Publications of the CSL group2017
-
Article. Multiscale computing in the exascale era. Journal of Computational Science 22, pp. 15-25.
-
Article. Multiscale Modelling and Simulation, 14th International Workshop. Procedia Computer Science 108, pp. 1811-1812.
-
Chapter. More likely we would be ritually slaughtered. In: 43 Visions for Complexity. ISBN 9789813206854. pp. 65-66.
-
Article. Models of Pedestrian Adaptive Behaviour in Hot Outdoor Public Spaces. Procedia Computer Science 108, pp. 185-194.
-
Article. Modelling the impact of household life cycle on slums in Bangalore. Computers, Environment and Urban Systems 64, pp. 275-287.
-
Article. Modelling the distance impedance of protest attendance. Physica A : Statistical Mechanics and its Applications 468, pp. 171-182.
-
Book. International Conference on Computational Science, ICCS 2017.
-
Article. Hemocell: a high-performance microscopic cellular library. Procedia Computer Science 108, pp. 159-165.
-
Article. Erratum to. Behavior Research Methods 49(4), p. 1569.
-
Article. Efficient Estimation of Sensitivities for Counterparty Credit Risk with the Finite Difference Monte Carlo Method. Journal of Computational Finance 21(1), pp. 83-113.
-
Article. Design and evaluation of a data-driven scenario generation framework for game-based training. IEEE Transactions on Computational Intelligence and AI in Games 9(3), pp. 213-226.
-
Article. Data through the Computational Lens. Journal of Computational Science 20, pp. 81-84.
-
Article. Cellular Level In-silico Modeling of Blood Rheology with An Improved Material Model for Red Blood Cells. Frontiers in Physiology 8, 563.
-
Article. Automatic model construction for the behavior of human crowds. Applied Soft Computing 56, pp. 368-378.
-
Article. Anomaly detection in earth dam and levee passive seismic data using support vector machines and automatic feature selection. Journal of Computational Science 20, pp. 143-153.
-
Proceedings. Anomaly detection in earth dam and levee passive seismic data using multivariate Gaussian. In: ICMLA 2017 : 16th IEEE International Conference on Machine Learning and Applications. ISBN 9781538614174, 9781538614181. pp. 685-690.
-
Article. Anomaly Detection in Clinical Data of Patients Undergoing Heart Surgery. Procedia Computer Science 108, pp. 99-108.
-
Article. Analysis of Computational Science Papers from ICCS 2001-2016 using Topic Modeling and Graph Theory. Procedia Computer Science 108, pp. 7-17.
-
Article. A physical description of the adhesion and aggregation of platelets. Royal Society Open Science 4, 170219.
-
Article. A novel technique to combine and analyse spatial and temporal expression datasets: A case study with the sea anemone Nematostella vectensis to identify potential gene interactions. Developmental Biology 428(1), pp. 204-214.
-
Article. A cell-based mechanical model of coronary artery tunica media. Journal of the Royal Society Interface 14, 20170028.
-
Article. A Comparison of Fully-Coupled 3D In-Stent Restenosis Simulations to In-vivo Data. Frontiers in Physiology 8, 284.
2016
-
Article. Towards the virtual artery: a multiscale model for vascular physiology at the physics–chemistry–biology interface. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 374(2080), 20160146.
-
Article. The influence of memory on indoor environment exploration: A numerical study. Behavior Research Methods 48(2), pp. 621-639.
-
Proceedings. Techniques to integrate patient-specific simulation of aneurysmal blood flow into the clinical workflow. In: ECCOMAS Congress 2016 - Proceedings of the 7th European Congress on Computational Methods in Applied Sciences and Engineering. ISBN 9786188284401. pp. 147-154.
-
Chapter. Systems Biology and Health Systems Complexity. In: The Digital Patient. ISBN 9781118952788 . pp. 73-84.
-
PhD Thesis. Spatial gene expression quantification in changing morphologies. Supervised by P. M. A. Sloot and J. A. Kaandorp.
-
Article. Smile and Default: The Role of Stochastic Volatility and Interest Rates in Counterparty Credit Risk. Quantitative Finance 16(11), pp. 1725-1740.
-
Article. Simulating an Impact of Road Network Improvements on the Performance of Transportation Systems under Critical Load: Agent-based Approach. Procedia Computer Science 101, pp. 253-261.
-
Article. Scaling of shear-induced diffusion and clustering in a blood-like suspension. Europhysics Letters 114(1), 14002.
-
Proceedings. Reproducibility of Two Innate Immune System Models. In: Digital Transformation and Global Society. ISBN 9783319497006. pp. 501-514.
-
Proceedings. Preface. In: Digital Transformation and Global Society. ISBN 9783319497006. pp. V-VI.
-
Article. Partitioning of Arterial Tree for Parallel Decomposition of Hemodynamic Calculations. Procedia Computer Science 80, p. 977–987.
-
Article. Nonparametric estimation of Fisher information from real data. Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 93(2), 023301.
-
Article. Multiscale modelling and simulation, 13th international workshop. Procedia Computer Science 80, pp. 1242-1243.
-
Article. Luminescence and density banding patterns in massive Porites corals around the Thai-Malay Peninsula, Southeast Asia. Limnology and Oceanography 61(6), pp. 2003-2026.
-
Book. International Conference on Computational Science 2016, ICCS 2016.
-
Article. Information geometric analysis of phase transitions in complex patterns: the case of the Gray-Scott reaction-diffusion model. Journal of Statistical Mechanics : Theory and Experiment 2016(4), 043301.
-
Article. Immune System Model Calibration by Genetic Algorithm. Procedia Computer Science 101, pp. 161-171.
-
Chapter. From Molecules to Morphologies, a Multiscale Modeling Approach to Unravel the Complex System of Coral Calcification. In: The Cnidaria, Past, Present and Future. ISBN 9783319313054. pp. 223-236.
-
Article. From MDMA to Lady Gaga. Procedia Computer Science 101, pp. 96-106.
-
Article. Efficient computation of exposure profiles on real-world and risk-neutral scenarios for Bermudan swaptions. Journal of Computational Finance 20(1), pp. 139-172.
-
PhD Thesis. Efficient PDE based numerical estimation of credit and liquidity risk measures for realistic derivative portfolios. ISBN 978-94-028-0408-9. Supervised by P. M. A. Sloot and B. D. Kandhai.
-
Article. Development and simulation of microfluidic Wheatstone bridge for high-precision sensor. Journal of Physics: Conference Series 738, 012071.
-
PhD Thesis. Detecting and disrupting criminal networks. ISBN 978-90-77595-41-1. Supervised by A. G. Hoekstra and Z. J. M. H. Geradts.
-
Article. Data-driven Travel Demand Modelling and Agent-based Traffic Simulation in Amsterdam Urban Area. Procedia Computer Science 80, pp. 2030-2041.
-
Article. Data through the Computational Lens, Preface for ICCS 2016. Procedia Computer Science 80, pp. 1-7.
-
Article. Crack detection in earth dam and levee passive seismic data using support vector machines. Procedia Computer Science 80, pp. 577-586.
-
Article. Corrigendum to “The discrete dipole approximation: An overview and recent developments” [J. Quant. Spectrosc. Radiat. Transfer 106 (2007) 558–589]. Journal of Quantitative Spectroscopy & Radiative Transfer 171, pp. 82-83.
-
Article. Corrigendum to “Experience of using FEM for real-time flood early warning systems: Monitoring and modelling Boston levee instability”. Journal of Computational Science 16, pp. 225-226.
-
Article. Computer Simulation Approach in Development of Propane-air Combustor Microreactor. Procedia Computer Science 101, pp. 76-85.
-
PhD Thesis. Biosilicification mechanisms: An investigation using computational modeling and experimentation. ISBN 9789402801125. Supervised by P. M. A. Sloot and J. A. Kaandorp.
-
Chapter. Anatomy and Physiology of Multiscale Modeling and Simulation in Systems Medicine. In: Systems Medicine. ISBN 9781493932832. pp. 375-404.
-
Article. Abnormally high oscillator strengths of the graphene nanoribbons electronic spectrum. RSC Advances 6(79), pp. 75937-75942.
-
Article. A novel three-jet microreactor for localized metal-organic chemical vapour deposition of gallium arsenide. Journal of Physics: Conference Series 741, 012018.
-
Article. 3D simulation and analytical model of chemical heating during silicon wet etching in microchannels. Journal of Physics: Conference Series 681, 012035.
2015
-
Article. Young Researchers Advancing Computational Science: Perspectives of the Young Scientists Conference 2015. Procedia Computer Science 66, pp. 1-4.
-
PhD Thesis. Transport of blood cells studied with fully resolved models. ISBN 9789462597754. Supervised by P. M. A. Sloot and A. G. Hoekstra.
-
Article. Topological Characterization of Complex Systems: Using Persistent Entropy. Entropy 17(10), pp. 6872-6892.
-
Article. Simulating city-level airborne infectious diseases. Computers, Environment and Urban Systems 51, pp. 97-105.
-
Article. Scaling description of positive magnetoresistivity in doped dilute magnetic semiconductors. Journal of Magnetism and Magnetic Materials 383(1), pp. 44-49.
-
Article. SIM-CITY: An e-Science Framework for Urban Assisted Decision Support. Procedia Computer Science 51, pp. 2327-2336.
-
Article. Russian-Dutch double-degree Master’s programme in computational science in the age of global education. Journal of Computational Science 10, pp. 288-298.
-
Article. Perspectives of the International Conference of Computational Science 2014. Journal of Computational Science 10, pp. 247-248.
-
Article. Parallel performance of an IB-LBM suspension simulation framework. Journal of Computational Science 9, pp. 45-50.
-
Article. On the Possible Interaction Mechanism between Collateral Vessels and Restenosis. Procedia Computer Science 66, pp. 412-418.
-
Article. Numerical prediction of the IJkDijk trial embankment failure. Proceedings of the Institution of Civil Engineers. Geotechnical Engineering 168(2), pp. 158-171.
-
Article. Multiscale Modelling and Simulation Workshop: 12 Years of Inspiration. Procedia Computer Science 51, pp. 1082-1087.
-
Article. Modeling chemical vapor deposition of silicon dioxide in microreactors at atmospheric pressure. Journal of Physics: Conference Series 574, 012145.
-
Book. International Conference On Computational Science, ICCS 2015: Computational Science at the Gates of Nature.
-
Article. Information impact on transportation systems. Journal of Computational Science 9, pp. 88-93.
-
Article. How to Speed up Optimization? Opposite-Center Learning and Its Application to Differential Evolution. Procedia Computer Science 51, pp. 805-814.
-
Article. From Data to Disruption. Digital Investigation 11, pp. 39-45.
-
Article. Fluid Simulations with Atomistic Resolution: Multiscale Model with Account of Nonlocal Momentum Transfer. Procedia Computer Science 51, pp. 1108-1117.
-
Article. Experience of using FEM for real-time flood early warning systems: Monitoring and modeling Boston levee instability. Journal of Computational Science 10, pp. 13-25.
-
Article. Evolving agent-based models using self-adaptive complexification. Journal of Computational Science 10, pp. 351-359.
-
Article. Differential evolution for system identification of self-excited vibrations. Journal of Computational Science 10, pp. 360-369.
-
Proceedings. Detecting erosion events in earth dam and levee passive seismic data with clustering. In: 2015 IEEE 14th International Conference on Machine Learning and Applications. ISBN 9781509002870. pp. 903-910.
-
Article. Density-based evolutionary framework for crowd model calibration. Journal of Computational Science 6, pp. 11-22.
-
Article. Data-driven modeling of transportation systems and traffic data analysis during a major power outage in the Netherlands. Procedia Computer Science 66, pp. 336-345.
-
Article. Convergence of the discrete dipole approximation. I. Theoretical analysis: erratum. Journal of the Optical Society of America. A, Optics, Image Science and Vision 32(12), pp. 2407-2408.
-
Article. Computational Science at the Gates of Nature, preface for ICCS 2015. Procedia Computer Science 51, pp. 1-8.
-
Article. Complex agent networks: An emerging approach for modeling complex systems. Applied Soft Computing 37, pp. 311-321.
-
Article. Combining data-driven methods with finite element analysis for flood early warning systems. Procedia Computer Science 51, pp. 2347-2356.
-
Article. An in silico study on the role of smooth muscle cell migration in neointimal formation after coronary stenting. Journal of the Royal Society Interface 12(108), 20150358.
-
Proceedings. An Asynchronous Synchronization Strategy for Parallel Large-scale Agent-based Traffic Simulations. In: SIGSIM-PADS'15. ISBN 9781450335836, 9781450335652. pp. 259-269.
-
Article. A review of interactive narrative systems and technologies. Simulation 91(2), pp. 126-147.
-
Article. A partition-based match making algorithm for dynamic ridesharing. IEEE Transactions on Intelligent Transportation Systems 16(5), pp. 2587-2598.
-
Article. A mathematical model and simulation results of plasma enhanced chemical vapor deposition of silicon nitride films. Journal of Physics: Conference Series 574, 012144.
2014
-
Proceedings. Компьютерное моделирование и экспериментальные исследования закономерностей плазмохимического осаждения тонких пленок нитрида кремния. In: Неделя науки СПбГПУ : материалы Научно-практической конференции с международным участием, 2-7 декабря 2013 года. ISBN 9785742243472, 9785742243243. 2, pp. 31-33.
-
Article. Validation of an efficient two-dimensional model for dense suspensions of red blood cells. International Journal of Modern Physics C 25(12), 1441005.
-
Article. Understanding the Sub-Cellular Dynamics of Silicon Transportation and Synthesis in Diatoms Using Population-Level Data and Computational Optimization. PLoS Computational Biology 10(6), e1003687.
-
Article. Towards a data-driven approach to scenario generation for serious games. Computer Animation and Virtual Worlds 25(3-4), pp. 393-402.
-
Proceedings. Toward Simulation-Based Egress Optimization in Smart Buildings Using Symbiotic Simulation. In: Pedestrian and Evacuation Dynamics 2012. ISBN 9783319024462. pp. 987-999.
-
Article. Topology dependent epidemic spreading velocity in weighted networks. Journal of Statistical Mechanics : Theory and Experiment 2014(12), P12020.
-
Article. Time-frequency Methods for Structural Health Monitoring. Sensors 14(3), pp. 5147-5173.
-
MSc Thesis. The use of genetic algorithms to find an optimum MHD as an approximate description of holes. Supervised by S. Markoff and A. Boukhanovsky.
-
Article. The skeleton of the staghorn coral Acropora millepora: molecular and structural characterization. PLoS ONE 9(6), e97454.
-
Article. The emergence of slums: A contemporary view on simulation models. Environmental Modelling & Software 59, pp. 76-90.
-
Article. The Relative Ineffectiveness of Criminal Network Disruption. Scientific Reports 4, 4238.