Publications of the CSL group

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2009

• Article
  Y. Fomekong-Nanfack, M. Postma, and J. A. Kaandorp. Inferring Drosophila gap gene regulatory network: A parameter sensitivity and perturbation analysis. BMC Systems Biology 3, p. 94.
  Abstract Citation Links
• Proceedings
  A. Suinesiaputra, P. J. de Koning, E. V. Zudilova-Seinstra, J. H. C. Reiber, and R. J. van der Geest. In vivo validations of 3D tubular NURBS fitting model applied on severe stenotic and high curvature MRA of carotid arteries. In: ESMRMB Congress.
  Citation
• PhD Thesis
  V. V. Korkhov. Hierarchical resource management in grid computing. ISBN 9789057761898. Supervised by P. M. A. Sloot and A. S. Z. Belloum.
  Citation
• Article
  P. M. A. Sloot, P. V. Coveney, G. Ertaylan, V. Müller, C. A. Boucher, and M. Bubak. HIV decision support: From molecule to man. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 367(1898), pp. 2691-2703.
  Abstract Citation Links
• Article
  A. Bossenbroek, A. Tirado-Ramos, and P. M. A. Sloot. Grid resource allocation by means of option contracts. IEEE Systems Journal 3(1), pp. 49-64.
  Abstract Citation Links
• PhD Thesis
  F. Dijkstra. Framework for path finding in multi-layer transport networks. ISBN 978-90-814160-1-6. Supervised by P. M. A. Sloot and C. T. A. M. de Laat.
  Citation Links
• Article
  M. B. N. Kouwenhoven, A. G. A. Brown, S. P. Goodwin, S. F. Portegies Zwart, and L. Kaper. Exploring the consequences of pairing algorithms for binary stars. Astronomy & Astrophysics 493(3), pp. 979-1016.
  Abstract Citation Links
• Proceedings
  E. V. Zudilova-Seinstra, P. M. A. Sloot, P. J. H. de Koning, A. Suinesiaputra, R. J. van der Geest, and J. H. C. Reiber. Exploring 2D/3D input techniques for medical image analysis. In: International Conference on Information Visualisation, track Biomedical Visualization (MediViz09), Barcelona, Spain. ISBN 9780769537344. pp. 147-152.
  Abstract Citation Links
• Proceedings
  B. W. van Schooten, E. M. A. G. van Dijk, E. V. Zudilova-Seinstra, P. J. H. de Koning, and J. H. C. Reiber. Evaluating visualisation and navigation techniques for interpretation of MRA data. In: GRAPP 2009. ISBN 9789898111678. pp. 405-408.
  Abstract Citation Links
• Proceedings
  B. W. van Schooten, E. M. A. G. van Dijk, E. V. Zudilova-Seinstra, P. J. H. de Koning, and J. H. C. Reiber. Evaluating Visualization and Navigation Techniques for Interpretation of MRA Data. In: International Conference on Computer Graphics Theory and Applications (GRAPP 2009). pp. 405-408.
  Citation
• Proceedings
  T. Bartyński, M. Bubak, T. Gubała, D. Harężlak, M. Kasztelnik, J. Kocot, and P. Nowakowski. Environment for collaborative e-science applications: CGW08 tutorial. In: Cracow'08 Grid Workshop: October 13-15, 2008 Cracow, Poland: proceedings. ISBN 9788361433002. pp. 58-60.
  Citation
• Proceedings
  G. S. Shirshov and V. V. Krzhizhanovskaya. Developing a model of processes in a shock tube with ignition of combustible gas mixtures [in Russian]. In: International Conference "38th Science Week". pp. 65-66.
  Citation
• Proceedings
  V. A. Zverev, I. S. Kiseleva, and V. V. Krzhizhanovskaya. Developing a model of nickel film growth in a PECVD reactor [in Russian]. In: International Conference "38th Science Week". pp. 59-60.
  Citation
• Article
  P. M. A. Sloot. Crisis computing: beslissingsondersteuning in een complexe wereld. Magazine Nationale Veiligheid en Crisisbeheersing 7(8), pp. 62-63.
  Abstract Citation Links
• Book
  M. Bubak, M. Turała, and K. Wiatr. Cracow '08 Grid Workshop, October 13-15, 2008, Cracow, Poland: proceedings. ISBN 9788361433002.
  Citation
• Article
  E. Lorenz, A. Caiazzo, and A. G. Hoekstra. Corrected momentum exchange method for lattice Boltzmann simulations of suspension flow. Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 79(3), p. 036705.
  Abstract Citation Links
• Proceedings
  D. A. Ivanov, I. Marinov, Y. E. Gorbachev, A. S. Smirnov, and V. V. Krzhizhanovskaya. Computer Simulation of Laser Annealing of a Nanostructured Surface. In: Proceedings of the ASME IDETC/CIE-2009 conference. ISBN 978-0-7918-3856-3. pp. DETC2009-87087.
  Citation
• Proceedings
  V. V. Krzhizhanovskaya, A. S. Smirnov, Y. E. Gorbachev, D. Ivanov, E. Sheykin, R. Wang, and T. Tanaka. Computer Simulation for Improving Deposition Uniformity in Large-Area RF/VHF PECVD Reactors. In: Proceedings of ET Conference.
  Citation
• Article
  S. Murtaza, A. G. Hoekstra, and P. M. A. Sloot. Compute bound and I/O bound Cellular Automata simulations on FPGA logic. ACM Transactions on Reconfigurable Technology and Systems 1(4), p. 23.
  Abstract Citation Links
• Book
  G. Allen, J. Nabrzyski, E. Seidel, G. D. van Albada, P. M. A. Sloot, and J. Dongarra. Computational science - ICCS 2009: 9th International Conference Baton Rouge, LA, USA, May 25-27, 2009: proceedings. ISBN 9783642019692.
  Citation Links
• Chapter
  J. Kroc and P. M. A. Sloot. Complex systems modeling by cellular automata. In: Encyclopedia of artificial intelligence. ISBN 9781599048499. pp. 353-360.
  Abstract Citation
• Article
  A. D. Verkerk, M. M. de Jong, J. K. Rath, M. Brinza, R. E. I. Schropp, W. J. Goedheer, V. V. Krzhizhanovskaya, Y. E. Gorbachev, K. E. Orlov, E. M. Khilkevitch, and A. S. Smirnov. Compensation of decreased ion energy by increased hydrogen dilution in plasma deposition of thin film silicon solar cells at low substrate temperatures. Materials Science and Engineering B-Advanced Functional Solid-State Materials 159-160, pp. 53-56.
  Abstract Citation Links
• Article
  J. B. W. Geerdink and A. G. Hoekstra. Comparing Entropic and Multiple Relaxation Times Lattice Boltzmann Methods for blood flow simulations. International Journal of Modern Physics C 20(5), pp. 721-733.
  Abstract Citation Links
• Proceedings
  V. Krzhizhanovskaya. Challenges and solutions in simulation of plasma discharge in reactive flows. In: EUCASS Aerospace Thematic Workshop on Fundamentals of Aerodynamic-Flow and Combustion Control by Plasmas, Les Houches, France.
  Citation
• Article
  J. Cui, J. A. Kaandorp, P. M. A. Sloot, C. M. Lloyd, and M. V. Filatov. Calcium homeostasis and signaling in yeast cells and cardiac myocytes. FEMS Yeast Research 9(8), pp. 1137-1147.
  Abstract Citation Links
• Article
  A. Caiazzo, J.-L. Falcone, B. Chopard, and A. G. Hoekstra. Asymptotic analysis of Complex Automata models for reaction-diffusion systems. Applied Numerical Mathematics 59(8), pp. 2023-2034.
  Abstract Citation Links
• Proceedings
  W. Rząsa and M. Bubak. Application of Petri nets to evaluation of Grid applications efficiency. In: Cracow '08 Grid Workshop: October 13-15, 2008 Cracow, Poland: proceedings. ISBN 9788361433002. pp. 261-269.
  Citation
• Proceedings
  L. Caroprese, P. M. A. Sloot, B. Ó Nualláin, and E. Zumpano. A logical framework for detecting anomalies in drug resistance algorithms. In: Proceedings of IDEAS'09. ISBN 9781605584027. pp. 23-30.
  Abstract Citation Links
• Article
  A. S. Z. Belloum. A grid-enabled workflow management system for e-Science. issue 147: iSGTW international science Grid This Week .
  Citation Links
• Article
  M. Assel, D. van de Vijver, P. Libin, K. Theys, D. Harezlak, B. Ó Nualláin, P. Nowakowski, M. Bubak, A.-M. Vandamme, S. Imbrechts, R. Sangeda, T. Jiang, D. Frentz, and P. Sloot. A collaborative environment allowing clinical investigations on integrated biomedical databases. Studies in Health Technology and Informatics 147, pp. 51-61.
  Abstract Citation Links
• MSc Thesis
  A. Bossenbroek. A Numerical Approach to Bonus-Malus Executive Compensation Plans. Supervised by B. D. Kandhai, D. R. Fokkema, and B. Bosma.
  Citation Links
• Proceedings
  G. Allen, J. Nabrzyski, E. Seidel, G. D. van Albada, J. Dongarra, and P. M. A. Sloot. In: Computational Science - ICCS 2009: 9th International Conference, Baton Rouge, LA, USA, Proceedings, Part I. ISBN 978-3-642-01969-2. Lecture Notes in Computer Science 5544.
  Citation Links

2008

• Proceedings
  E. V. Zudilova-Seinstra, J. Adriaanse, and A. Berg. Visualizing climate data on a tiled panel display: A user-centered approach. In: IADIS International Conference on Computer Graphics and Visualization 2008. ISBN 9789728924638. pp. 197-202.
  Abstract Citation Links
• Proceedings
  M. Bubak, T. Gubala, M. Malawski, B. Balis, W. Funika, T. Bartynski, E. Ciepiela, D. Harezlak, M. Kasztelnik, J. Kocot, D. Krol, P. Nowakowski, M. Pelczar, J. Wach, M. Assel, and A. Tirado-Ramos. Virtual laboratory for development and execution of biomedical collaborative applications. In: Proceedings of the 21st IEEE international symposium on computer-based medical systems: June 17-19, 2008, Jyväskula, Finland. ISBN 9780769531656. pp. 373-378.
  Abstract Citation Links
• Article
  P. Sloot. ViroLab: From the molecule to the man. eStrategies Projects pp. 53-55.
  Abstract Citation Links
• Article
  P. Sloot, P. Coveney, M. T. Bubak, A.-M. Vandamme, B. Ó Nuallain, D. van de Vijver, and C. Boucher. ViroLab: A collaborative decision support system in viral disease treatment. Reviews in Antiviral Therapy 3, pp. 4-7.
  Abstract Citation Links
• Proceedings
  T. Gubala, B. Baliś, M. Malawski, M. Kasztelnik, P. Nowakowski, M. Assel, D. Harężlak, T. Bartyński, J. Kocot, E. Ciepiela, D. Król, J. Wach, M. Pelczar, W. Funika, and M. Bubak. ViroLab Virtual Laboratory. In: Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings. ISBN 9788391514191. pp. 35-40.
  Citation
• Proceedings
  P. M. A. Sloot, A. Tirado-Ramos, G. Ertaylan, B. O Nuallain, D. van de Vijver, C. A. Boucher, and M. Bubak. VIROLAB: A distributed decision support system for viral disease treatment. In: Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings. ISBN 9788391514191. pp. 33-34.
  Citation
• Article
  J. L. Guisado, F. Fernández de Vega, F. Jiménez Morales, K. A. Iskra, and P. M. A. Sloot. Using cellular automata for parallel simulation of laser dynamics with dynamic load balancing. International Journal of High Performance Systems Architecture (IJHPSA) 1(4), pp. 251-259.
  Abstract Citation Links
• Article
  K. Rycerz, M. Bubak, and P. M. A. Sloot. Using HLA and Grid for distributed multiscale simulations. Lecture Notes in Computer Science 4967, pp. 780-787.
  Abstract Citation Links
• Proceedings
  W. Funika, D. Harężlak, D. Król, P. Pęgiel, and M. Bubak. User interfaces of the Virolab Virtual Laboratory. In: Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings. ISBN 9788391514191. pp. 47-52.
  Citation
• Article
  T. Bartyński, M. Malawski, T. Gubała, and M. Bubak. Universal Grid client: Grid Operation Invoker. Lecture Notes in Computer Science 4967, pp. 1068-1077.
  Abstract Citation Links
• Article
  T. Gubala, M. Kasztelnik, M. Malawski, and M. Bubak. Towards a system-level science support. Lecture Notes in Computer Science pp. 56-65.
  Abstract Citation Links
• Proceedings
  A. Wibisono, Z. Zhao, A. Belloum, and M. Bubak. Towards a Virtual Laboratory for interactive parameter sweep applications on the Grid. In: Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings. ISBN 9788391514191. pp. 266-271.
  Citation
• Chapter
  A. G. Hoekstra, S. F. Portegies Zwart, M. T. Bubak, and P. M. A. Sloot. Towards Distributed Petascale Computing. In: Petascale Computing: Algorithms and Applications. ISBN 978-1-58488-909-0. pp. 147-164.
  Citation Links
• Article
  D. J. W. Evans, P. V. Lawford, J. Gunn, D. Walker, D. R. Hose, R. H. Smallwood, B. Chopard, M. Krafczyk, J. Bernsdorf, and A. Hoekstra. The application of multiscale modelling to the process of development and prevention of stenosis in a stented coronary artery. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 366(1879), pp. 3343-3360.
  Abstract Citation Links
• MSc Thesis
  B. Rexhepi. The Volatility Smile Dynamics Implied by Smile-Consistent Option Pricing Models and Empirical Data. Supervised by B. D. Kandhai and G.-Z. Qiu.
  Citation Links
• Proceedings
  M. A. Yurkin, D. de Kanter, and A. G. Hoekstra. Study of light scattering by a granulated coated sphere - a model of granulated blood cells. In: 11th Electromagnetic & Light Scattering Conference: Extended abstracts: 7-12 September 2008, de Havilland Campus, University of Hertfordshire. pp. 299-302.
  Abstract Citation Links
• Article
  P. M. A. Sloot, S. V. Ivanov, A. V. Boukhanovsky, D. A. M. C. van de Vijver, and C. A. B. Boucher. Stochastic simulation of HIV population dynamics through complex network modelling. International Journal of Computer Mathematics 85(8), pp. 1175-1187.
  Abstract Citation Links
• PhD Thesis
  E. Gaburov. Stellar collisions in young star clusters. Supervised by R. A. M. J. Wijers, P. M. A. Sloot, S. F. Portegies Zwart, and O. R. Pols.
  Citation Links
• Article
  S. Harfst, S. Portegies Zwart, and S. McMillan. Status and future of MUSE. Astronomische Nachrichten 329(9-10), pp. 885-891.
  Abstract Citation Links
• Other: misc
  V. V. Krzhizhanovskaya and A. G. Hoekstra. Special Issue on Simulation of Multiphysics Multiscale Systems. International Journal for Multiscale Computational Engineering 6(1).
  Citation Links
• PhD Thesis
  J. M. Bernsdorf. Simulation of complex flows and multi-physics with the Lattice-Boltzmann method. Supervised by P. M. A. Sloot and A. G. Hoekstra.
  Citation Links
• Article
  V. V. Krzhizhanovskaya and A. G. Hoekstra. Simulation of Multiphysics Multiscale Systems, 5th International Workshop. Lecture Notes in Computer Science pp. 165-166.
  Abstract Citation Links
• Article
  J. Cui, J. A. Kaandorp, and C. M. Lloyd. Simulating in vitro transcriptional response of zinc homeostasis system in Escherichia coli. BMC Systems Biology 2, p. 89.
  Abstract Citation Links
• Article
  J. Cui and J. A. Kaandorp. Simulating complex calcium-calcineurin signaling network. Lecture Notes in Computer Science pp. 110-119.
  Abstract Citation Links
• Article
  D. Groen, S. Portegies Zwart, S. McMillan, and J. Makino. Simulating N-body systems on the grid using dedicated hardware. Lecture Notes in Computer Science pp. 86-95.
  Abstract Citation Links
• Article
  E. Zudilova-Seinstra, N. Yang, L. Axner, A. Wibisono, and D. Vasunin. Service-oriented visualization applied to medical data analysis. Service Oriented Computing and Applications 2(4), pp. 187-201.
  Abstract Citation Links
• Article
  A. Tirado-Ramos. Second Workshop on Teaching Computational Science WTCS 2008. Lecture Notes in Computer Science 5102, pp. 657-658.
  Abstract Citation Links
• Article
  A. Caiazzo, J. L. Falcone, B. Chopard, and A. G. Hoekstra. Scale-splitting error in complex automata models for reaction-diffusion systems. Lecture Notes in Computer Science pp. 291-300.
  Abstract Citation Links
• Article
  M. Wiens, S. I. Belikov, O. V. Kaluzhnaya, T. Adell, H. C. Schröder, S. Perovic-Ottstadt, J. A. Kaandorp, and W. E. G. Müller. Regional and modular expression of morphogenetic factors in the demosponge Lubomirskia baicalensis. Micron 39(4), pp. 447-460.
  Abstract Citation Links
• Article
  S. F. Portegies Zwart and H.-C. Chen. Reconstructing the initial relaxation time of young star clusters in the Large Magellanic Cloud. Astronomical Society of the Pacific conference series 388, pp. 329-336.
  Abstract Citation Links
• Article
  B. Baliś, M. Bubak, and J. Wach. Provenance tracking in the ViroLab Virtual Laboratory. Lecture Notes in Computer Science 4967, pp. 381-390.
  Abstract Citation Links
• Proceedings
  B. Balis, M. Bubak, M. Pelczar, and J. Wach. Provenance tracking and querying in the ViroLab Virtual Laboratory. In: CCGRID 2008: Eighth IEEE International Symposium on Cluster Computing and the Grid: proceedings: 19-22 May, 2008, Lyon, France. ISBN 9780769531564. pp. 675-680.
  Abstract Citation Links
• Proceedings
  B. Balis, M. Bubak, M. Pelczar, and J. Wach. Provenance tracking and querying in ViroLab. In: Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings. ISBN 9788391514191. pp. 71-76.
  Citation
• Article
  B. Baliś, M. Bubak, M. Pelczar, and J. Wach. Provenance querying for end-users: A drug resistance case study. Lecture Notes in Computer Science 5103, pp. 80-89.
  Abstract Citation Links
• Proceedings
  K. Rycerz, M. Bubak, P. Sloot, and V. Getov. Problem solving environment for distributed interactive applications. In: Achievements in European research on grid systems: CoreGRID Integration Workshop 2006 (selected papers), October 19-20, Krakow, Poland. ISBN 9780387728117. pp. 55-66.
  Abstract Citation Links
• Proceedings
  R. M. Badia, R. Sirvent, M. T. Bubak, W. Funika, and P. Machner. Performance monitoring of Grid superscalar: visualization modes. In: CoreGRID integration workshop 2008 -- Integrated Research in Grid Computing: April 24, Hersonissos, Crete, Greece. ISBN 978-960-524-260-2. pp. 266-274.
  Citation
• Proceedings
  R. M. Badia, R. Sirvent, M. Bubak, W. Funika, and P. Machner. Performance monitoring of Grid superscalar with OCM-G/G-PM: visualization modes. In: Integrated research in grid computing. ISBN 9789605242602. pp. 265-274.
  Citation Links
• Proceedings
  R. M. Badia, R. Sirvent, M. Bubak, W. Funika, and P. Machner. Performance monitoring of GRID superscalar with OCM-G/G-PM: Integration issues. In: Achievements in European reseach on Grid systems: CoreGRID Integration Workshop 2006 (selected papers): October 19-20, Krakow, Poland. ISBN 9780387728117. pp. 193-205.
  Abstract Citation Links
• Article
  L. Axner, J. Bernsdorf, T. Zeiser, P. Lammers, J. Linxweiler, and A. G. Hoekstra. Performance evaluation of a parallel sparse lattice Boltzmann solver. Journal of computational Physics 227(10), pp. 4895-4911.
  Abstract Citation Links
• Proceedings
  V. V. Krzhizhanovskaya, V. V. Korkhov, M. A. Zatevakhin, and Y. E. Gorbachev. Parallel distributed computing in modeling of the nanomaterials production technologies. In: Proceedings of the International Conference on Parallel Computing Technologies (PaVT'2008), St. Petersburg, Russia. ISBN 9785696037202. pp. 585-590.
  Abstract Citation Links
• Proceedings
  J. L. Guisado, F. Fernández de Vega, F. Jiménez Morales, K. A. Iskra, and P. M. A. Sloot. Parallel Cellular Automata-based simulation of laser dynamics using dynamic load balancing. In: First International Workshop on Parallel Architectures and Bioinspired Algorithms. ISBN 9788469165126. pp. 49-55.
  Abstract Citation Links
• Article
  M. B. N. Kouwenhoven, A. G. A. Brown, S. P. Goodwin, S. F. Portegies Zwart, and L. Kaper. Pairing mechanisms for binary stars. Astronomische Nachrichten 329(9-10), pp. 984-987.
  Abstract Citation Links
• Proceedings
  M. Malawski, J. Kocot, E. Ciepiela, and M. Bubak. Optimization of application execution in the ViroLab Virtual Laboratory. In: Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings. ISBN 9788391514191. pp. 65-70.
  Abstract Citation Links
• Report
  M. Malawski, J. Kocot, I. Ryszka, M. Bubak, M. Wieczorek, and T. Fahringer. Optimization of application execution in the GridSpace environment.
  Abstract Citation Links
• Proceedings
  M. Malawski, J. Kocot, I. Ryszka, M. Bubak, and M. Wieczorek. Optimization of application execution in the GridSpace environment. In: Integrated research in grid computing. ISBN 9789605242602. pp. 395-405.
  Citation Links
• Article
  N. T. Faber, C. M. Boily, and S. F. Portegies Zwart. On time-dependent orbital complexity in gravitational N-body simulations. Monthly Notices of the Royal Astronomical Society 386(1), pp. 425-439.
  Abstract Citation Links
• Article
  E. Gaburov, A. Gualandris, and S. Portegies Zwart. On the onset of runaway stellar collisions in dense star clusters: I. Dynamics of the first collision. Monthly Notices of the Royal Astronomical Society 384(1), pp. 376-385.
  Abstract Citation Links
• Article
  L. R. Yungelson, E. P. J. van den Heuvel, J. S. Vink, S. F. Portegies Zwart, and A. de Koter. On the evolution and fate of super-massive stars. Astronomy & Astrophysics 477(1), pp. 223-237.
  Abstract Citation Links
• Article
  B. Chopard, J.-L. Falcone, R. Razakanirina, A. Hoekstra, and A. Caiazzo. On the collision-propagation and gather-update formulations of a cellular automata rule. Lecture Notes in Computer Science 5191, pp. 144-151.
  Abstract Citation Links
• Proceedings
  B. Chopard, J.-L. Falcone, R. Razakarinina, A. G. Hoekstra, and A. Caiazzo. On the collision-propagation and gather-update formulations of a Cellular Automata rule. In: Cellular Automata, 8th International Conference on Cellular Automata for Reseach and Industry, ACRI 2008. ISBN 978-3-540-79991-7. Lecture Notes in Computer Science 5191, pp. 144-151.
  Citation
• Proceedings
  W. Funika, M. Zientarski, R. M. Badia, J. Labarta, and M. Bubak. OCM2PRV: performance visualization of Grid applications based on OCM-G and Paraver. In: Integrated research in grid computing. ISBN 9789605242602. pp. 87-98.
  Citation Links
• Proceedings
  D. J. W. Evans, A. G. Hoekstra, J. Gunn, D. Walker, D. R. Hose, R. H. Smallwood, B. Chopard, M. Krafczyk, J. M. Bernsdorf, and P. V. Lawford. Multiscale Modelling: Application of the Complex Automata Simulation Technique (COAST). In: Proceedings of the European Biomechanics Society conference 2008.
  Citation
• MSc Thesis
  L. Y. L. Muller. Multi-touch displays: design, applications and performance evaluation. Supervised by R. G. Belleman.
  Citation Links
• Article
  P. Sloot, P. Coveney, M. T. Bubak, A.-M. Vandamme, B. Ó Nualláin, D. van de Vijver, and C. Boucher. Multi-science decision support for HIV drug resistance treatment. Studies in Health Technology and Informatics 138, pp. 188-198.
  Abstract Citation Links
• Article
  A. G. Hoekstra, J.-L. Falcone, A. Caiazzo, and B. Chopard. Multi-scale modeling with cellular automata: The complex automata approach. Lecture Notes in Computer Science 5191, pp. 192-199.
  Abstract Citation Links
• Article
  B. Balis, M. Bubak, and B. Łabno. Monitoring of Grid scientific workflows. Scientific Programming 16(2-3), pp. 205-216.
  Abstract Citation Links
• Article
  J. A. Kaandorp, J. G. Blom, J. Verhoef, M. Filatov, M. Postma, and W. E. G. Müller. Modelling genetic regulation of growth and form in a branching sponge. Proceedings of the Royal Society B-Biological Sciences 275(1651), pp. 2569-2575.
  Abstract Citation Links
• MSc Thesis
  R. Quax. Modeling and Simulating the Propagation of Infectious Diseases Using Complex Networks. Supervised by David Bader.
  Citation Links
• Article
  E. Gaburov, J. C. jr. Lombardi, and S. Portegies Zwart. Mixing in massive stellar mergers. Monthly Notices of the Royal Astronomical Society. Letters 383(1), pp. L5-L9.
  Abstract Citation Links
• MSc Thesis
  A. Sottoriva. Mathematical Modeling of Tumour Growth and Invasion Using a Hybrid Cellular Automaton. Supervised by P. M. A. Sloot and L. Vermeulen.
  Citation
• Article
  D. Y. Orlova, M. A. Yurkin, A. G. Hoekstra, and V. P. Maltsev. Light scattering by neutrophils: Model, simulation, and experiment. Journal of Biomedical Optics 13(5), p. 054057.
  Abstract Citation Links
• Article
  B. Baliś, M. Bubak, and M. Wegiel. LGF: A flexible framework for exposing legacy codes as services. Future Generation Computer Systems 24(7), pp. 711-719.
  Abstract Citation Links
• Proceedings
  T. Bartyński, M. Malawski, and M. Bubak. Invocation of Grid operations in the ViroLab Virtual Laboratory. In: Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings. ISBN 9788391514191. pp. 59-64.
  Abstract Citation Links
• Proceedings
  T. Szepieniec and M. Bubak. Investigation of the DAG eligible jobs maximization algorithm in a grid. In: Grid 2008: proceedings of the 2008 9th IEEE/ACM International Conference on Grid Computing: September 29th-October 1st, 2008, Tsukuba, Japan. ISBN 9781424425785. pp. 340-345.
  Abstract Citation Links
• Article
  A. Belloum, Z. Zhao, and M. Bubak. International Workshop on Applications of Workflows in Computational Science (AWCS 08). Lecture Notes in Computer Science 5103, pp. 459-462.
  Abstract Citation Links
• Article
  M. Assel, P. Nowakowski, and M. Bubak. Integrating and accessing medical data resources within the ViroLab Virtual Laboratory. Lecture Notes in Computer Science 5103, pp. 90-99.
  Abstract Citation Links
• Article
  V. V. Gvaramadze, A. Gualandris, and S. Portegies Zwart. Hyperfast pulsars as the remnants of massive stars ejected from young star clusters. Monthly Notices of the Royal Astronomical Society 385(2), pp. 929-938.
  Abstract Citation Links
• Proceedings
  M. Malawski, T. Gubała, M. Kasztelnik, T. Bartynski, and M. Bubak. High-level scripting approach for building component-based applications on the Grid. In: Making grids work: Proceedings of the CoreGRID Workshop on Programming Models, Grid and P2P System Architecture, Grid Systems, Tools and Environments, 12-13 June 2007, Heraklion, Crete, Greece. ISBN 9780387784472. pp. 309-321.
  Abstract Citation Links

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