-
Article
N. Graf, A. Hoppe, E. Georgiadi, R. Belleman, C. Desmedt, D. Dionysiou, M. Erdt, J. Jacques, E. Kolokotroni, A. Lunzer, M. Tsiknakis, and G. Stamatakos.
‘In silico' oncology for clinical decision making in the context of nephroblastoma.
Klinische Pädiatrie
221(3), pp. 141-149.
-
Chapter
M. Bubak, M. Malawski, T. Gubala, M. Kasztelnik, P. Nowakowski, D. Harezlak, T. Bartynski, J. Kocot, E. Ciepiela, W. Funika, D. Krol, B. Balis, M. Assel, and A. Tirado-Ramos.
Virtual Laboratory for Collaborative Applications.
In: Handbook of research on computational grid technologies for life sciences, biomedicine, and healthcare.
ISBN 9781605663746.
pp. 531-551.
-
Article
R. J. Allison, S. P. Goodwin, R. J. Parker, S. F. Portegies Zwart, R. de Grijs, and M. B. N. Kouwenhoven.
Using the minimum spanning tree to trace mass segregation.
Monthly Notices of the Royal Astronomical Society
395(3), pp. 1449-1454.
-
Book
E. Zudilova-Seinstra, T. Adriaansen, and R. van Liere.
Trends in interactive visualization: State-of-the-art survey.
ISBN 9781848002685.
-
Proceedings
A. Caiazzo, D. Evans, J.-L. Falcone, J. Hegewald, E. Lorenz, B. Stahl, D. Wang, J. Bernsdorf, B. Chopard, J. Gunn, R. Hose, M. Krafczyk, P. Lawford, R. Smallwood, D. Walker, and A. G. Hoekstra.
Towards a Complex Automata multiscale model of in-stent restenosis.
In:
Computational Science – ICCS 2009.
ISBN
9783642019708.
I, pp. 705-714.
-
Proceedings
G. de Marchi, F. Paresce, and S. F. Portegies Zwart.
Time Evolution of the Stellar Mass Function of Galactic Clusters.
In: American Astronomical Society Meeting #213, #442.06 Abstracts.
American Astronomical Society Meeting Abstracts
41, p. 320.
-
Article
G. De Marchi, F. Paresce, and S. Portegies Zwart.
Time Evolution of the Stellar Mass Function of Galactic Clusters.
Bulletin - American Astronomical Society
41, p. 320.
-
Proceedings
J. Meizner, M. Malawski, S. Naqvi, and M. Bubak.
Threat model for MOCCA component environment.
In: Cracow'08 Grid Workshop: October 13-15, 2008 Cracow, Poland: proceedings.
ISBN 9788361433002.
pp. 94-102.
-
Proceedings
A. Tirado-Ramos and A. Shiflet.
Third Workshop on Teaching Computational Science (WTCS 2009).
In: Computational Science – ICCS 2009.
ISBN 9783642019739.
II, pp. 3-4.
-
Article
V. V. Korkhov, J. T. Moscicki, and V. V. Krzhizhanovskaya.
The user-level scheduling of divisible load parallel applications with resource selection and adaptive workload balancing on the Grid.
IEEE Systems Journal
3(1), pp. 121-130.
-
Article
S. F. Portegies Zwart.
The lost siblings of the Sun.
Astrophysical Journal Letters
696(1), pp. L13-L16.
-
Article
J. C. A. Miller-Jones, P. G. Jonker, G. Nelemans, S. Portegies Zwart, V. Dhawan, W. Brisken, E. Gallo, and M. P. Rupen.
The formation of the black hole in the X-ray binary system V404 Cyg.
Monthly Notices of the Royal Astronomical Society
394(3), pp. 1440-1448.
-
Article
E. Glebbeek, E. Gaburov, S. E. de Mink, O. R. Pols, and S. F. Portegies Zwart.
The evolution of runaway stellar collision products.
Astronomy & Astrophysics
497(1), pp. 255-264.
-
Report
G. S. Cook, R. G. Belleman, M. Scarpa, and C. T. A. M. de Laat.
The Cook Report on Internet Protocol on WiVR: a Window into Virtual Reality.
-
Report
G. S. Cook, R. G. Belleman, R. J. Strijkers, M. L. Cristea, R. J. Meijer, and C. T. A. M. de Laat.
The Cook Report on Internet Protocol on Interactive Networks (A User Interface for Appliction Owned Lightpath Networks).
-
Article
M. Ashyraliyev, Y. Fomekong-Nanfack, J. A. Kaandorp, and J. G. Blom.
Systems biology: parameter estimation for biochemical models.
The FEBS Journal
276(4), pp. 886-902.
-
Proceedings
J. Kitowski, M. Tura\la, K. Wiatr, M. T. Bubak, A. Kusznir, J. Niwicki, T. Szepieniec, M. Radecki, A. Ozieblo, Z. Mosurska, A. Szymańska, K. Krawentek, and et al..
Structure and status of National Grid Initiative in Poland.
In: Cracow'08 Grid Workshop: October 13-15, 2008 Cracow, Poland: proceedings.
ISBN 978-83-61433-00-2.
pp. 39-51.
-
PhD Thesis
-
Article
V. Krzhizhanovskaya.
Special section: Simulation of Multiphysics Multiscale Systems: Going Nano. Preface.
International Journal for Multiscale Computational Engineering
7(1), pp. vii-viii.
-
Article
L. Smarr, M. Brown, and C. de Laat.
Special section: OptIPlanet - The OptIPuter global collaboratory.
Future Generation Computer Systems
25(2), pp. 109-113.
-
Article
L. Axner, A. G. Hoekstra, A. Jeays, P. Lawford, R. Hose, and P. M. A. Sloot.
Simulations of time harmonic blood flow in the Mesenteric artery: comparing finite element and lattice Boltzmann methods.
BioMedical Engineering OnLine
8, p. 23.
-
Proceedings
V. V. Krzhizhanovskaya and V. V. Korkhov.
Simulation of plasma chemical processes on heterogeneous Grid resourses with adaptive load balancing for parallel solvers (Моделирование плазмохимических процессов на гетерогенных ресурсах Grid с адаптивной балансировкой нагрузки для параллельных солверов).
In:
Proceedings of the all-Russian supercomputer conference 'Scientific services on the Internet: Scalability, parallelism, efficiency'.
ISBN
9785211056978.
pp. 351-352.
-
Other: misc
V. V. Krzhizhanovskaya.
Simulation of Multiphysics Multiscale Systems: Going Nano.
International Journal for Multiscale Computational Engineering
7(1).
-
Other: misc
V. V. Krzhizhanovskaya.
Simulation of Multiphysics Multiscale Systems: Going Nano.
International Journal for Multiscale Computational Engineering, Special Section
7(1), pp. vii-viii.
-
Proceedings
V. V. Krzhizhanovskaya.
Simulation of Multiphysics Multiscale Systems, 6th International Workshop.
In:
Computational Science – ICCS 2009.
ISBN
9783642019708.
I, pp. 653-654.
-
Proceedings
R. Quax, D. A. Bader, and P. M. A. Sloot.
Simulating individual-based models of epidemics in hierarchical networks.
In:
Computational Science – ICCS 2009.
ISBN
9783642019708.
I, pp. 725-734.
-
Article
J. Cui, J. A. Kaandorp, O. O. Ositelu, V. Beaudry, A. Knight, Y. F. Nanfack, and K. W. Cunningham.
Simulating calcium influx and free calcium concentrations in yeast.
Cell Calcium
45(2), pp. 123-132.
-
Chapter
T. Gubala, M. Bubak, and P. M. A. Sloot.
Semantic Integration for Research Environments.
In:
Handbook of research on computational grid technologies for life sciences, biomedicine, and healthcare.
ISBN
9781605663746.
pp. 514-530.
-
Article
E. Gaburov, S. Harfst, and S. Portegies Zwart.
SAPPORO: A way to turn your graphics cards into a GRAPE-6.
New Astronomy
14(7), pp. 630-637.
-
Proceedings
P. Bar, C. Coti, D. Groen, T. Herault, V. Kravtsov, A Schuster, and M. Swain.
Running parallel applications with topology-aware grid middleware.
In: Proceedings of the 2009 Fifth IEEE International Conference on e-Science.
ISBN 9780769538778.
pp. 292-299.
-
Chapter
E. V. Zudilova-Seinstra, T. Adriaansen, and R. van Liere.
Overview of interactive visualization.
In: Trends in interactive visualization.
ISBN 9781848002685.
pp. 3-15.
-
Proceedings
D. Groen, S. Harfst, and S. Portegies Zwart.
On the origin of grid species: The living application.
In: Computational Science – ICCS 2009.
ISBN 9783642019708.
I, pp. 205-212.
-
PhD Thesis
S. S. Msanjila.
On inter-organizational trust engineering in networked collaborations: modeling and management of rational trust.
ISBN
978-90-5776-196-6.
Supervised by
P. M. A. Sloot and H. Afsarmanesh.
-
Proceedings
V. Krzhizhanovskaya.
Multi-model multi-scale simulation of complex plasma chemical processes.
In:
EUCASS Aerospace Thematic Workshop on Fundamentals of Aerodynamic-Flow and Combustion Control by Plasmas, Les Houches, France.
-
MSc Thesis
N. Zarrabi.
Modeling and Simulation of HIV-1 Intracellular Replication.
Supervised by
P. M. A. Sloot.
-
Proceedings
M. V. Baryshnikova and V. V. Krzhizhanovskaya.
Model development of a PECVD reactor for titanium dioxide film deposition [in Russian].
In:
International Conference "38th Science Week".
pp. 56-57.
-
Chapter
M. Postma and P. J. M. van Haastert.
Mathematics of experimentally generated chemoattractant gradients.
In: Chemotaxis: methods and protocols.
ISBN 9781607611974.
pp. 473-488.
-
PhD Thesis
J. Cui.
Mathematical modeling of metal ion homeostasis and signaling systems.
ISBN
9789088910883.
Supervised by
P. M. A. Sloot and J. A. Kaandorp.
-
Article
E. Lorenz, A. G. Hoekstra, and A. Caiazzo.
Lees-Edwards boundary conditions for lattice Boltzmann suspension simulations.
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics
79(3), p. 036706.
-
Article
D. I. Strokotov, M. A. Yurkin, K. V. Gilev, D. R. van Bockstaele, A. G. Hoekstra, N. B. Rubtsov, and V. P. Maltsev.
Is there a difference between T- and B-lymphocyte morphology?.
Journal of Biomedical Optics
14(6), p. 064036.
-
Proceedings
R. Strijkers, L. Muller, M. Cristea, R. Belleman, C. de Laat, P. Sloot, and R. Meijer.
Interactive control over a programmable computer network using a multi-touch surface.
In:
Computational Science – ICCS 2009.
ISBN
9783642019739.
II, pp. 719-728.
-
MSc Thesis
A. Z. \"Ozsoy.
Interactive Visualization of Large Medical Datasets on the Grid.
Supervised by
R. G. Belleman.
-
MSc Thesis
F. I. Rusadi.
Interactive Visualization of Graphs on Multiple Levels of Detail Using a Direct-Touch Interactive Graphics Device.
Supervised by
R. G. Belleman.
-
Proceedings
R. J. Strijkers, L. Y. L. Muller, M. L. Cristea, R. G. Belleman, C. T. A. M. de Laat, P. M. A. Sloot, and R. J. Meijer.
Interactive Control over a Programmable Computer Network Using a Multi-touch Surface.
In:
Computational Science - ICCS 2009: 9th International Conference, Baton Rouge, LA, USA, Proceedings, Part II.
ISBN
978-3-642-01972-2.
Lecture Notes in Computer Science
5545, pp. 719-728.
-
Proceedings
V. Krzhizhanovskaya and S. Ryaboshuk.
Information technologies and software packages for education of specialists in materials science [In Russian].
In:
Proceedings of the Third International Conference on Information Technologies in Education, Science and Industry (Serpuhov, Russia): Part I.
pp. 285-287.
-
Article
Y. Fomekong-Nanfack, M. Postma, and J. A. Kaandorp.
Inferring Drosophila gap gene regulatory network: Pattern analysis of simulated gene expression profiles and stability analysis.
BMC Research Notes
2, p. 256.
-
Article
Y. Fomekong-Nanfack, M. Postma, and J. A. Kaandorp.
Inferring Drosophila gap gene regulatory network: A parameter sensitivity and perturbation analysis.
BMC Systems Biology
3, p. 94.
-
Proceedings
A. Suinesiaputra, P. J. de Koning, E. V. Zudilova-Seinstra, J. H. C. Reiber, and R. J. van der Geest.
In vivo validations of 3D tubular NURBS fitting model applied on severe stenotic and high curvature MRA of carotid arteries.
In: ESMRMB Congress.
-
PhD Thesis
V. V. Korkhov.
Hierarchical resource management in grid computing.
ISBN
9789057761898.
Supervised by
P. M. A. Sloot and A. S. Z. Belloum.
-
Article
P. M. A. Sloot, P. V. Coveney, G. Ertaylan, V. Müller, C. A. Boucher, and M. Bubak.
HIV decision support: From molecule to man.
Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences
367(1898), pp. 2691-2703.
-
Article
A. Bossenbroek, A. Tirado-Ramos, and P. M. A. Sloot.
Grid resource allocation by means of option contracts.
IEEE Systems Journal
3(1), pp. 49-64.
-
PhD Thesis
F. Dijkstra.
Framework for path finding in multi-layer transport networks.
ISBN
978-90-814160-1-6.
Supervised by
P. M. A. Sloot and C. T. A. M. de Laat.
-
Article
M. B. N. Kouwenhoven, A. G. A. Brown, S. P. Goodwin, S. F. Portegies Zwart, and L. Kaper.
Exploring the consequences of pairing algorithms for binary stars.
Astronomy & Astrophysics
493(3), pp. 979-1016.
-
Proceedings
E. V. Zudilova-Seinstra, P. M. A. Sloot, P. J. H. de Koning, A. Suinesiaputra, R. J. van der Geest, and J. H. C. Reiber.
Exploring 2D/3D input techniques for medical image analysis.
In:
International Conference on Information Visualisation, track Biomedical Visualization (MediViz09), Barcelona, Spain.
ISBN
9780769537344.
pp. 147-152.
-
Proceedings
B. W. van Schooten, E. M. A. G. van Dijk, E. V. Zudilova-Seinstra, P. J. H. de Koning, and J. H. C. Reiber.
Evaluating visualisation and navigation techniques for interpretation of MRA data.
In: GRAPP 2009.
ISBN 9789898111678.
pp. 405-408.
-
Proceedings
B. W. van Schooten, E. M. A. G. van Dijk, E. V. Zudilova-Seinstra, P. J. H. de Koning, and J. H. C. Reiber.
Evaluating Visualization and Navigation Techniques for Interpretation of MRA Data.
In: International Conference on Computer Graphics Theory and Applications (GRAPP 2009).
pp. 405-408.
-
Proceedings
T. Bartyński, M. Bubak, T. Gubała, D. Harężlak, M. Kasztelnik, J. Kocot, and P. Nowakowski.
Environment for collaborative e-science applications: CGW08 tutorial.
In: Cracow'08 Grid Workshop: October 13-15, 2008 Cracow, Poland: proceedings.
ISBN 9788361433002.
pp. 58-60.
-
Proceedings
G. S. Shirshov and V. V. Krzhizhanovskaya.
Developing a model of processes in a shock tube with ignition of combustible gas mixtures [in Russian].
In:
International Conference "38th Science Week".
pp. 65-66.
-
Proceedings
V. A. Zverev, I. S. Kiseleva, and V. V. Krzhizhanovskaya.
Developing a model of nickel film growth in a PECVD reactor [in Russian].
In:
International Conference "38th Science Week".
pp. 59-60.
-
Article
P. M. A. Sloot.
Crisis computing: beslissingsondersteuning in een complexe wereld.
Magazine Nationale Veiligheid en Crisisbeheersing
7(8), pp. 62-63.
-
Book
M. Bubak, M. Turała, and K. Wiatr.
Cracow '08 Grid Workshop, October 13-15, 2008, Cracow, Poland: proceedings.
ISBN 9788361433002.
-
Article
E. Lorenz, A. Caiazzo, and A. G. Hoekstra.
Corrected momentum exchange method for lattice Boltzmann simulations of suspension flow.
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics
79(3), p. 036705.
-
Proceedings
D. A. Ivanov, I. Marinov, Y. E. Gorbachev, A. S. Smirnov, and V. V. Krzhizhanovskaya.
Computer Simulation of Laser Annealing of a Nanostructured Surface.
In:
Proceedings of the ASME IDETC/CIE-2009 conference.
ISBN
978-0-7918-3856-3.
pp. DETC2009-87087.
-
Article
S. Murtaza, A. G. Hoekstra, and P. M. A. Sloot.
Compute bound and I/O bound Cellular Automata simulations on FPGA logic.
ACM Transactions on Reconfigurable Technology and Systems
1(4), p. 23.
-
Book
G. Allen, J. Nabrzyski, E. Seidel, G. D. van Albada, J. Dongarra, and P. M. A. Sloot.
Computational Science – ICCS 2009.
ISBN
9783642019708, 9783642019739.
-
Chapter
J. Kroc and P. M. A. Sloot.
Complex systems modeling by cellular automata.
In:
Encyclopedia of artificial intelligence.
ISBN
9781599048499.
pp. 353-360.
-
Article
A. D. Verkerk, M. M. de Jong, J. K. Rath, M. Brinza, R. E. I. Schropp, W. J. Goedheer, V. V. Krzhizhanovskaya, Y. E. Gorbachev, K. E. Orlov, E. M. Khilkevitch, and A. S. Smirnov.
Compensation of decreased ion energy by increased hydrogen dilution in plasma deposition of thin film silicon solar cells at low substrate temperatures.
Materials Science and Engineering B-Advanced Functional Solid-State Materials
159-160, pp. 53-56.
-
Article
J. B. W. Geerdink and A. G. Hoekstra.
Comparing Entropic and Multiple Relaxation Times Lattice Boltzmann Methods for blood flow simulations.
International Journal of Modern Physics C
20(5), pp. 721-733.
-
Proceedings
V. Krzhizhanovskaya.
Challenges and solutions in simulation of plasma discharge in reactive flows.
In:
EUCASS Aerospace Thematic Workshop on Fundamentals of Aerodynamic-Flow and Combustion Control by Plasmas, Les Houches, France.
-
Article
J. Cui, J. A. Kaandorp, P. M. A. Sloot, C. M. Lloyd, and M. V. Filatov.
Calcium homeostasis and signaling in yeast cells and cardiac myocytes.
FEMS Yeast Research
9(8), pp. 1137-1147.
-
Proceedings
D. J. W. Evans, A. Caiazzo, J. L. Falcone, J. Hegewald, E. Lorenz, B. Stahl, D. Wang, J. Bernsdorf, B. Chopard, J. Gunn, D. Walker, R. Hose, M. Krafczyk, A. Hoekstra, and P. Lawford.
COAST: Modelling Restenosis and Stent Based Therapies.
In:
International Conference on Advancements of Medicine and Health Care through Technology.
ISBN
9783642042928.
pp. 319-322.