2018
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ArticleModelling Neutrophils' Response to Various Levels of Insults. Procedia Computer Science pp. 390-397..
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ArticleMesoscopic Energy Minimization Drives Pseudomonas aeruginosa Biofilm Morphologies and Consequent Stratification of Antibiotic Activity Based on Cell Metabolism. Antimicrobial Agents and Chemotherapy ..
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ArticleLoad balancing of parallel cell-based blood flow simulations. Journal of Computational Science pp. 1-7..
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ArticleLiquidity risk in derivatives valuation: an improved credit proxy method. Quantitative Finance pp. 467-481..
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ReportIvI Education vision..
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ArticleInformation processing features can detect behavioral regimes of dynamical systems. Complexity ..
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ArticleInflow and outflow boundary conditions for 2D suspension simulations with the immersed boundary lattice Boltzmann method. Computers & fluids p. 312–317..
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ArticleIncorporating Contagion in Portfolio Credit Risk Models Using Network Theory. Complexity ..
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ArticleHigh-throughput method for extracting and visualizing the spatial gene expressions from in situ hybridization images: A case study of the early development of the sea anemone Nematostella vectensis. Gene expression patterns : GEP pp. 36-45..
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ArticleFinancial statement networks: an application of network theory in audit. The Journal of Network Theory in Finance pp. 59-85..
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ProceedingsEvolutionary Game Theory Can Explain the Choice Between Apoptotic and Necrotic Pathways in Neutrophils. In: Proceedings 2018 IEEE International Conference on Bioinformatics and Biomedicine. pp. 1401-1405..
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ArticleEpigenome-associated phenotypic acclimatization to ocean acidification in a reef-building coral. Sciences advances ..
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ArticleDirected nucleation and growth by balancing local supersaturation and substrate/nucleus lattice mismatch. Proceedings of the National Academy of Sciences of the United States of America pp. 3575-3580..
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ArticleCoupling Game Theory and Discrete-Event Simulation for Model-Based Ambulance Dispatching. Procedia Computer Science pp. 398-407..
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ArticleCombined Lattice–Boltzmann and rigid-body method for simulations of shear-thickening dense suspensions of hard particles. Computers & fluids pp. 474-482..
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ArticleCell-resolved blood flow simulations of saccular aneurysms: effects of pulsatility and aspect ratio. Journal of the Royal Society Interface ..
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ArticleCategorical and Geographical Separation in Science. Scientific Reports ..
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ArticleApplication of clustering methods for detecting critical acute coronary syndrome patients. Procedia Computer Science pp. 370-379..
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ArticleAnalysis of publication activity of computational science society in 2001–2017 using topic modelling and graph theory. Journal of Computational Science pp. 193-204..
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ArticleA study on the dynamics of temporary HIV treatment to assess the controversial outcomes of clinical trials: An in-silico approach. PLoS ONE ..
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ArticleA new hypothesis on the role of vessel topology in cerebral aneurysm initiation. Computers in Biology and Medicine pp. 244-251..
2017
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ArticleeHealth in the future of medications management: personalisation, monitoring and adherence. BMC Medicine ..
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ArticleUncertainty quantification and sensitivity analysis applied to the wind wave model SWAN. Environmental Modelling & Software pp. 344-357..
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ArticleThe study of the influence of obstacles on crowd dynamics. Procedia Computer Science pp. 215-224..
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ArticleThe effect of allometric scaling in coral thermal microenvironments. PLoS ONE ..
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ArticleThe Art of Computational Science, Bridging Gaps - Forming Alloys. Procedia Computer Science pp. 1-2..
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ArticleScatter Search Applied to the Inference of a Development Gene Network. Computation ..
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ArticleRevisiting the use of the immersed-boundary lattice-Boltzmann method for simulations of suspended particles. Physical Review E - Statistical, Nonlinear, and Soft Matter Physics ..
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ArticleRelaxing Synchronization in Parallel Agent-Based Road Traffic Simulation. ACM Transactions on Modeling and Computer Simulation ..
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ArticleQuantitative morphological analysis of 2D images of complex-shaped branching biological growth forms: the example of branching thalli of liverworts. BMC Research Notes ..
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ArticleQuantifying Synergistic Information Using Intermediate Stochastic Variables. Entropy ..
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ArticleNovel approach to investigation of semiconductor MOCVD by microreactor technology. Journal of Physics. Conference Series ..
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ArticleMultiscale computing in the exascale era. Journal of Computational Science pp. 15-25..
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ArticleMultiscale Modelling and Simulation, 14th International Workshop. Procedia Computer Science pp. 1811-1812..
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ChapterMore likely we would be ritually slaughtered. In: 43 Visions for Complexity. pp. 65-66..
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ArticleModels of Pedestrian Adaptive Behaviour in Hot Outdoor Public Spaces. Procedia Computer Science pp. 185-194..
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ArticleModelling the impact of household life cycle on slums in Bangalore. Computers, Environment and Urban Systems pp. 275-287..
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ArticleModelling the distance impedance of protest attendance. Physica A : Statistical Mechanics and its Applications pp. 171-182..
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ArticleHemocell: a high-performance microscopic cellular library. Procedia Computer Science pp. 159-165..
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ArticleEfficient Estimation of Sensitivities for Counterparty Credit Risk with the Finite Difference Monte Carlo Method. Journal of Computational Finance pp. 83-113..
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ArticleDesign and evaluation of a data-driven scenario generation framework for game-based training. IEEE Transactions on Computational Intelligence and AI in Games pp. 213-226..
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ArticleData through the Computational Lens. Journal of Computational Science pp. 81-84..
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ArticleCellular Level In-silico Modeling of Blood Rheology with An Improved Material Model for Red Blood Cells. Frontiers in Physiology ..
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ArticleAutomatic model construction for the behavior of human crowds. Applied Soft Computing pp. 368-378..
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ArticleAnomaly detection in earth dam and levee passive seismic data using support vector machines and automatic feature selection. Journal of Computational Science pp. 143-153..
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ProceedingsAnomaly detection in earth dam and levee passive seismic data using multivariate Gaussian. In: ICMLA 2017 : 16th IEEE International Conference on Machine Learning and Applications. pp. 685-690..
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ArticleAnomaly Detection in Clinical Data of Patients Undergoing Heart Surgery. Procedia Computer Science pp. 99-108..
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ArticleAnalysis of Computational Science Papers from ICCS 2001-2016 using Topic Modeling and Graph Theory. Procedia Computer Science pp. 7-17..
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ArticleA physical description of the adhesion and aggregation of platelets. Royal Society Open Science ..
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ArticleA novel technique to combine and analyse spatial and temporal expression datasets: A case study with the sea anemone Nematostella vectensis to identify potential gene interactions. Developmental Biology pp. 204-214..
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ArticleA cell-based mechanical model of coronary artery tunica media. Journal of the Royal Society Interface ..
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ArticleA Comparison of Fully-Coupled 3D In-Stent Restenosis Simulations to In-vivo Data. Frontiers in Physiology ..
2016
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ArticleTowards the virtual artery: a multiscale model for vascular physiology at the physics–chemistry–biology interface. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences ..
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ArticleThe influence of memory on indoor environment exploration: A numerical study. Behavior Research Methods pp. 621-639..
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ChapterSystems Biology and Health Systems Complexity. In: The Digital Patient. pp. 73-84..
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ArticleSmile and Default: The Role of Stochastic Volatility and Interest Rates in Counterparty Credit Risk. Quantitative Finance pp. 1725-1740..
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ArticleSimulating an Impact of Road Network Improvements on the Performance of Transportation Systems under Critical Load: Agent-based Approach. Procedia Computer Science pp. 253-261..
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ArticleScaling of shear-induced diffusion and clustering in a blood-like suspension. Europhysics Letters ..
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ProceedingsReproducibility of Two Innate Immune System Models. In: Digital Transformation and Global Society. pp. 501-514..
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ArticlePartitioning of Arterial Tree for Parallel Decomposition of Hemodynamic Calculations. Procedia Computer Science p. 977–987..
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ArticleNonparametric estimation of Fisher information from real data. Physical Review E - Statistical, Nonlinear, and Soft Matter Physics ..
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ArticleMultiscale modelling and simulation, 13th international workshop. Procedia Computer Science pp. 1242-1243..
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ArticleLuminescence and density banding patterns in massive Porites corals around the Thai-Malay Peninsula, Southeast Asia. Limnology and Oceanography pp. 2003-2026..
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ArticleInformation geometric analysis of phase transitions in complex patterns: the case of the Gray-Scott reaction-diffusion model. Journal of Statistical Mechanics : Theory and Experiment ..
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ArticleImmune System Model Calibration by Genetic Algorithm. Procedia Computer Science pp. 161-171..
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ChapterFrom Molecules to Morphologies, a Multiscale Modeling Approach to Unravel the Complex System of Coral Calcification. In: The Cnidaria, Past, Present and Future. pp. 223-236..
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ArticleFrom MDMA to Lady Gaga. Procedia Computer Science pp. 96-106..
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ArticleEfficient computation of exposure profiles on real-world and risk-neutral scenarios for Bermudan swaptions. Journal of Computational Finance 20(1), pp. 139-172..
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ArticleDevelopment and simulation of microfluidic Wheatstone bridge for high-precision sensor. Journal of Physics. Conference Series ..
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ArticleData-driven Travel Demand Modelling and Agent-based Traffic Simulation in Amsterdam Urban Area. Procedia Computer Science pp. 2030-2041..
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ArticleData through the Computational Lens, Preface for ICCS 2016. Procedia Computer Science pp. 1-7..
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ArticleCrack detection in earth dam and levee passive seismic data using support vector machines. Procedia Computer Science pp. 577-586..
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ArticleComputer Simulation Approach in Development of Propane-air Combustor Microreactor. Procedia Computer Science pp. 76-85..
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ChapterAnatomy and Physiology of Multiscale Modeling and Simulation in Systems Medicine. In: Systems Medicine. pp. 375-404..
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ArticleAbnormally high oscillator strengths of the graphene nanoribbons electronic spectrum. RSC Advances pp. 75937-75942..
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ArticleA novel three-jet microreactor for localized metal-organic chemical vapour deposition of gallium arsenide. Journal of Physics. Conference Series ..
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Article3D simulation and analytical model of chemical heating during silicon wet etching in microchannels. Journal of Physics. Conference Series ..
2015
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ArticleYoung Researchers Advancing Computational Science: Perspectives of the Young Scientists Conference 2015. Procedia Computer Science pp. 1-4..
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ArticleTopological Characterization of Complex Systems: Using Persistent Entropy. Entropy pp. 6872-6892..
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ArticleSimulating city-level airborne infectious diseases. Computers, Environment and Urban Systems pp. 97-105..
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ArticleScaling description of positive magnetoresistivity in doped dilute magnetic semiconductors. Journal of Magnetism and Magnetic Materials pp. 44-49..
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ArticleSIM-CITY: An e-Science Framework for Urban Assisted Decision Support. Procedia Computer Science pp. 2327-2336..
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ArticleRussian-Dutch double-degree Master’s programme in computational science in the age of global education. Journal of Computational Science pp. 288-298..
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ArticlePerspectives of the International Conference of Computational Science 2014. Journal of Computational Science pp. 247-248..
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ArticleParallel performance of an IB-LBM suspension simulation framework. Journal of Computational Science pp. 45-50..
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ArticleOn the Possible Interaction Mechanism between Collateral Vessels and Restenosis. Procedia Computer Science pp. 412-418..
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ArticleNumerical prediction of the IJkDijk trial embankment failure. Proceedings of the Institution of Civil Engineers. Geotechnical Engineering pp. 158-171..
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ArticleMultiscale Modelling and Simulation Workshop: 12 Years of Inspiration. Procedia Computer Science pp. 1082-1087..
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ArticleModeling chemical vapor deposition of silicon dioxide in microreactors at atmospheric pressure. Journal of Physics. Conference Series ..
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ArticleInformation impact on transportation systems. Journal of Computational Science pp. 88-93..
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ArticleHow to Speed up Optimization? Opposite-Center Learning and Its Application to Differential Evolution. Procedia Computer Science pp. 805-814..
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ArticleFrom Data to Disruption. Digital Investigation pp. 39-45..
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ArticleFluid Simulations with Atomistic Resolution: Multiscale Model with Account of Nonlocal Momentum Transfer. Procedia Computer Science pp. 1108-1117..
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ArticleExperience of using FEM for real-time flood early warning systems: Monitoring and modeling Boston levee instability. Journal of Computational Science pp. 13-25..
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ArticleEvolving agent-based models using self-adaptive complexification. Journal of Computational Science pp. 351-359..
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ArticleDifferential evolution for system identification of self-excited vibrations. Journal of Computational Science pp. 360-369..
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ProceedingsDetecting erosion events in earth dam and levee passive seismic data with clustering. In: 2015 IEEE 14th International Conference on Machine Learning and Applications. pp. 903-910..
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ArticleDensity-based evolutionary framework for crowd model calibration. Journal of Computational Science pp. 11-22..
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ArticleData-driven modeling of transportation systems and traffic data analysis during a major power outage in the Netherlands. Procedia Computer Science pp. 336-345..
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ArticleComputational Science at the Gates of Nature, preface for ICCS 2015. Procedia Computer Science pp. 1-8..