Publications of the CSL group

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2013

• MSc Thesis
  A. Theiakos. GPU-based hedging of a mortgage portfolio using Monte-Carlo and finite difference methods. Supervised by B. D. Kandhai, J. Tas, and H. van der Lem.
  Citation Links
• Article
  J. Borgdorff, J.-L. Falcone, E. Lorenz, C. Bona-Casas, B. Chopard, and A. G. Hoekstra. Foundations of distributed multiscale computing: formalization, specification, and analysis. Journal of Parallel and Distributed Computing 73(4), pp. 465-483.
  Abstract Citation Links
• MSc Thesis
  S. van Geldermalsen. FlowCL -- Declarative dataflow API for heterogeneous platform computing. Supervised by S. Olabarriaga, A. S. Z. Belloum, and H. Marquering.
  Citation Links
• Chapter
  B. E. Pengel, V. V. Krzhizhanovskaya, N. B. Melnikova, G. S. Shirshov, A. R. Koelewijn, A. L. Pyayt, and I. I. Mokhov. Flood early warning system: sensors and internet. In: Floods: from risk to opportunity. ISBN 9781907161353. pp. 445-453.
  Abstract Citation Links
• Article
  D. Groen, J. Borgdorff, C. Bona-Casas, J. Hetherington, R. W. Nash, S. J. Zasada, I. Saverchenko, M. Mamonski, K. Kurowski, M. O. Bernabeu, A. G. Hoekstra, and P. V. Coveney. Flexible composition and execution of high performance, high fidelity multiscale biomedical simulations. Interface Focus 3(2), 20120087.
  Abstract Citation Links
• Proceedings
  C. Bona-Casas, J. Borgdorff, H. Tahir, and A. G. Hoekstra. First results on a 3D model for in-stent restenosis.
  Citation Links
• MSc Thesis
  C. Chen. Explicit modelling of membrane-bound structures in the cellular Potts model. Supervised by R. M. H. Merks and J. A. Kaandorp.
  Citation
• MSc Thesis
  L. J. Dijkstra. Essays in Computational Science. Supervised by P. M. A. Sloot.
  Citation
• PhD Thesis
  J. T. I. Tanzil. Environmental controls of coral growth: Data driven multi-scale analyses of rates and patterns of growth in massive Porites corals around the Thai-Malay Peninsula. ISBN 9789810783372. Supervised by P. M. A. Sloot and J. A. Kaandorp.
  Abstract Citation
• Proceedings
  M. Wagner, W. Cai, and M. H. Lees. Emergence by strategy: Flocking boids and their fitness in relation to model complexity. In: Proceedings of the 2013 Winter Simulation Conference. ISBN 9781479939503, 9781479920778. pp. 1479-1490.
  Abstract Citation Links
• Article
  V. V. Krzhizhanovskaya, N. B. Melnikova, A. M. Chirkin, S. V. Ivanov, A. V. Boukhanovsky, and P. M. A. Sloot. Distributed Simulation of City Inundation by Coupled Surface and Subsurface Porous Flow for Urban Flood Decision Support System. Procedia Computer Science 18, pp. 1046-1056.
  Abstract Citation Links
• Article
  M. Ben Belgacem, B. Chopard, J. Borgdorff, M. Mamoński, K. Rycerz, and D. Harezlak. Distributed Multiscale Computations using the MAPPER framework. Procedia Computer Science 18, pp. 1106-1115.
  Abstract Citation Links
• Article
  B. E. Nichols, C. A. B. Boucher, J. H. van Dijk, P. E. Thuma, J. L. Nouwen, R. Baltussen, J. van de Wijgert, P. M. A. Sloot, and D. A. M. C. van de Vijver. Cost-effectiveness of Pre-Exposure Prophylaxis (PrEP) in preventing HIV-1 infections in rural Zambia: a modeling study. PLoS ONE 8(3), e59549.
  Abstract Citation Links
• Article
  V. Alexandrov, M. Lees, V. Krzhizhanovskaya, J. Dongarra, and P. M. A. Sloot. Computation at the Frontiers of Science, preface for ICCS 2013. Procedia Computer Science 18, pp. 1-9.
  Citation Links
• PhD Thesis
  N. Zarrabi. Complex networks and agent-based models of HIV epidemic. Supervised by P. M. A. Sloot.
  Abstract Citation
• Article
  N. Zarrabi, M. C. F. Prosperi, R. G. Belleman, S. Di Giambenedetto, M. Fabbiani, A. De Luca, and P. M. A. Sloot. Combining social and genetic networks to study HIV transmission in mixing risk groups. The European Physical Journal - Special Topics 222(6), pp. 1377-1387.
  Abstract Citation Links
• PhD Thesis
  C. V. T. Tamulonis. Cell-based models. Supervised by P. M. A. Sloot and J. A. Kaandorp.
  Citation
• Article
  P. Ramos-Silva, F. Marin, J. Kaandorp, and B. Marie. Biomineralization toolkit: the importance of sample cleaning prior to the characterization of biomineral proteomes. Proceedings of the National Academy of Sciences of the United States of America 110(24), pp. E2144-E2146.
  Citation Links
• Article
  A. Adamatzky, M. Lees, and P. Sloot. Bio-development of motorway networks in the Netherlands: a slime mould approach. Advances in Complex Systems 16(02n03), 1250034.
  Abstract Citation Links
• Article
  A. Adamatzky, S. Akl, R. Alonso-Sanz, W. van Dessel, Z. Ibrahim, A. Ilachinski, J. Jones, A. V. D. M. Kayem, G. J. Martínez, P. de Oliveira, M. Prokopenko, T. Schubert, P. Sloot, E. Strano, and X.-S. Yang. Are motorways rational from slime mould's point of view?. International Journal of Parallel, Emergent and Distributed Systems 28(3), pp. 230-248.
  Abstract Citation Links
• Proceedings
  C. Bona-Casas, J. Borgdorff, H. Tahir, and A. G. Hoekstra. An off-lattice 3D model for in-stent restenosis.
  Citation
• Article
  A. L. Pyayt, A. P. Kozionov, I. I. Mokhov, B. Lang, V. V. Krzhizhanovskaya, and P. M. A. Sloot. An Approach for Real-time Levee Health Monitoring Using Signal Processing Methods. Procedia Computer Science 18, pp. 2357-2366.
  Abstract Citation Links
• Article
  P. M. A. Sloot, G. Kampis, and L. Gulyás. Advances in dynamic temporal networks: understanding the temporal dynamics of complex adaptive networks. The European Physical Journal - Special Topics 222(6), pp. 1287-1293.
  Abstract Citation Links
• Proceedings
  Francesco Pennella, Piergiorgio Gentile, Marco A. Deriu, Diego Gallo, Alessandro Schiavi, Gianluca Ciardelli, Eric Lorenz, Alfons G. Hoekstra, Alberto Audenino, and Umberto Morbiducci. A virtual test bench to study transport phenomena in 3D porous scaffolds using lattice boltzmann simulations. In: ASME 2013 Summer Bioengineering Conference, SBC 2013. ISBN 9780791855607.
  Citation Links
• Article
  A. Bankhead, E. Mancini, A. C. Sims, R. S. Baric, S. McWeeney, and P. M. A. Sloot. A simulation framework to investigate in vitro viral infection dynamics. Journal of Computational Science 4(3), pp. 127-134.
  Abstract Citation Links
• Proceedings
  N. Hu, M. H. Lees, and S. Zhou. A pattern-based modeling framework for simulating human-like pedestrian steering behaviors. In: VRST 2013 : proceedings. ISBN 9781450323796. pp. 179-188.
  Abstract Citation Links
• Proceedings
  J. Xiao, H. Aydt, M. Lees, and A. Knoll. A partition based match making algorithm for taxi sharing. In: 2013 16th International IEEE Conference on Intelligent Transportation Systems - (ITSC). ISBN 9781479929146, 9781479929139. pp. 2393-2400.
  Abstract Citation Links
• Proceedings
  H. Aydt, Y. Xu, M. Lees, and A. Knoll. A Multi-threaded Execution Model for the Agent-based SEMSim Traffic Simulation. In: AsiaSim 2013. ISBN 9783642450372. pp. 1-12.
  Abstract Citation Links
• MSc Thesis
  J. Tyree. A Linear Boundary for the Heston Model With Parallel ADI Finite Differencing on GPUs. Supervised by B. D. Kandhai.
  Citation Links

2012

• Proceedings
  M. A. Prosnikov and V. V. Krzhizhanovskaya. Обзор основых методов и программ для моделирования наноразмерных систем. In: ХLI Неделя науки СПбГПУ. 6, pp. 128-130.
  Citation
• Proceedings
  V. S. Lebanin and V. V. Krzhizhanovskaya. Модель кинетики реакции двух нейтральных частиц в газе и плазме. In: ХLI Неделя науки СПбГПУ. 6, pp. 146-149.
  Citation
• Proceedings
  S. A. Konakov and V. V. Krzhizhanovskaya. Моделирование механизма образования силаммониевых радикалов в технологии плазмохимического осаждения нитрида кремния азота с малым содержанием. In: ХLI Неделя науки СПбГПУ. 6, pp. 132-135.
  Citation
• Article
  G. Qiu, D. Kandhai, N. F. Johnson, and P. M. A. Sloot. Understanding complex dynamics in derivatives finance: why do options markets smile?. Advances in Complex Systems 15(5), 1250050.
  Abstract Citation Links
• Article
  J. U. Hammel, M. V. Filatov, J. Herzen, F. Beckmann, J. A. Kaandorp, and M. Nickel. The non-hierarchical, non-uniformly branching topology of a leuconoid sponge aquiferous system revealed by 3D reconstruction and morphometrics using corrosion casting and X-ray microtomography. Acta Zoologica 93(2), pp. 160-170.
  Abstract Citation Links
• Article
  D. Botman and J. A. Kaandorp. Spatial gene expression quantification: a tool for analysis of in situ hybridizations in sea anemone Nematostella vectensis. BMC Research Notes 5, p. 555.
  Abstract Citation Links
• Proceedings
  A. Mordvintsev, V. Krzhizhanovskaya, M. Lees, and P. Sloot. Simulation of city evacuation coupled to flood dynamics. In: PED 2012: accompanying booklet: abstracts of all presentations and posters: 6th International Conference on Pedestrian and Evacuation Dynamics. pp. [156-158].
  Citation
• Proceedings
  A. L. Pyayt, I. I. Mokhov, A. P. Kozionov, V. T. Kusherbaeva, V. V. Krzhizhanovskaya, B. J. Broekhuijsen, and R. J. Meijer. Signal Processing Methods for Flood Early Warning Systems. In: Proceedings of 10th International Conference on Hydroinformatics 2012: Hamburg, Germany. ISBN 9783941492455.
  Abstract Citation
• Proceedings
  R. Cushing, S. Koulouzis, R. Strijkers, A. S. Z. Belloum, and M. Bubak. Service Level Management for executable papers. In: Euro-Par 2011: Parallel Processing Workshops. ISBN 9783642297403. 2, pp. 116-123.
  Abstract Citation Links
• PhD Thesis
  Q. C. Bui. Relation extraction methods for biomedical literature. ISBN 9789064645785. Supervised by P. M. A. Sloot.
  Abstract Citation
• Book
  H. Ali, Y. Shi, D. Khazanchi, M. Lees, G. D. van Albada, J. Dongarra, and P. M. A. Sloot. Proceedings of the International Conference on Computational Science, ICCS 2012.
  Citation Links
• Chapter
  A. Adamatzky, M. Lees, and P. M. A. Sloot. Physarum in the Netherlands: responding to the flood. In: Bioevaluation of world transport networks. ISBN 9789814407038. pp. 213-234.
  Citation Links
• Proceedings
  S. Varma, M. C. Villa Uriol, P. Lamata, E. Schileo, B. Ó Nualláin, J. Fenner, N. S. H. Smith, and D. R. Hose. Patient-Centred Multi-scale Computational Workflows. In: VPH Conference 2012, London.
  Citation
• Proceedings
  T. Szepieniec, J. Kocot, T. Schaaf, O. Appleton, M. Heikkurinen, A. S. Z. Belloum, J. Serrat-Fernández, and M. Metzker. On importance of Service Level Management in Grids. In: Euro-Par 2011: Parallel Processing Workshops. ISBN 9783642297403. 2, pp. 64-75.
  Abstract Citation Links
• Article
  P. Ramos-Silva, S. Benhamada, N. Le Roy, B. Marie, N. Guichard, I. Zannella-Cléon, L. Plasseraud, M. Corneillat, G. Alcaraz, J. Kaandorp, and F. Marin. Novel molluskan biomineralization proteins retrieved from proteomics: a case study with Upsalin. ChemBioChem 13(7), pp. 1067-1078.
  Abstract Citation Links
• Article
  J. Borgdorff, D. Groen, S. Ferlin, I. Saverchenko, J. Suter, A. G. Hoekstra, and P. V. Coveney. Multiscale Simulations on Distributed European e-Infrastructures. Inside 10(1), pp. 72-77.
  Citation Links
• Proceedings
  J. A. Kaandorp, D. Botman, C. Tamulonis, and R Dries. Multi-scale modeling of gene regulation of morphogenesis. In: How the World Computes. ISBN 9783642308703. pp. 355-362.
  Abstract Citation Links
• Proceedings
  V. V. Krzhizhanovskaya and N. B. Melnikova. Modeling earthen dikes: sensitivity analysis and calibration of soil properties based on sensor data. In: Proceedings of the 12th International Conference on Computational and Mathematical Methods in Science and Engineering: Murcia, Spain, July 2-5, 2012: CMMSE. - Vol. 4. ISBN 9788461553921. pp. 1414-1424.
  Citation Links
• Article
  R. Quax, A. Apolloni, and P. M. A. Sloot. Information processing reveals how microscopic components affect the macroscopic system-state in complex networks. Scientific Reports .
  Citation Links
• Article
  P. M. A. Sloot and R. Quax. Information processing as a paradigm to model and simulate complex systems. Journal of Computational Science 3(5), pp. 247-249.
  Citation Links
• Article
  E. Mancini, F. Gastiglione, M. Bernaschi, A. de Luca, and P. M. A. Sloot. HIV reservoirs and immune surveillance evasion cause the failure of structured treatment interruptions: a computational study. PLoS ONE 7(4), e36108.
  Abstract Citation Links
• Article
  Y. Kim, R. Sinclair, N. Chindapol, J. A. Kaandorp, and E. De Schutter. Geometric theory predicts bifurcations in minimal wiring cost trees in biology are flat. PLoS Computational Biology 8(4), p. e1002474.
  Abstract Citation Links
• Article
  X. Wang, H. C. Schröder, K. Wang, J. A. Kaandorp, and W. E. G. Müller. Genetic, biological and structural hierarchies during sponge spicule formation: From soft sol-gels to solid 3D silica composite structures. Soft Matter 8(37), pp. 9501-9518.
  Abstract Citation Links
• Article
  B. Pengel, G. S. Shirshov, V. V. Krzhizhanovskaya, N. B. Melnikova, A. Koelewijn, A. L. Pyayt, and I. I. Mokhov. Flood Early Warning System: Sensors and Internet. Journal of Flood Risk Management .
  Citation
• MSc Thesis
  K. W. Kongsgård. Expertise Modeling on cQA Sites -- News Feed Optimization. Supervised by E. Meij.
  Citation Links
• MSc Thesis
  P. Firmpas Nisantzis. Evolving collective and single cell motility in a computational model of tumor invasion. Supervised by R. M. H. Merks and J. A. Kaandorp.
  Citation Links
• Article
  S. Koulouzis, R. Cushing, K. A. Karasavvas, A. Belloum, and M. Bubak. Enabling web services to consume and produce large datasets. IEEE Internet Computing 16(1), pp. 52-60.
  Abstract Citation Links
• Article
  H. Ali, Y. Shi, D. Khazanchi, M. Lees, G. D. van Albada, J. Dongarra, and P. M. A. Sloot. Empowering Science through Computing, preface for ICCS 2012. Procedia Computer Science 9, pp. 1-6.
  Citation Links
• Proceedings
  S. Varma, C. Pedronaci, D. Kalra, M. C. Villa Uriol, P. Lamata, E. Schileo, B. Ó Nualláin, N. S. H. Smith, S. Wood, and D. R. Hose. Embodying a Patient Avatar for Computational Workflows. In: VPH Conference 2012, London.
  Citation
• Proceedings
  S. J. Zasada, M. Mamonski, D. Groen, J. Borgdorff, I. Saverchenko, T. Piontek, K. Kurowski, and P. V. Coveney. Distributed infrastructure for multiscale computing. In: 2012 IEEE/ACM 16th International Symposium on Distributed Simulation and Real Time Applications: DS-RET 2012: Proceedings. ISBN 9781467329545. pp. 65-74.
  Abstract Citation Links
• Proceedings
  A. L. Pyayt, I. I. Mokhov, A. P. Kozionov, V. T. Kusherbaeva, B. Lang, V. V. Krzhizhanovskaya, and R. J. Meijer. Data-driven modelling for flood defence structure analysis. In: Comprehensive flood risk management: research for policy and practice. ISBN 9780415621441. pp. 301-306.
  Abstract Citation
• Proceedings
  A. L. Pyayt, I. I. Mokhov, A. Kozionov, and V. Kusherbaeva. Data-driven methods in UrbanFlood project for flood defence structure measurements analysis.
  Citation
• Proceedings
  C. D. Erdbrink, V. V. Krzhizhanovskaya, and P. M. A. Sloot. Controlling flow-induced vibrations of flood barrier gates with data-driven and finite-element modelling. In: Comprehensive flood risk management: research for policy and practice. ISBN 9780415621441. pp. 425-434.
  Abstract Citation
• Proceedings
  V. V. Krzhizhanovskaya, N. B. Melnikova, G. S. Shirshov, F. I. Rusadi, R. G. Belleman, J. Lhomme, B. P. Gouldby, A. Topple, and J. Simm. Computational models in flood early warning systems. In: Comprehensive flood risk management: research for policy and practice. ISBN 9780415621441. p. 1533.
  Citation
• Article
  N. Zarrabi, M. Prosperi, R. G. Belleman, M. Colafigli, A. De Luca, and P. M. A. Sloot. Combining epidemiological and genetic networks signifies the importance of early treatment in HIV-1 transmission. PLoS ONE 7(9), p. e46156.
  Abstract Citation Links
• Chapter
  A. Adamatzky, S. Akl, R. Alonso-Sanz, W. van Dessel, Z. Ibrahim, A. Ilachinski, J. Jones, A. V. D. M. Kayem, G. J. Martínez, P. de Oliveira, M. Prokopenko, T. Schubert, P. Sloot, E. Strano, and X.-S. Yang. Biorationality of motorways. In: Bioevaluation of world transport networks. ISBN 9789814407038. pp. 309-325.
  Citation Links
• Article
  Q. C. Bui and P. M. A. Sloot. A robust approach to extract biomedical events from literature. Bioinformatics 28(20), pp. 2654-2661.
  Abstract Citation Links
• Article
  J. Borgdorff, C. Bona-Casas, M. Mamonski, K. Kurowski, T. Piontek, B. Bosak, K. Rycerz, E. Ciepiela, T. Gubala, D. Harezlak, M. Bubak, E. Lorenz, and A. G. Hoekstra. A distributed multiscale computation of a tightly coupled model using the Multiscale Modeling Language. Procedia Computer Science 9, pp. 596-605.
  Abstract Citation Links
• MSc Thesis
  R. Dries. 3D mass-spring model for studying early development of the starlet sea anemone nematostella vectensis. Supervised by C. Tamulonis and J. A. Kaandorp.
  Citation

2011

• Proceedings
  S. A. Konakov and V. V. Krzhizhanovskaya. Сравнение двух моделей плазмохимических процессов при осаждении нитрида Кемния. In: ХL Неделя науки СПбГПУ. 6, pp. 132-134.
  Citation Links
• Proceedings
  A. S. Afanasieva, S. A. Ponyaev, and V. V. Krzhizhanovskaya. Подготовка задачи численного моделирования синтеза фуллеренов в углеродсодержащей плазме дугового разряда. In: ХL Неделя науки СПбГПУ. 6, pp. 129-131.
  Citation Links
• Proceedings
  V. S. Lebanin and V. V. Krzhizhanovskaya. Обзор плазмохимических методов получения нитрида Кремния. In: ХL Неделя науки СПбГПУ. 6, pp. 131-132.
  Citation Links
• Proceedings
  I. S. Kiseleva and V. V. Krzhizhanovskaya. Моделирование аргоновой плазмы в установке плазмохимического осаждения с помощью пакета ESI CFD-ACE+. In: ХL Неделя науки СПбГПУ. 6, pp. 126-128.
  Citation Links
• Proceedings
  S. A. Konakov and V. V. Krzhizhanovskaya. Компьютерное моделирование процесса осаждения многослойных структур на основе нитрида кремния методом РЕСVD. In: Наука и инновации в технических университетах : Материалы пятого всероссийского форума студентов, аспирантов и молодых ученых. pp. 12-13.
  Citation
• Article
  N. B. Melnikova, G. S. Shirshov, and V. V. Krzhizhanovskaya. Virtual Dike: multiscale simulation of dike stability. Procedia Computer Science 4, pp. 791-800.
  Abstract Citation Links
• Proceedings
  N. B. Melnikova, G. S. Shirshov, V. V. Krzhizhanovskaya, and N. N. Shabrov. Virtual Dike and Flood Simulator: Parallel distributed computing for flood early warning systems. In: Параллельные вычислительные технологии (ПаВТ’2011). ISBN 9785696040905. pp. 365-373.
  Abstract Citation Links
• PhD Thesis
  G. Qiu. Understanding the complex dynamics of financial markets through microsimulation. ISBN 9789491211010. Supervised by P. M. A. Sloot and D. Kandhai.
  Abstract Citation
• PhD Thesis
  J. T. Mościcki. Understanding and mastering dynamics in computing grids: processing moldable tasks with user-level overlay. Supervised by M. T. Bubak and P. M. A. Sloot.
  Abstract Citation
• Proceedings
  J. Bernsdorf, G. Berti, B. Chopard, J. Hegewald, M. Krafczyk, D. Wang, E. Lorenz, and A. Hoekstra. Towards distributed multiscale simulation of biological processes. In: The Seventh IEEE International Conference on e-Science. Workshops: eScienceW 2011: proceedings: Stockholm, Sweden, 5-8 December 2011. ISBN 9781467300261. pp. 89-96.
  Abstract Citation Links
• MSc Thesis
  I. Niculescu. Towards a cell-based model of Neointimal Hyperplasia with Cellular Potts Model. Supervised by A. G. Hoekstra and R. M. H. Merks.
  Citation Links
• Article
  R. Strijkers, R. Cushing, D. Vasyunin, C. de Laat, A. S. Z. Belloum, and R. Meijer. Toward executable scientific publications. Procedia Computer Science 4, pp. 707-715.
  Abstract Citation Links
• Proceedings
  B. Pengel, L. Wentholt, V. V. Krzhizhanovskaya, G. Shirshov, N. Melnikova, B. Gouldby, A. Koelewijn, A. Pyayt, I. Mokhov, N. Pals, R. Meijer, and J. Broekhuijsen. The urbanflood early warning system: sensors and coastal flood safety. In: Proceedings of the CoastGIS 2011 Conference. ISBN 9788889405246. 4, pp. 20-27.
  Citation
• Article
  M. A. Yurkin and A. G. Hoekstra. The discrete-dipole-approximation code ADDA: capabilities and known limitations. Journal of Quantitative Spectroscopy & Radiative Transfer 112(13), pp. 2234-2247.
  Abstract Citation Links
• Chapter
  J. A. Kaandorp, M. Filatov, and N. Chindapol. Simulating and quantifying the environmental influence on coral colony growth and form. In: Coral reefs: An ecosystem in transition. ISBN 9789400701137. pp. 177-185.
  Abstract Citation Links
• Proceedings
  R. S. Cushing, S. Koulouzis, A. S. Z. Belloum, R. J. Strijkers, and M. T. Bubak. Service Level Management for Executable Papers. In: 7th International European Conference on Parallel and Distributed Computing (Euro-Par 2011), workshop MDGS2011.
  Citation Links
• Article
  R. Quax, D. A. Bader, and P. M. A. Sloot. SEECN: simulating complex systems using dynamic complex networks. International Journal for Multiscale Computational Engineering 9(2), pp. 201-214.
  Abstract Citation Links
• Article
  J. T. Mościcki, M. Lamanna, M. Bubak, and P. M. A. Sloot. Processing moldable tasks on the grid: late job binding with lightweight user-level overlay. Future Generation Computer Systems 27(6), pp. 725-736.
  Abstract Citation Links
• Book
  M. Sato, S. Matsuoka, P. M. A. Sloot, G. D. van Albada, and J. Dongarra. Proceedings of the International Conference on Computational Science, ICCS 2011.
  Citation Links
• Article
  M. Sato, S. Matsuoka, G. D. van Albada, J. Dongarra, and P. M. A. Sloot. Preface. Procedia Computer Science 4, pp. 1-6.
  Citation Links
• Proceedings
  R. Cushing, S. Koulouzis, A. S. Z. Belloum, and M. Bubak. Prediction-based auto-scaling of scientific workflows. In: Proceedings of the 9th International Workshop on Middleware for Grids, Clouds and e-Science: MGC 2011, co-located with ACM/IFIP/USENIX 12th International Middleware Conference, December 12-16, 2011, Lisbon, Portugal. ISBN 9781450310680. p. 1.
  Abstract Citation Links
• MSc Thesis
  F. Speelman. Position-Based Quantum Cryptography and the Garden-Hose Game. Supervised by H. Buhrman and C. Schaffner.
  Citation Links
• MSc Thesis
  J. Teunissen. Particle based 3D modeling of positive streamer inception. Supervised by U. Ebert.
  Citation Links
• Article
  V. V. Krzhizhanovskaya. Overstromingsrisico's in Kaart Brenger met de HPC Cloud. "High Performance Computing E-Science Support", SARA Jaarverslag 2010 pp. 38-38.
  Citation
• Chapter
  V. P. Maltsev, A. G. Hoekstra, and M. A. Yurkin. Optics of white blood cells: optical models, simulations, and experiments. In: Advanced optical flow cytometry: methods and disease diagnoses. ISBN 9783527409341. pp. 63-93.
  Citation Links
• Article
  H. Tahir, A. G. Hoekstra, E. Lorenz, P. V. Lawford, D. R. Hose, J. Gunn, and D. J. W. Evans. Multi-scale simulations of the dynamics of in-stent restenosis: impact of stent deployment and design. Interface Focus 1(3), pp. 365-373.
  Abstract Citation Links
• PhD Thesis
  L. A. Naumov. Modelling with cellular automata: problem solving environments and multidimensional applications. ISBN 9789057762253. Supervised by P. M. A. Sloot and A. G. Hoekstra.
  Abstract Citation
• Article
  C. Tamulonis, M. Postma, and J. Kaandorp. Modeling filamentous cyanobacteria reveals the advantages of long and fast trichomes for optimizing light exposure. PLoS ONE 6(7).
  Abstract Citation Links
• Article
  A. L. Pyayt, I. I. Mokhov, B. Lang, V. V. Krzhizhanovskaya, and R. J. Meijer. Machine learning methods for environmental monitoring and flood protection. World Academy of Science, Engineering and Technology. Proceedings 78, pp. 118-123.
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• Proceedings
  A. L. Pyayt, I. I. Mokhov, B. Lang, V. V. Krzhizhanovskaya, and R. J. Meijer. Machine Learning Methods for Environmental Monitoring and Flood Protection. World Academy of Science, Engineering and Technology 78, pp. 118-123.
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  A. Mei Shan, R. Quax, D. van de Vijver, Y. Zhu, and P. M. A. Sloot. Increasing risk behaviour can outweigh the benefits of antiretroviral drug treatment on the HIV incidence among men-having-sex-with-men in Amsterdam. BMC Infectious Diseases 11(118).
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• Proceedings
  M. Gerhards, V. Sander, A. Belloum, D. Vasunin, and A. Benabdelkader. HisT/PLIER: A two-fold Provenance Approach for Grid-enabled Scientific Workflows using WS-VLAM. In: 2011 12th IEEE/ACM International Conference on Grid Computing : Grid 2011. ISBN 9780769545721, 9780769545726. pp. 224-225.
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