Article
  I. Anagnostou, J. Sanchez Rivero, S. Sourabh, and D. Kandhai. Contagious defaults in a credit portfolio: a Bayesian network approach. Journal of Credit Risk 16(1), pp. 1-26.
  Abstract Citation Links
• Article
  P. J. S. Cardoso, J. M. F. Rodrigues, J. Monteiro, R. Lam, V. V. Krzhizhanovskaya, M. H. Lees, J. Dongarra, and P. M. A. Sloot. Computational Science in the Interconnected World: Selected papers from 2019 International Conference on Computational Science. Journal of Computational Science 47, 101222.
  Citation Links
• Article
  J. F. Rudzinski and T. Bereau. Coarse-grained conformational surface hopping. Journal of Chemical Physics 153(21), 214110.
  Abstract Citation Links
• PhD Thesis
  B. E. Czaja. Cell resolved blood flow modeling with the Lattice Boltzmann method. ISBN 9789464211191. Supervised by A. G. Hoekstra and G. Závodszky.
  Abstract Citation
• Article
  D. W. Wright, R. A. Richardson, W. Edeling, J. Lakhlili, R. C. Sinclair, V. Jancauskas, D. Suleimenova, B. Bosak, M. Kulczewski, T. Piontek, P. Kopta, I. Chirca, H. Arabnejad, O. O. Luk, O. Hoenen, J. Węglarz, D. Crommelin, D. Groen, and P. V. Coveney. Building Confidence in Simulation: Applications of EasyVVUQ. Advanced Theory and Simulations 3(8), 1900246.
  Abstract Citation Links
• Article
  J. Burger, D. C. van der Veen, D. J. Robinaugh, R. Quax, H. Riese, R. A. Schoevers, and S. Epskamp. Bridging the gap between complexity science and clinical practice by formalizing idiographic theories: a computational model of functional analysis. BMC Medicine 18, 99.
  Abstract Citation Links
• Article
  B. J. M. van Rooij, G. Závodszky, A. G. Hoekstra, and D. N. Ku. Biorheology of occlusive thrombi formation under high shear: in vitro growth and shrinkage. Scientific Reports 10, 18604.
  Abstract Citation Links
• Article
  D. Roy, D. Bernal, and M. Lees. An exploratory factor analysis model for slum severity index in Mexico City. Urban Studies 57(4), pp. 789-805.
  Abstract Citation Links
• Article
  P. S. Zun, A. J. Narracott, P. C. Evans, B. J. M. van Rooij, and A. G. Hoekstra. A particle-based model for endothelial cell migration under flow conditions. Biomechanics and Modeling in Mechanobiology 19(2), pp. 681-692.
  Abstract Citation Links
• Article
  G. Závodszky, B. Csippa, G. Paál, and I. Szikora. A novel virtual flow diverter implantation method with realistic deployment mechanics and validated force response. International Journal for Numerical Methods in Biomedical Engineering 36(6), e3340.
  Abstract Citation Links
• Article
  J. R. Helmus, M. H. Lees, and R. van den Hoed. A data driven typology of electric vehicle user types and charging sessions. Transportation Research. Part C, Emerging Technologies 115, 102637.
  Abstract Citation Links
• Proceedings
  B. Czaja, G. Závodszky, and A. Hoekstra. A Heterogeneous Multi-scale Model for Blood Flow. In: Computational Science – ICCS 2020. ISBN 9783030504335. VI, pp. 403-409.
  Abstract Citation Links
• Article
  S. V. Kovalchuk, V. V. Krzhizhanovskaya, and P. M. A. Sloot. 20 years of computational Science. Journal of Computational Science 46, 101187.
  Citation Links

2019

• Article
  S. Alowayyed, M. Vassaux, B. Czaja, P. V. Coveney, and A. G. Hoekstra. Towards heterogeneous multi-scale computing on large scale parallel supercomputers. Supercomputing Frontiers and Innovations 6(4), pp. 20-43.
  Abstract Citation Links
• Article
  V. Karbovskii, O. Severiukhina, I. Derevitskii, D. Voloshin, A. Presbitero, and M. Lees. The impact of different obstacles on crowd dynamics. Journal of Computational Science 36, 100893.
  Abstract Citation Links
• PhD Thesis
  V. Sheraton Muniraj. The emergence of biofilms. Supervised by P. M. A. Sloot.
  Abstract Citation
• Article
  I. Vermeulen, J. R. Helmus, M. Lees, and R. van den Hoed. Simulation of future electric vehicle charging behavior—effects of transition from PHEV to FEV. World Electric Vehicle Journal 10(2), 42.
  Abstract Citation Links
• Article
  V. Sivadasan, E. Lorenz, A. G. Hoekstra, and D. Bonn. Shear thickening of dense suspensions: The role of friction. Physics of Fluids 31(10), 103103.
  Abstract Citation Links
• Article
  A. Nikishova and A. G. Hoekstra. Semi-intrusive uncertainty propagation for multiscale models. Journal of Computational Science 35, pp. 80-90.
  Abstract Citation Links
• Article
  A. Nikishova, L. Veen, P. Zun, and A. G. Hoekstra. Semi-intrusive multiscale metamodelling uncertainty quantification with application to a model of in-stent restenosis. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 377(2142), 2018154.
  Abstract Citation Links
• Article
  S. V. Kovalchuk, V. V. Krzhizhanovskaya, Y. Shi, H. Fua, M. H. Lees, J. Dongarra, and P. M. A. Sloot. Science at the intersection of data, modelling, and computation. Journal of Computational Science 34, pp. 117-119.
  Citation Links
• Article
  I. Anagnostou and D. Kandhai. Risk Factor Evolution for Counterparty Credit Risk under a Hidden Markov Model. Risks 7(2), 66.
  Abstract Citation Links
• Article
  G. Závodszky, B. van Rooij, B. Czaja, V. Azizi, D. de Kanter, and A. G. Hoekstra. Red blood cell and platelet diffusivity and margination in the presence of cross-stream gradients in blood flows. Physics of Fluids 31(3), 031903.
  Abstract Citation Links
• Article
  M. V. Sheraton, V. R. Melnikov, and P. M. A. Sloot. Prediction and quantification of bacterial biofilm detachment using Glazier-Graner–Hogeweg method based model simulations. Journal of Theoretical Biology 482, 109994.
  Abstract Citation Links
• Article
  S. Alowayyed, T. Piontek, J. L. Suter, O. Hoenen, D. Groen, O. Luk, B. Bosak, P. Kopta, K. Kurowski, O. Perks, K. Brabazon, V. Jancauskas, D. Coster, P. V. Coveney, and A. G. Hoekstra. Patterns for High Performance Multiscale Computing. Future Generation Computer Systems 91, pp. 335-346.
  Abstract Citation Links
• Proceedings
  V. Azizi Tarksalooyeh, G. Závodszky, and A. G. Hoekstra. Optimizing Parallel Performance of the Cell Based Blood Flow Simulation Software HemoCell. In: Computational Science – ICCS 2019. ISBN 9783030227449. 3, pp. 537-547.
  Abstract Citation Links
• Article
  A. G. Hoekstra, S. Portegies Zwart, and P. V. Coveney. Multiscale modelling, simulation and computing: from the desktop to the exascale. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 377(2142), 20180355.
  Abstract Citation Links
• Article
  A. G. Hoekstra, B. Chopard, D. Coster, S. Portegies Zwart, and P. V. Coveney. Multiscale computing for science and engineering in the era of exascale performance. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 377(2142), 20180144.
  Abstract Citation Links
• Article
  P. Berg, S. Voß, G. Janiga, S. Saalfeld, A. W. Bergersen, K. Valen-Sendstad, J. Bruening, L. Goubergrits, A. Spuler, T. L. Chiu, A. C. O. Tsang, G. Copelli, B. Csippa, G. Paál, G. Závodszky, F. J. Detmer, B. J. Chung, J. R. Cebral, S. Fujimura, H. Takao, C. Karmonik, S. Elias, N. M. Cancelliere, M. Najafi, D. A. Steinman, V. M. Pereira, S. Piskin, E. A. Finol, M. Pravdivtseva, P. Velvaluri, H. Rajabzadeh-Oghaz, N. Paliwal, H. Meng, S. Seshadhri, S. Venguru, M. Shojima, S. Sindeev, S. Frolov, Y. Qian, Y.-A. Wu, K. D. Carlson, D. F. Kallmes, D. Dragomir-Daescu, and O. Beuing. Multiple Aneurysms AnaTomy CHallenge 2018 (MATCH)—phase II: rupture risk assessment. International Journal of Computer Assisted Radiology and Surgery 14(10), p. 1795–1804.
  Abstract Citation Links
• Article
  W. R. J. Vermeulen, D. Roy, and R. Quax. Modelling the Influence of Regional Identity on Human Migration. Urban Science 3(3), 78.
  Abstract Citation Links
• Article
  V. Prana, P. Tieri, M. C. Palumbo, E. Mancini, and F. Castiglione. Modeling the effect of high calorie diet on the interplay between adipose tissue, inflammation and diabetes. Computational and Mathematical Methods in Medicine 2019, 7525834.
  Abstract Citation Links
• Proceedings
  S. Shakeri, V. Maccatrozzo, L. Veen, R. Bakhshi, L. Gommans, C. de Laat, and P. Grosso. Modeling and matching digital data marketplace policies. In: IEEE 15th International Conference on eScience. ISBN 9781728124513. pp. 570-577.
  Abstract Citation Links
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