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Proceedings
S. A. Konakov and V. V. Krzhizhanovskaya.
Компьютерное моделирование и экспериментальные исследования закономерностей плазмохимического осаждения тонких пленок нитрида кремния.
In:
Неделя науки СПбГПУ : материалы Научно-практической конференции с международным участием, 2-7 декабря 2013 года.
ISBN
9785742243472, 9785742243243.
2, pp. 31-33.
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Article
L. Mountrakis, E. Lorenz, and A. G. Hoekstra.
Validation of an efficient two-dimensional model for dense suspensions of red blood cells.
International Journal of Modern Physics C
25(12), 1441005.
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Article
N. Javaheri, R Dries, and J. Kaandorp.
Understanding the Sub-Cellular Dynamics of Silicon Transportation and Synthesis in Diatoms Using Population-Level Data and Computational Optimization.
PLoS Computational Biology
10(6), e1003687.
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Proceedings
H. Aydt, M. H. Lees, S. J. Turner, and W. Cai.
Toward Simulation-Based Egress Optimization in Smart Buildings Using Symbiotic Simulation.
In:
Pedestrian and Evacuation Dynamics 2012.
ISBN
9783319024462.
pp. 987-999.
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Article
W. Duan, R. Quax, M. Lees, X. Qiu, and P. M. A. Sloot.
Topology dependent epidemic spreading velocity in weighted networks.
Journal of Statistical Mechanics : Theory and Experiment
2014(12), P12020.
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Article
A. L. Pyayt, A. P. Kozionov, I. I. Mokhov, B. Lang, R. J. Meijer, V. V. Krzhizhanovskaya, and P. M. A. Sloot.
Time-frequency Methods for Structural Health Monitoring.
Sensors
14(3), pp. 5147-5173.
-
MSc Thesis
K. Mikhailov.
The use of genetic algorithms to find an optimum MHD as an approximate description of holes.
Supervised by S. Markoff and A. Boukhanovsky.
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Article
P. Ramos-Silva, J. Kaandorp, F. Herbst, L. Plasseraud, G. Alcaraz, C. Stern, M. Corneillat, N. Guichard, C. Durlet, G. Luquet, and F. Marin.
The skeleton of the staghorn coral Acropora millepora: molecular and structural characterization.
PLoS ONE
9(6), e97454.
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Article
D. Roy, M. H. Lees, B. Palavalli, K. Pfeffer, and P. M. A. Sloot.
The emergence of slums: A contemporary view on simulation models.
Environmental Modelling & Software
59, pp. 76-90.
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Article
P. A. C. Duijn, V. Kashirin, and P. M. A. Sloot.
The Relative Ineffectiveness of Criminal Network Disruption.
Scientific Reports
4, 4238.
-
Article
V. Savickas, N. Hari, T. Wood, and D. Kandhai.
Super Fast Greeks: An Application to Counterparty Valuation Adjustments.
Wilmott
69, pp. 76-80.
-
MSc Thesis
A. Klimkina.
Study of the news spread among social network user with respect to their stakeholdership.
Supervised by
R. Quax and A. Yakushev.
-
Report
-
Proceedings
-
Article
A. L. Pyayt, A. P. Kozionov, V. T. Kusherbaeva, I. I. Mokhov, V. V. Krzhizhanovskaya, B. J. Broekhuijsen, R. J. Meijer, and P. M. A. Sloot.
Signal analysis and anomaly detection for flood early warning systems.
Journal of Hydroinformatics
16(5), pp. 1025-1043.
-
Article
S. A. Cheong, T. L. Tan, C.-C. Chen, W.-L. Chang, Z. Liu, L. Y. Chew, P. M. A. Sloot, and N. F. Johnson.
Short-Term Forecasting of Taiwanese Earthquakes Using a Universal Model of Fusion-Fission Processes.
Scientific Reports
4, 3624.
-
Article
C. D. Erdbrink, V. V. Krzhizhanovskaya, and P. M. A. Sloot.
Reducing cross-flow vibrations of underflow gates: experiments and numerical studies.
Journal of Fluids and Structures
50, pp. 25-48.
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Article
V. Viswanathan, C. E. Lee, M. H. Lees, S. A. Cheong, and P. M. A. Sloot.
Quantitative Comparison Between Crowd Models for Evacuation Planning and Evaluation.
The European Physical Journal B. Condensed Matter Physics
87(2), 27.
-
Proceedings
-
Article
J. Borgdorff, M. Ben Belgacem, C. Bona-Casas, L. Fazendeiro, D. Groen, O. Hoenen, A. Mizeranschi, J. L. Sutter, D. Coster, P. V. Coveney, W. Dubitzky, A. G. Hoekstra, P. Strand, and B. Chopard.
Performance of distributed multiscale simulations.
Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences
372(2021), 20130407.
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Article
S. Karabasov, D. Nerukh, A. Hoekstra, B. Chopard, and P. V. Coveney.
Multiscale modelling: approaches and challenges.
Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences
372(2021), 20130390.
-
Article
A. Hoekstra, B. Chopard, and P. Coveney.
Multiscale modelling and simulation: a position paper.
Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences
372(2021), 20130377.
-
MSc Thesis
A. Chirkin.
Multi-objective optimization approach to infer Drosophila gene regulatory parameters.
Supervised by A. S. Z. Belloum and S. Kovalchuk.
-
Chapter
A. Hoekstra, B. Chopard, and P. Lawford.
Multi-Scale Modelling and Simulation.
In:
Computational biomedicine: modelling the human body.
ISBN
9780199658183.
pp. 138-160.
-
PhD Thesis
-
Article
L. J. Dijkstra, A. V. Yakushev, P. A. C. Duijn, A. V. Boukhanovsky, and P. M. A. Sloot.
Inference of the Russian drug community from one of the largest social networks in the Russian Federation.
Quality and Quantity
48(5), pp. 2739-2755.
-
Article
S. Mei, Y. Zhu, X. Qiu, X. Zhou, Z. Zu, A. V. Boukhanovsky, and P. M. A. Sloot.
Individual decision making can drive epidemics: a fuzzy cognitive map study.
IEEE Transactions on Fuzzy Systems
22(2), pp. 264-273.
-
Article
C. D. Erdbrink and V. V. Krzhizhanovskaya.
Identifying Self-excited Vibrations with Evolutionary Computing.
Procedia Computer Science
29, pp. 637-647.
-
Article
C. M. Amatruda, C. Bona Casas, B. K. Keller, H. Tahir, G. Dubini, A. Hoekstra, D. R. Hose, P. Lawford, F. Migliavacca, A. J. Narracott, and J. Gunn.
From histology and imaging data to models for in-stent restenosis.
The international journal of artificial organs
37(10), pp. 786-800.
-
Article
C. D. Erdbrink, V. V. Krzhizhanovskaya, and P. M. A. Sloot.
Free-surface flow simulations for discharge-based operation of hydraulic structure gates.
Journal of Hydroinformatics
16(1), pp. 189-206.
-
PhD Thesis
-
Article
N. B. Melnikova, D. Jordan, V. V. Krzhizhanovskaya, and P. M. A. Sloot.
Experimental Collapse of the IJkDijk: Numerical Prediction of Failure Mode and Posterior Sensor Data Analysis.
Canadian Geotechnical Journal
.
-
Article
M. Wagner, W. Cai, M. H. Lees, and H. Aydt.
Evolving Agent-based Models Using Complexification Approach.
Procedia Computer Science
29, pp. 310-321.
-
Article
Flávio L. Pinheiro, Vítor V. Vasconcelos, Francisco C. Santos, and Jorge M. Pacheco.
Evolution of All-or-None Strategies in Repeated Public Goods Dilemmas.
PLoS Computational Biology
10(11).
-
Article
J. O. Oelerich, F. Jansson, A. V. Nenashev, F. Gebhard, and S. D. Baranovskii.
Energy position of the transport path in disordered organic semiconductors.
Journal of Physics-Condensed Matter
26(25), 255801.
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Article
H. Tahir, C. Bona-Casas, A. J. Narracott, J. Iqbal, J. Gunn, P. Lawford, and A. G. Hoekstra.
Endothelial repair process and its relevance to longitudinal neointimal tissue patterns: Comparing histology with in silico modelling.
Journal of the Royal Society Interface
11(94), 20140022.
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Proceedings
Y. Xu, W. Cai, H. Aydt, and M. Lees.
Efficient graph-based dynamic load-balancing for parallel large-scale agent-based traffic simulation.
In:
Proceedings of the 2014 Winter Simulation Conference: exploring big data through simulation: December 7-10, 2014, Westin Savannah Harbor Resort, Savannah, GA.
ISBN
9781479974849.
pp. 3483-3494.
-
Article
C. S. L. de Graaf, Q. Feng, D. Kandhai, and C. W. Oosterlee.
Efficient Computation of Exposure Profiles for Counterparty Credit Risk.
International Journal of Theoretical and Applied Finance
17(4), 1450024.
-
Proceedings
J. Zhong, W. Cai, L. Luo, and M. Lees.
EA-based evacuation planning using agent-based crowd simulation.
In:
Proceedings of the 2014 Winter Simulation Conference: exploring big data through simulation: December 7-10, 2014, Westin Savannah Harbor Resort, Savannah, GA.
ISBN
9781479974849.
pp. 395-406.
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Proceedings
A. Bilyatdinova, A. Dukhanov, K. Bochenina, A. V. Boukhanovsky, V. V. Krzhizhanovskaya, and P. M. A. Sloot.
Dutch-Russian Double Degree Master's Program Curricula in Computational Science and High Performance Computing.
In:
2014 IEEE Frontiers in Education Conference.
ISBN
9781479939213, 9781479939220.
-
Article
A. V. Dukhanov, V. V. Krzhizhanovskaya, A. Bilyatdinova, A. V. Boukhanovsky, and P. M. A. Sloot.
Double-degree Master's Program in Computational Science: Experiences of ITMO University and University of Amsterdam.
Procedia Computer Science
29, pp. 1433-1445.
-
Article
J. Borgdorff, M. Mamonski, B. Bosak, K. Kurowski, M. Ben Belgacem, B. Chopard, D. Groen, P. V. Coveney, and A. G. Hoekstra.
Distributed multiscale computing with MUSCLE 2, the Multiscale Coupling Library and Environment.
Journal of Computational Science
5(5), pp. 719-731.
-
PhD Thesis
-
PhD Thesis
-
Article
Vítor V. Vasconcelos, Francisco C. Santos, Jorge M. Pacheco, and Simon A. Levin.
Climate policies under wealth inequality.
Proceedings of the National Academy of Sciences of the United States of America
111(6), pp. 2212-2216.
-
Article
-
Proceedings
J. Zhong, L. Luo, W. Cai, and M. Lees.
Automatic Rule Identification for Agent-Based Crowd Models Through Gene Expression Programming.
In:
AAMAS '14: proceedings of the 2014 International Conference on Autonomous Agents & Multiagent Systems.
ISBN
9781450327381.
pp. 1125-1132.
-
Article
T. I. Jung, F. Vogiatzian, O. Har-Shemesh, C. P. Fitzsimons, and R. Quax.
Applying Information Theory to Neuronal Networks: From Theory to Experiments.
Entropy
16(11), pp. 5721-5737.
-
Article
Y. H. A. Teo, V. Viswanathan, M. Lees, and W. Cai.
Analysing the Effectiveness of Wearable Wireless Sensors in Controlling Crowd Disasters.
Procedia Computer Science
29, pp. 1590-1599.
-
PhD Thesis
E. Mancini.
Agent based modeling of viral infections: an investigation across several spatio-temporal scales.
Supervised by
P. M. A. Sloot.
-
Article
Q. C. Bui, P. M. A. Sloot, E. M. van Mulligen, and J. A. Kors.
A novel feature-based approach to extract drug-drug interactions from biomedical text.
Bioinformatics
30(23), pp. 3365-3371.
-
Article
C. Tamulonis and J. Kaandorp.
A model of filamentous cyanobacteria leading to reticulate pattern formation.
Life (Basel)
4(3), pp. 433-456.
-
Article
B. Chopard, J. Borgdorff, and A. G. Hoekstra.
A framework for multi-scale modelling.
Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences
372(2021), 2013037813.
-
Article
D. Botman, E. Röttinger, M. Q. Martindale, J. de Jong, and J. A. Kaandorp.
A computational approach towards a gene regulatory network for the developing Nematostella vectensis gut.
PLoS ONE
9(7), e103341.
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Book