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2024

• Chapter
  G. Zavodszky, C. Spieker, B. Czaja, and B. van Rooij. Cellular Blood Flow Modeling with HemoCell. In: High Performance Computing for Drug Discovery and Biomedicine . ISBN 9781071634493. pp. 351-368.
  Abstract Citation Links
• Article
  Y. Hao, C. Tersteeg, A. G. Hoekstra, and G. Závodszky. The effect of flow-derived mechanical cues on the growth and morphology of platelet aggregates under low, medium, and high shear rates. Computers in Biology and Medicine 180, 109010.
  Abstract Citation Links
• Proceedings
  Y. Hao, A. G. Hoekstra, and G. Závodszky. A Three-Dimensional Fluid-Structure Interaction Model for Platelet Aggregates Based on Porosity-Dependent Neo-Hookean Material. In: Computational Science – ICCS 2024. ISBN 9783031637834. VII, pp. 48-62.
  Abstract Citation Links
• Article
  Christian J. Spieker, Axelle Y. Kern, Netanel Korin, Pierre H. Mangin, Alfons G. Hoekstra, and Gábor Závodszky. Carotid single- and dual-layer stents reduce the wall adhesion of platelets by influencing flow and cellular transport. Computers in Biology and Medicine 183, 109313.
  Abstract Citation Links
• Chapter
  Gábor Závodszky, Dániel Gyürki, György Károlyi, István Szikora, and György Paál. Fractals and Chaos in the Hemodynamics of Intracranial Aneurysms. In: The Fractal Geometry of the Brain. ISBN 9783031476068. p. 397–412.
  Citation Links
• Article
  Benjamin Csippa, Levente Sándor, Gábor Závodszky, István Szikora, and György Paál. Comparison of Flow Reduction Efficacy of Nominal and Oversized Flow Diverters Using a Novel Measurement-assisted in Silico Method. Clinical Neuroradiology 34(3), p. 675–684.
  Citation Links

2023

• Proceedings
  J. van Dijk, G. Zavodszky, A.-L. Varbanescu, A. D. Pimentel, and A. Hoekstra. Building a Fine-Grained Analytical Performance Model for Complex Scientific Simulations. In: Parallel Processing and Applied Mathematics. ISBN 9783031304422. I, pp. 183-196.
  Abstract Citation Links
• Proceedings
  C. J. Spieker, K. Asteriou, and G. Zav́odszky. Simulating Initial Steps of Platelet Aggregate Formation in a Cellular Blood Flow Environment. In: Computational Science – ICCS 2023. ISBN 9783031360244. III, pp. 323-336.
  Abstract Citation Links
• Article
  Y. Hao, G. Závodszky, C. Tersteeg, M. Barzegari, and A. G. Hoekstra. Image-based flow simulation of platelet aggregates under different shear rates. PLoS Computational Biology 19(7), e1010965.
  Abstract Citation Links
• Article
  C. J. Spieker, G. Závodszky, C. Mouriaux, P. H. Mangin, and A. G. Hoekstra. Initial platelet aggregation in the complex shear environment of a punctured vessel model. Physics of Fluids 35(7), 071904.
  Abstract Citation Links

2022

• Article
  B. Czaja, J. de Bouter, M. Heisler, G. Závodszky, S. Karst, M. Sarunic, D. Maberley, and A. Hoekstra. The effect of stiffened diabetic red blood cells on wall shear stress in a reconstructed 3D microaneurysm. Computer methods in biomechanics & biomedical engineering 25(15), pp. 1691-1709.
  Abstract Citation Links
• Article
  A. A. Yakusheva, K. R. Butov, G. A. Bykov, G. Závodszky, A. Eckly, F. I. Ataullakhanov, C. Gachet, M. A. Panteleev, and P. H. Mangin. Traumatic vessel injuries initiating hemostasis generate high shear conditions. Blood Advances 6(16), pp. 4834-4846.
  Abstract Citation Links
• Article
  R. M. Padmos, N. Arrarte Terreros, T. I. Józsa, G. Závodszky, H. A. Marquering, C. B. L. M. Majoie, S. J. Payne, and A. G. Hoekstra. Modelling collateral flow and thrombus permeability during acute ischaemic stroke. Journal of the Royal Society Interface 19(195), 20220649.
  Abstract Citation Links
• Article
  Q. Kimmerlin, S. Moog, A. Yakusheva, C. Ziessel, A. Eckly, M. Freund, G. Závodszky, Y. Knapp, P. Mangin, and F. Lanza. Loss of α4A- and β1-tubulins leads to severe platelet spherocytosis and strongly impairs hemostasis in mice. Blood 140(21), pp. 2290-2299.
  Abstract Citation Links

2021

• Article
  B. J. M. van Rooij, G. Závodszky, A. G. Hoekstra, and D. N. Ku. Haemodynamic flow conditions at the initiation of high-shear platelet aggregation: a combined in vitro and cellular in silico study. Interface Focus 11(1), 20190126.
  Abstract Citation Links
• Article
  R. M. Padmos, N. Arrarte Terreros, T. I. Józsa, G. Závodszky, H. A. Marquering, C. B. L. M. Majoie, and A. G. Hoekstra. Modelling the leptomeningeal collateral circulation during acute ischaemic stroke. Medical Engineering & Physics 91, pp. 1-11.
  Abstract Citation Links
• Proceedings
  R. M. Padmos, T. I. Józsa, W. K. El-Bouri, G. Závodszky, S. J. Payne, and A. G. Hoekstra. Two-Way Coupling Between 1D Blood Flow and 3D Tissue Perfusion Models. In: Computational Science – ICCS 2021. ISBN 9783030779672. III, pp. 670-683.
  Abstract Citation Links
• Article
  S. V. Kovalchuk, V. V. Krzhizhanovskaya, M. Paszyński, G. Závodszky, M. H. Lees, J. Dongarra, and P. M. A. Sloot. 20 years of computational science: Selected papers from 2020 International Conference on Computational Science. Journal of Computational Science 53, 101395.
  Citation Links
• Article
  C. J. Spieker, G. Závodszky, C. Mouriaux, M. van der Kolk, C. Gachet, P. H. Mangin, and A. G. Hoekstra. The Effects of Micro-vessel Curvature Induced Elongational Flows on Platelet Adhesion. Annals of Biomedical Engineering 49(12), p. 3609–3620.
  Abstract Citation Links

2020

• Article
  B. Csippa, D. Gyürki, G. Závodszky, I. Szikora, and G. Paál. Hydrodynamic Resistance of Intracranial Flow-Diverter Stents. Cardiovascular Engineering and Technology 11(1), pp. 1-13.
  Abstract Citation Links
• Proceedings
  B. Czaja, G. Závodszky, and A. Hoekstra. A Heterogeneous Multi-scale Model for Blood Flow. In: Computational Science – ICCS 2020. ISBN 9783030504335. VI, pp. 403-409.
  Abstract Citation Links
• Article
  G. Závodszky, B. Csippa, G. Paál, and I. Szikora. A novel virtual flow diverter implantation method with realistic deployment mechanics and validated force response. International Journal for Numerical Methods in Biomedical Engineering 36(6), e3340.
  Abstract Citation Links
• Article
  B. Czaja, M. Gutierrez, G. Závodszky, D. de Kanter, A. Hoekstra, and O. Eniola-Adefeso. The influence of red blood cell deformability on hematocrit profiles and platelet margination. PLoS Computational Biology 16(3), e1007716.
  Abstract Citation Links
• Article
  K. de Vries, A. Nikishova, B. Czaja, G. Závodszky, and A. G. Hoekstra. Inverse Uncertainty Quantification of a cell model using a Gaussian Process metamodel. International Journal for Uncertainty Quantification 10(4), pp. 333-349.
  Abstract Citation Links
• Article
  B. J. M. van Rooij, G. Závodszky, A. G. Hoekstra, and D. N. Ku. Biorheology of occlusive thrombi formation under high shear: in vitro growth and shrinkage. Scientific Reports 10, 18604.
  Abstract Citation Links
• Proceedings
  V. V. Krzhizhanovskaya, G. Závodszky, M. Lees, J. Dongarra, P. M. A. Sloot, S. Brissos, and J. Teixeira. Preface. In: Computational Science – ICCS 2020. ISBN 9783030503710. I, pp. v-vi.
  Citation Links
• Proceedings
  V. V. Krzhizhanovskaya, G. Závodszky, M. Lees, J. Dongarra, P. M. A. Sloot, S. Brissos, and J. Teixeira. Preface. In: Computational Science – ICCS 2020. ISBN 9783030504267. V, pp. v-vi.
  Citation Links
• Proceedings
  V. V. Krzhizhanovskaya, G. Závodszky, M. Lees, J. Dongarra, P. M. A. Sloot, S. Brissos, and J. Teixeira. Preface. In: Computational Science – ICCS 2020. ISBN 9783030504205. III, pp. v-vi.
  Citation Links
• Proceedings
  V. V. Krzhizhanovskaya, G. Závodszky, M. Lees, J. Dongarra, P. M. A. Sloot, S. Brissos, and J. Teixeira. Preface. In: Computational Science – ICCS 2020. ISBN 9783030504366. VII, pp. v-vi.
  Citation Links
• Proceedings
  V. V. Krzhizhanovskaya, G. Závodszky, M. Lees, J. Dongarra, P. M. A. Sloot, S. Brissos, and J. Teixeira. Preface. In: Computational Science – ICCS 2020. ISBN 9783030504175. II, pp. v-vi.
  Citation Links
• Proceedings
  V. V. Krzhizhanovskaya, G. Závodszky, M. Lees, J. Dongarra, P. M. A. Sloot, S. Brissos, and J. Teixeira. Preface. In: Computational Science – ICCS 2020. ISBN 9783030504335. VI, pp. v-vi.
  Citation Links
• Proceedings
  V. V. Krzhizhanovskaya, G. Závodszky, M. Lees, J. Dongarra, P. M. A. Sloot, S. Brissos, and J. Teixeira. Preface. In: Computational Science – ICCS 2020. ISBN 9783030504236. IV, pp. v-vi.
  Citation Links

2019

• Article
  P. Berg, S. Voß, G. Janiga, S. Saalfeld, A. W. Bergersen, K. Valen-Sendstad, J. Bruening, L. Goubergrits, A. Spuler, T. L. Chiu, A. C. O. Tsang, G. Copelli, B. Csippa, G. Paál, G. Závodszky, F. J. Detmer, B. J. Chung, J. R. Cebral, S. Fujimura, H. Takao, C. Karmonik, S. Elias, N. M. Cancelliere, M. Najafi, D. A. Steinman, V. M. Pereira, S. Piskin, E. A. Finol, M. Pravdivtseva, P. Velvaluri, H. Rajabzadeh-Oghaz, N. Paliwal, H. Meng, S. Seshadhri, S. Venguru, M. Shojima, S. Sindeev, S. Frolov, Y. Qian, Y.-A. Wu, K. D. Carlson, D. F. Kallmes, D. Dragomir-Daescu, and O. Beuing. Multiple Aneurysms AnaTomy CHallenge 2018 (MATCH)—phase II: rupture risk assessment. International Journal of Computer Assisted Radiology and Surgery 14(10), p. 1795–1804.
  Abstract Citation Links
• Article
  G. Závodszky, B. van Rooij, B. Czaja, V. Azizi, D. de Kanter, and A. G. Hoekstra. Red blood cell and platelet diffusivity and margination in the presence of cross-stream gradients in blood flows. Physics of Fluids 31(3), 031903.
  Abstract Citation Links
• Proceedings
  V. Azizi Tarksalooyeh, G. Závodszky, and A. G. Hoekstra. Optimizing Parallel Performance of the Cell Based Blood Flow Simulation Software HemoCell. In: Computational Science – ICCS 2019. ISBN 9783030227449. III, pp. 537-547.
  Abstract Citation Links
• Article
  B. J. M. van Rooij, G. Závodszky, V. W. Azizi Tarksalooyeh, and A. G. Hoekstra. Identifying the start of a platelet aggregate by the shear rate and the cell-depleted layer. Journal of the Royal Society Interface 16(159), 20190148.
  Abstract Citation Links

2018

• Article
  S. Alowayyed, G. Závodszky, V. Azizi, and A. G. Hoekstra. Load balancing of parallel cell-based blood flow simulations. Journal of Computational Science 24, pp. 1-7.
  Abstract Citation Links
• Article
  M. de Haan, G. Zavodszky, V. Azizi, and A. G. Hoekstra. Numerical investigation of the effects of red blood cell cytoplasmic viscosity contrasts on single cell and bulk transport behaviour. Applied Sciences 8(9), 1616.
  Abstract Citation Links
• Proceedings
  J. S. Y. Tan, G. Závodszky, and P. M. A. Sloot. Understanding Malaria Induced Red Blood Cell Deformation Using Data-Driven Lattice Boltzmann Simulations. In: Computational Science – ICCS 2018. ISBN 9783319936987. pp. 392-403.
  Abstract Citation Links
• Article
  B. Czaja, G. Závodszky, V. Azizi Tarksalooyeh, and A. G. Hoekstra. Cell-resolved blood flow simulations of saccular aneurysms: effects of pulsatility and aspect ratio. Journal of the Royal Society Interface 15(146), 20180485.
  Abstract Citation Links
• Article
  B. Csippa, G. Závodszky, G. Paál, and I. Szikora. A new hypothesis on the role of vessel topology in cerebral aneurysm initiation. Computers in Biology and Medicine 103, pp. 244-251.
  Abstract Citation Links
• Article
  V. W. Azizi Tarksalooyeh, G. Závodszky, B. J. M. van Rooij, and A. G. Hoekstra. Inflow and outflow boundary conditions for 2D suspension simulations with the immersed boundary lattice Boltzmann method. Computers & fluids 172, p. 312–317.
  Abstract Citation Links

2017

• Article
  G. Závodszky, B. van Rooij, V. Azizi, and A. Hoekstra. Cellular Level In-silico Modeling of Blood Rheology with An Improved Material Model for Red Blood Cells. Frontiers in Physiology 8, 563.
  Abstract Citation Links
• Article
  G. Závodszky, B. van Rooij, V. Azizi, S. Alowayyed, and A. Hoekstra. Hemocell: a high-performance microscopic cellular library. Procedia Computer Science 108, pp. 159-165.
  Abstract Citation Links

2016

• Article
  A. G. Hoekstra, S. Alowayyed, E. Lorenz, N. Melnikova, L. Mountrakis, B. van Rooij, A. Svitenkov, G. Závodszky, and P. Zun. Towards the virtual artery: a multiscale model for vascular physiology at the physics–chemistry–biology interface. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 374(2080), 20160146.
  Abstract Citation Links
• Proceedings
  Gábor Závodszky, Roland Joó-Kovács, György Paál, and István Szikora. Techniques to integrate patient-specific simulation of aneurysmal blood flow into the clinical workflow. In: ECCOMAS Congress 2016 - Proceedings of the 7th European Congress on Computational Methods in Applied Sciences and Engineering. ISBN 9786188284401. pp. 147-154.
  Abstract Citation Links