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2023

• Article
  A. O. Rydin, Y. Milaneschi, R. Quax, J. Li, J. A. Bosch, R. A. Schoevers, E. J. Giltay, B. W. J. H. Penninx, and F. Lamers. A network analysis of depressive symptoms and metabolomics. Psychological Medicine .
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• Article
  J. F. Uleman, R. J. F. Melis, E. Ntanasi, N. Scarmeas, A. G. Hoekstra, R. Quax, and M. G. M. Olde Rikkert. Simulating the multicausality of Alzheimer's disease with system dynamics. Alzheimer's & Dementia 19(6), pp. 2633-2654.
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• Article
  C. Hourican, G. Peeters, R. J. F. Melis, S. L. Wezeman, T. M. Gill, M. G. M. Olde Rikkert, and R. Quax. Understanding multimorbidity requires sign-disease networks and higher-order interactions, a perspective. Frontiers in Systems Biology 3, 1155599.
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2022

• Article
  C. van Elteren, R. Quax, and P. Sloot. Dynamic importance of network nodes is poorly predicted by static structural features. Physica A : Statistical Mechanics and its Applications 593, 126889.
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• Article
  K. den Nijs, J. Edivaldo, B. D. L. Châtel, J. F. Uleman, M. Olde Rikkert, H. Wertheim, and R. Quax. A Global Sharing Mechanism of Resources. International Journal of Environmental Research and Public Health 19(10), 5930.
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• Article
  N. Merabet, P. J. Lucassen, L. Crielaard, K. Stronks, R. Quax, P. M. A. Sloot, S. E. la Fleur, and M. Nicolaou. How exposure to chronic stress contributes to the development of type 2 diabetes. Frontiers in Neuroendocrinology 65, 100972.
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• Article
  L. Lang, Pierre Baudot, R. Quax, and P. D. Forré. Information Decomposition Diagrams Applied beyond Shannon Entropy: A Generalization of Hu's Theorem.
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2021

• Article
  J. Bruggeman, R. Sprik, and R. Quax. Spontaneous cooperation for public goods. Journal of Mathematical Sociology 45(3), pp. 183-191.
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• Article
  J. F. Uleman, R. J. F. Melis, R. Quax, E. A. van der Zee, D. Thijssen, M. Dresler, O. van de Rest, I. F. van der Velpen, H. H. H. Adams, B. Schmand, I. M. C. M. de Kok, J. de Bresser, E. Richard, M. Verbeek, A. G. Hoekstra, E. A. J. A. Rouwette, and M. G. M. Olde Rikkert. Mapping the multicausality of Alzheimer’s disease through group model building. GeroScience 43(2), p. 829–843.
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• Article
  E. Weinans, R. Quax, E. H. van Nes, and I. A. van de Leemput. Evaluating the performance of multivariate indicators of resilience loss. Scientific Reports 11, 9148.
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• Article
  L. Crielaard, M. Nicolaou, A. Sawyer, R. Quax, and K. Stronks. Understanding the impact of exposure to adverse socioeconomic conditions on chronic stress from a complexity science perspective. BMC Medicine 19, 242.
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• Article
  P. Dutta, R. Quax, L. Crielaard, L. Badiali, and P. M. A. Sloot. Inferring temporal dynamics from cross-sectional data using Langevin dynamics. Royal Society Open Science 8(11), 211374.
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• Article
  J. F. Uleman, R. Quax, R. J. F. Melis, A. Hoekstra, and M. G. M. Olde Rikkert. An individualized systems model to optimize Alzheimer’s disease prevention strategies. Alzheimer's & Dementia 17(S10), e050885.
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2020

• Article
  J. J. Lever, I. A. van de Leemput, E. Weinans, R. Quax, V. Dakos, E. H. van Nes, J. Bascompte, and M. Scheffer. Foreseeing the future of mutualistic communities beyond collapse. Ecology Letters 23(1), pp. 2-15.
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• Article
  J. Burger, D. C. van der Veen, D. J. Robinaugh, R. Quax, H. Riese, R. A. Schoevers, and S. Epskamp. Bridging the gap between complexity science and clinical practice by formalizing idiographic theories: a computational model of functional analysis. BMC Medicine 18, 99.
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• Article
  L. Crielaard, P. Dutta, R. Quax, M. Nicolaou, N. Merabet, K. Stronks, and P. M. A. Sloot. Social norms and obesity prevalence: From cohort to system dynamics models. Obesity Reviews 21(9), e13044.
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• Article
  O. Har-Shemesh, R. Quax, J. S. Lansing, and P. M. A. Sloot. Questionnaire data analysis using information geometry. Scientific Reports 10, 8633.
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• Proceedings
  B. Nannes, R. Quax, H. Ashikaga, M. Hocini, R. Dubois, O. Bernus, and M. Haïssaguerre. Early signs of critical slowing down in heart surface electrograms of ventricular fibrillation victims. In: Computational Science – ICCS 2020. ISBN 9783030504236. IV, pp. 334-347.
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• Proceedings
  A. Presbitero, R. Quax, V. V. Krzhizhanovskaya, and P. M. A. Sloot. Detecting critical transitions in the human innate immune system post-cardiac surgery. In: Computational Science – ICCS 2020. ISBN 9783030503710. I, pp. 371-384.
  Abstract Citation Links
• Article
  J. Uleman, R. J. F. Melis, A. Hoekstra, R. Quax, and M. G. M. Olde Rikkert. Uncovering the multicausality of Alzheimer’s disease: A systems modeling approach. Alzheimer's & Dementia 16(S10), e041105.
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2019

• Article
  W. R. J. Vermeulen, D. Roy, and R. Quax. Modelling the Influence of Regional Identity on Human Migration. Urban Science 3(3), 78.
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• Article
  J. Runge, S. Bathiany, E. Bollt, G. Camps-Valls, D. Coumou, E. Deyle, C. Glymour, M. Kretschmer, M. D. Mahecha, J. Muñoz-Marí, E. H. van Nes, J. Peters, R. Quax, M. Reichstein, M. Scheffer, B. Schölkopf, P. Spirtes, G. Sugihara, J. Sun, K. Zhang, and J. Zscheischler. Inferring causation from time series in Earth system sciences. Nature Communications 10, 2553.
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• Article
  A. Presbitero, E. Mancini, F. Castiglione, V. V. Krzhizhanovskaya, and R. Quax. Game of neutrophils: modeling the balance between apoptosis and necrosis. BMC Bioinformatics 20(Supplement 6), 475.
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• Article
  E. Weinans, J. J. Lever, S. Bathiany, R. Quax, J. Bascompte, E. H. van Nes, M. Scheffer, and I. A. van de Leemput. Finding the direction of lowest resilience in multivariate complex systems. Journal of the Royal Society Interface 16(159), 20190629.
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2018

• Article
  R. Quax, G. Chliamovitch, A. Dupuis, J.-L. Falcone, B. Chopard, A. G. Hoekstra, and P. M. A. Sloot. Information processing features can detect behavioral regimes of dynamical systems. Complexity 2018, 6047846.
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• Article
  E. Mancini, R. Quax, A. De Luca, S. Fidler, W. Stohr, and P. M. A. Sloot. A study on the dynamics of temporary HIV treatment to assess the controversial outcomes of clinical trials: An in-silico approach. PLoS ONE 13(7), e0200892.
  Abstract Citation Links
• Proceedings
  A. Presbitero, E. Mancini, F. Castiglione, V. V. Krzhizhanovskaya, and R. Quax. Evolutionary Game Theory Can Explain the Choice Between Apoptotic and Necrotic Pathways in Neutrophils. In: Proceedings 2018 IEEE International Conference on Bioinformatics and Biomedicine. ISBN 9781538654880, 9781538654873. pp. 1401-1405.
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• Proceedings
  M. Glombek, J. R. Helmus, M. Lees, R. van den Hoed, and R. Quax. Vulnerability Of Charging Infrastructure, A Novel Approach For Improving Charging Station Deployment. In: Proceedings of 7th Transport Research Arena TRA 2018.
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2017

• Article
  V. A. Traag, R. Quax, and P. M. A. Sloot. Modelling the distance impedance of protest attendance. Physica A : Statistical Mechanics and its Applications 468, pp. 171-182.
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• Article
  R. Quax, O. Har-Shemesh, and P. M. A. Sloot. Quantifying Synergistic Information Using Intermediate Stochastic Variables. Entropy 19(2), 85.
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• Article
  A. Presbitero, R. Quax, V. Krzhizhanovskaya, and P. Sloot. Anomaly Detection in Clinical Data of Patients Undergoing Heart Surgery. Procedia Computer Science 108, pp. 99-108.
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2016

• Article
  O. Har-Shemesh, R. Quax, B. Miñano, A. G. Hoekstra, and P. M. A. Sloot. Nonparametric estimation of Fisher information from real data. Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 93(2), 023301.
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• Article
  J. T. I. Tanzil, J. N. Lee, B. E. Brown, R. Quax, J. A. Kaandorp, J. M. Lough, and P. A. Todd. Luminescence and density banding patterns in massive Porites corals around the Thai-Malay Peninsula, Southeast Asia. Limnology and Oceanography 61(6), pp. 2003-2026.
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• Article
  O. Har-Shemesh, R. Quax, A. G. Hoekstra, and P. M. A. Sloot. Information geometric analysis of phase transitions in complex patterns: the case of the Gray-Scott reaction-diffusion model. Journal of Statistical Mechanics : Theory and Experiment 2016(4), 043301.
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2014

• Article
  W. Duan, R. Quax, M. Lees, X. Qiu, and P. M. A. Sloot. Topology dependent epidemic spreading velocity in weighted networks. Journal of Statistical Mechanics : Theory and Experiment 2014(12), P12020.
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• Article
  T. I. Jung, F. Vogiatzian, O. Har-Shemesh, C. P. Fitzsimons, and R. Quax. Applying Information Theory to Neuronal Networks: From Theory to Experiments. Entropy 16(11), pp. 5721-5737.
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2013

• Article
  R. Quax, D. A. M. C. van de Vijver, D. Frentz, and P. M. A. Sloot. Inferring epidemiological parameters from phylogenetic information for the HIV-1 epidemic among MSM. The European Physical Journal - Special Topics 222(6), pp. 1347-1358.
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• Article
  R. Quax, A. Apolloni, and P. M. A. Sloot. The diminishing role of hubs in dynamical processes on complex networks. Journal of the Royal Society Interface 10(88), 20130568.
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• Article
  R. Quax, D. Kandhai, and P. M. A. Sloot. Information dissipation as an early-warning signal for the Lehman Brothers collapse in financial time series. Scientific Reports 3, 1898.
  Abstract Citation Links
• Article
  R. Quax, A. Apolloni, and P. M. A. Sloot. Towards understanding the behavior of physical systems using information theory. The European Physical Journal - Special Topics 222(6), pp. 1389-1401.
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• PhD Thesis
  R. Quax. Information processing in complex networks. Supervised by P. M. A. Sloot.
  Abstract Citation

2012

• Article
  R. Quax, A. Apolloni, and P. M. A. Sloot. Information processing reveals how microscopic components affect the macroscopic system-state in complex networks. Scientific Reports .
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• Article
  P. M. A. Sloot and R. Quax. Information processing as a paradigm to model and simulate complex systems. Journal of Computational Science 3(5), pp. 247-249.
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2011

• Article
  A. Mei Shan, R. Quax, D. van de Vijver, Y. Zhu, and P. M. A. Sloot. Increasing risk behaviour can outweigh the benefits of antiretroviral drug treatment on the HIV incidence among men-having-sex-with-men in Amsterdam. BMC Infectious Diseases 11(118).
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• Article
  R. Quax, D. A. Bader, and P. M. A. Sloot. SEECN: simulating complex systems using dynamic complex networks. International Journal for Multiscale Computational Engineering 9(2), pp. 201-214.
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2010

• Article
  S. Mei, P. M. A. Sloot, R. Quax, Y. Zhu, and W. Wang. Complex agent networks explaining the HIV epidemic among homosexual men in Amsterdam. Mathematics and Computers in Simulation 80(5), pp. 1018-1030.
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2009

• Proceedings
  R. Quax, D. A. Bader, and P. M. A. Sloot. Simulating individual-based models of epidemics in hierarchical networks. In: Computational Science – ICCS 2009. ISBN 9783642019708. I, pp. 725-734.
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2008

• MSc Thesis
  R. Quax. Modeling and Simulating the Propagation of Infectious Diseases Using Complex Networks. Supervised by David Bader.
  Citation Links