Publications of the CSL group

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2014

• Article
  M. Wagner, W. Cai, M. H. Lees, and H. Aydt. Evolving Agent-based Models Using Complexification Approach. Procedia Computer Science 29, pp. 310-321.
  Abstract Citation Links
• Article
  J. O. Oelerich, F. Jansson, A. V. Nenashev, F. Gebhard, and S. D. Baranovskii. Energy position of the transport path in disordered organic semiconductors. Journal of Physics-Condensed Matter 26(25), 255801.
  Abstract Citation Links
• Article
  H. Tahir, C. Bona-Casas, A. J. Narracott, J. Iqbal, J. Gunn, P. Lawford, and A. G. Hoekstra. Endothelial repair process and its relevance to longitudinal neointimal tissue patterns: Comparing histology with in silico modelling. Journal of the Royal Society Interface 11(94), 20140022.
  Abstract Citation Links
• Proceedings
  Y. Xu, W. Cai, H. Aydt, and M. Lees. Efficient graph-based dynamic load-balancing for parallel large-scale agent-based traffic simulation. In: Proceedings of the 2014 Winter Simulation Conference: exploring big data through simulation: December 7-10, 2014, Westin Savannah Harbor Resort, Savannah, GA. ISBN 9781479974849. pp. 3483-3494.
  Abstract Citation Links
• Article
  C. S. L. de Graaf, Q. Feng, D. Kandhai, and C. W. Oosterlee. Efficient Computation of Exposure Profiles for Counterparty Credit Risk. International Journal of Theoretical and Applied Finance 17(4), 1450024.
  Abstract Citation Links
• Proceedings
  J. Zhong, W. Cai, L. Luo, and M. Lees. EA-based evacuation planning using agent-based crowd simulation. In: Proceedings of the 2014 Winter Simulation Conference: exploring big data through simulation: December 7-10, 2014, Westin Savannah Harbor Resort, Savannah, GA. ISBN 9781479974849. pp. 395-406.
  Abstract Citation Links
• Proceedings
  A. Bilyatdinova, A. Dukhanov, K. Bochenina, A. V. Boukhanovsky, V. V. Krzhizhanovskaya, and P. M. A. Sloot. Dutch-Russian Double Degree Master's Program Curricula in Computational Science and High Performance Computing. In: 2014 IEEE Frontiers in Education Conference. ISBN 9781479939213, 9781479939220.
  Abstract Citation Links
• Article
  A. V. Dukhanov, V. V. Krzhizhanovskaya, A. Bilyatdinova, A. V. Boukhanovsky, and P. M. A. Sloot. Double-degree Master's Program in Computational Science: Experiences of ITMO University and University of Amsterdam. Procedia Computer Science 29, pp. 1433-1445.
  Abstract Citation Links
• Article
  J. Borgdorff, M. Mamonski, B. Bosak, K. Kurowski, M. Ben Belgacem, B. Chopard, D. Groen, P. V. Coveney, and A. G. Hoekstra. Distributed multiscale computing with MUSCLE 2, the Multiscale Coupling Library and Environment. Journal of Computational Science 5(5), pp. 719-731.
  Abstract Citation Links
• PhD Thesis
  J. Borgdorff. Distributed multiscale computing. ISBN 9789462592353. Supervised by P. M. A. Sloot and A. G. Hoekstra.
  Abstract Citation Links
• PhD Thesis
  A. L. Pyayt. Data-driven methods in application to flood defence systems monitoring and analysis. ISBN 9789064648052. Supervised by P. M. A. Sloot and V. V. Krzhizhanovskaya.
  Abstract Citation Links
• Article
  D. Abramson, M. Lees, V. V. Krzhizhanovskaya, J. Dongarra, and P. M. A. Sloot. Big Data Meets Computational Science: preface for ICCS 2014. Procedia Computer Science 29, pp. 1-7.
  Citation Links
• Proceedings
  J. Zhong, L. Luo, W. Cai, and M. Lees. Automatic Rule Identification for Agent-Based Crowd Models Through Gene Expression Programming. In: AAMAS '14: proceedings of the 2014 International Conference on Autonomous Agents & Multiagent Systems. ISBN 9781450327381. pp. 1125-1132.
  Abstract Citation Links
• Article
  T. I. Jung, F. Vogiatzian, O. Har-Shemesh, C. P. Fitzsimons, and R. Quax. Applying Information Theory to Neuronal Networks: From Theory to Experiments. Entropy 16(11), pp. 5721-5737.
  Abstract Citation Links
• Article
  Y. H. A. Teo, V. Viswanathan, M. Lees, and W. Cai. Analysing the Effectiveness of Wearable Wireless Sensors in Controlling Crowd Disasters. Procedia Computer Science 29, pp. 1590-1599.
  Abstract Citation Links
• PhD Thesis
  E. Mancini. Agent based modeling of viral infections: an investigation across several spatio-temporal scales. Supervised by P. M. A. Sloot.
  Citation Links
• Article
  Q. C. Bui, P. M. A. Sloot, E. M. van Mulligen, and J. A. Kors. A novel feature-based approach to extract drug-drug interactions from biomedical text. Bioinformatics 30(23), pp. 3365-3371.
  Abstract Citation Links
• Article
  C. Tamulonis and J. Kaandorp. A model of filamentous cyanobacteria leading to reticulate pattern formation. Life (Basel) 4(3), pp. 433-456.
  Abstract Citation Links
• Article
  B. Chopard, J. Borgdorff, and A. G. Hoekstra. A framework for multi-scale modelling. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 372(2021), 2013037813.
  Abstract Citation Links
• Article
  D. Botman, E. Röttinger, M. Q. Martindale, J. de Jong, and J. A. Kaandorp. A computational approach towards a gene regulatory network for the developing Nematostella vectensis gut. PLoS ONE 9(7), e103341.
  Abstract Citation Links
• Book
  D. Abramson, M. Lees, V. Krzhizhanovskaya, J. Dongarra, and P. M. A. Sloot. 2014 International Conference on Computational Science.
  Citation Links

2013

• Article
  A. L. Pyayt, I. I. Mokhov, and A. P. Kozionov. Интеллектуальная система мониторинга состояния объектов критической инфраструктуры. Integral 2013(4), pp. 84-86.
  Abstract Citation Links
• Article
  L. Mountrakis, E. Lorenz, and A. G. Hoekstra. Where do the platelets go? A simulation study of fully resolved blood flow through aneurysmal vessels. Interface Focus 3(2), p. 20120089.
  Abstract Citation Links
• Proceedings
  E. R. Dugundji and L. Gulyás. Understanding Emergence in a Fully-Specified Nested Logit Model.
  Citation
• Article
  R. Quax, A. Apolloni, and P. M. A. Sloot. Towards understanding the behavior of physical systems using information theory. The European Physical Journal - Special Topics 222(6), pp. 1389-1401.
  Abstract Citation Links
• Proceedings
  A. V. Yakushev, A. V. Boukhanovsky, and P. M. A. Sloot. Topic Crawler for Social Networks Monitoring. In: Knowledge Engineering and the Semantic Web. ISBN 9783642413605. pp. 214-227.
  Abstract Citation Links
• PhD Thesis
  D. van Dijk. The symphony of gene regulation. Supervised by P. M. A. Sloot and J. A. Kaandorp.
  Abstract Citation Links
• Article
  P. Ramos-Silva, J. Kaandorp, L. Huisman, B. Marie, I. Zanella-Cléon, N. Guichard, D. J. Miller, and F. Marin. The skeletal proteome of the coral Acropora millepora: the evolution of calcification by co-option and domain shuffling. Molecular Biology and evolution 30(9), pp. 2099-2112.
  Abstract Citation Links
• Article
  B. Marie, D. J. Jackson, P. Ramos-Silva, I. Zanella-Cléon, N. Guichard, and F. Marin. The shell-forming proteome of Lottia gigantea reveals both deep conservations and lineage-specific novelties. The FEBS Journal 280(1), pp. 214-232.
  Abstract Citation Links
• Article
  N. Toth, L. Gulyas, R. O. Legendi, P. Duijn, P. M. A. Sloot, and G. Kampis. The importance of centralities in dark network value chains. The European Physical Journal - Special Topics 222(6), pp. 1413-1439.
  Abstract Citation Links
• Article
  R. Quax, A. Apolloni, and P. M. A. Sloot. The diminishing role of hubs in dynamical processes on complex networks. Journal of the Royal Society Interface 10(88), 20130568.
  Abstract Citation Links
• Article
  V. S. Lebanin, V. V. Krzhizhanovskaya, and S. E. Alexandrov. The dependence of the rate constant of the interaction between two excited particles on the excitation energy and temperature. Verification of the model with examples transfer of electronic excitation energy of the argon atom and the nitrogen molecule in the reaction of dissociation of nitrogen atom of argon. Technical Physics Letters .
  Citation
• PhD Thesis
  P. Sequeira dos Ramos Silva. The biocalcification of mollusk shells and coral skeletons: Integrating molecular, proteomics and bioinformatics methods. ISBN 9789810785635. Supervised by P. M. A. Sloot, J. A. Kaandorp, and F. G. Marin.
  Abstract Citation Links
• Article
  T. Ishiyama, S. Rieder, J. Makino, S. Portegies Zwart, D. Groen, K. Nitadori, C. de Laat, S. McMillan, K. Hiraki, and S. Harfst. The Cosmogrid simulation: Statistical properties of small dark matter halos. Astrophysical Journal 767(2), 146.
  Abstract Citation Links
• Article
  I. Bartha, M. Assel, P. M. A. Sloot, M. Zazzi, C. Torti, E. Schülter, A. De Luca, A. Sönnerborg, A. B. Abecasis, K. Van Laethem, A. Rosi, J. Svärd, R. Paredes, D. A. M. C. van de Vijver, A.-M. Vandamme, and V. Müller. Superinfection with drug-resistant HIV is rare and does not contribute substantially to therapy failure in a large European cohort. BMC Infectious Diseases 13, p. 537.
  Abstract Citation Links
• Article
  A. Czaplicka, J. A. Hołyst, and P. M. A. Sloot. Stochastic resonance for information flows on hierarchical networks. The European Physical Journal - Special Topics 222(6), pp. 1335-1345.
  Abstract Citation Links
• MSc Thesis
  J. Hofman. SPVAs: Grid GPU Implementation \& Risk Assessment of Investment Strategies. Supervised by B. D. Kandhai, D. Schrager, and V. Sergeev.
  Citation
• Article
  J. T. I. Tanzil, B. E. Brown, R. P. Dunne, J. N. Lee, J. A. Kaandorp, and P. A. Todd. Regional decline in growth rates of massive Porites corals in Southeast Asia. Global Change Biology 19(10), pp. 3011-3023.
  Abstract Citation Links
• Article
  P. Libin, G. Beheydt, K. Deforche, S. Imbrechts, F. Ferreira, K. Van Laethem, K. Theys, A. P. Carvalho, J. Cavaco-Silva, G. Lapadula, C. Torti, M. Assel, S. Wesner, J. Snoeck, J. Ruelle, A. de Bel, P. Lacor, P. de Munter, E. van Wijngaerden, M. Zazzi, R. Kaiser, A. Ayouba, M. Peeters, T. de Oliveira, L. C. J. Alcantara, Z. Grossman, P. Sloot, D. Otelea, S. Paraschiv, C. Boucher, R. J. Camacho, and A.-M. Vandamme. RegaDB: Community-driven data management and analysis for infectious diseases. Bioinformatics 29(11), pp. 1477-1480.
  Abstract Citation Links
• Article
  L. B. Carey, D. van Dijk, P. M. A. Sloot, J. A. Kaandorp, and E. Segal. Promoter sequence determines the relationship between expression level and noise. PLoS Biology 11(4), e1001528.
  Abstract Citation Links
• Proceedings
  V. Alexandrov, M. Lees, V. Krzhizhanovskaya, J. Dongarra, and P. M. A. Sloot. Proceedings of the International Conference on Computational Science, ICCS 2013. Procedia Computer Science 18.
  Citation Links
• Article
  A. Afanasyeva, S. Ponyaev, and V. Krgiganovskaya. Numerical simulation of synthesis of fullerenes by the arc discharge method. Journal of Physics: Conference Series 461, 012043.
  Abstract Citation Links
• Article
  A. Czaplicka, J. A. Holyst, and P. M. A. Sloot. Noise enhances information transfer in hierarchical networks. Scientific Reports 3, 1223.
  Abstract Citation Links
• Article
  J. Borgdorff, M. Mamonski, B. Bosak, D. Groen, M. Ben Belgacem, K. Kurowski, and A. G. Hoekstra. Multiscale Computing with the Multiscale Modeling Library and Runtime Environment. Procedia Computer Science 18, pp. 1097-1105.
  Abstract Citation Links
• MSc Thesis
  A. M. Abdol. Multi-objective optimization approach to infer Drosophila gene regulatory parameters. Supervised by J. A. Kaandorp and F. R. Jansson.
  Citation
• Article
  H. Tahir, C. Bona-Casas, and A. G. Hoekstra. Modelling the Effect of a Functional Endothelium on the Development of In-Stent Restenosis. PLoS ONE 8(6), e66138.
  Abstract Citation Links
• Article
  A. S. Afanasieva, S. A. Ponyaev, and V. V. Krzhizhanovskaya. Modelling processes in the shock tube experiments with ignition of combustible gas mixtures. Technical Physics Letters .
  Citation Links
• Proceedings
  H. Tahir, C. Bona-Casas, and A. G. Hoekstra. Modelling in-stent restenosis: morphological differences in the tissue patterns based on the origin of endothelium recovery.
  Citation
• Article
  N. Chindapol, J. A. Kaandorp, C. Cronemberger, T. Mass, and A. Genin. Modelling growth and form of the scleractinian coral Pocillopora verrucosa and the influence of hydrodynamics. PLoS Computational Biology 9(1), e1002849.
  Abstract Citation Links
• PhD Thesis
  H. Tahir. Modelling and simulating the dynamics of in-stent restenosis in porcine coronary arteries. Supervised by P. M. A. Sloot and A. G. Hoekstra.
  Abstract Citation Links
• Article
  N. B. Melnikova, V. V. Krzhizhanovskaya, and P. M. A. Sloot. Modeling earthen dikes using real-time sensor data. Journal of Hydrology 496, pp. 154-165.
  Abstract Citation Links
• Chapter
  Vaisagh Viswanathan and Michael Lees. Modeling and analyzing the human cognitive limits for perception in crowd simulation. In: Transactions on Computational Science XVII. ISBN 9783642358401. pp. 51-72.
  Abstract Citation Links
• Article
  N. B. Melnikova, V. V. Krzhizhanovskaya, and P. M. A. Sloot. Modeling Earthen Dike Stability: Sensitivity Analysis and Automatic Calibration of Diffusivities Based on Live Sensor Data. Journal of Hydrology .
  Citation Links
• Chapter
  N. Javaheri, C. M. Cronemberger, and J. A. Kaandorp. Modeling Biosilicification at Subcellular Scales. In: Biomedical Inorganic Polymers. ISBN 9783642410048. pp. 117-141.
  Abstract Citation Links
• Article
  J. A. Kaandorp. Macroscopic modelling of environmental influence on growth and form of sponges and corals using the accretive growth model. ISRN Biomathematics 2013, p. 159170.
  Abstract Citation Links
• Proceedings
  Daniel Zehe, Heiko Aydt, Michael Lees, and Alois Knoll. JavaScript distributed agent based discrete event simulation. In: Proceedings - 17th IEEE/ACM International Symposium on Distributed Simulation and Real Time Applications, DS-RT 2013. ISBN 9780769551388.
  Abstract Citation Links
• Proceedings
  J. Simm, D. Jordan, A. Topple, I. Mokhov, A. Pyayt, T. Abdoun, V. Bennett, J. Broekhuijsen, and R. Meijer. Interpreting sensor measurements in dikes - experiences from UrbanFlood pilot sites. In: Comprehensive Flood Risk Management: research for policy and practice. ISBN 9780203374511 . pp. 81-82.
  Abstract Citation Links
• Book
  V. Alexandrov, M. Lees, V. Krzhizhanovskaya, J. Dongarra, and P. M. A. Sloot. International Conference on Computational Science, ICCS 2013: Barcelona, Spain, June 5- June 7, 2013.
  Citation Links
• Article
  L. Luo, H. Yin, W. Cai, M. Lees, and S. Zhou. Interactive scenario generation for mission-based virtual training. Computer Animation and Virtual Worlds 24(3-4), pp. 345-354.
  Abstract Citation Links
• Proceedings
  A. P. Kozionov, A. L. Pyayt, and V. T. Kusherbaeva. Intelligent signal processing for dike health monitoring. In: Automation & control: proceedings of the International Conference of Young Scientists, St. Petersburg, Russia, 21-22 November 2013. ISBN 9785742241645. pp. 188-193.
  Citation Links
• PhD Thesis
  R. Quax. Information processing in complex networks. Supervised by P. M. A. Sloot.
  Abstract Citation Links
• Article
  R. Quax, D. Kandhai, and P. M. A. Sloot. Information dissipation as an early-warning signal for the Lehman Brothers collapse in financial time series. Scientific Reports 3, 1898.
  Abstract Citation Links
• Article
  R. Quax, D. A. M. C. van de Vijver, D. Frentz, and P. M. A. Sloot. Inferring epidemiological parameters from phylogenetic information for the HIV-1 epidemic among MSM. The European Physical Journal - Special Topics 222(6), pp. 1347-1358.
  Abstract Citation Links
• Proceedings
  H. Tahir, C. Bona-Casas, and A. G. Hoekstra. In-stent restenosis patterns based on the origin of endothelium recovery.
  Citation Links
• MSc Thesis
  J. Hofmann. Heterogeneous Multiscale Simulations of Blood Flow. Supervised by A. G. Hoekstra and E. Lorenz.
  Citation Links
• MSc Thesis
  A. Theiakos. GPU-based hedging of a mortgage portfolio using Monte-Carlo and finite difference methods. Supervised by B. D. Kandhai, J. Tas, and H. van der Lem.
  Citation Links
• Article
  J. Borgdorff, J.-L. Falcone, E. Lorenz, C. Bona-Casas, B. Chopard, and A. G. Hoekstra. Foundations of distributed multiscale computing: formalization, specification, and analysis. Journal of Parallel and Distributed Computing 73(4), pp. 465-483.
  Abstract Citation Links
• MSc Thesis
  S. van Geldermalsen. FlowCL -- Declarative dataflow API for heterogeneous platform computing. Supervised by S. Olabarriaga, A. S. Z. Belloum, and H. Marquering.
  Citation Links
• Chapter
  B. E. Pengel, V. V. Krzhizhanovskaya, N. B. Melnikova, G. S. Shirshov, A. R. Koelewijn, A. L. Pyayt, and I. I. Mokhov. Flood early warning system: sensors and internet. In: Floods: from risk to opportunity. ISBN 9781907161353. pp. 445-453.
  Abstract Citation Links
• Article
  D. Groen, J. Borgdorff, C. Bona-Casas, J. Hetherington, R. W. Nash, S. J. Zasada, I. Saverchenko, M. Mamonski, K. Kurowski, M. O. Bernabeu, A. G. Hoekstra, and P. V. Coveney. Flexible composition and execution of high performance, high fidelity multiscale biomedical simulations. Interface Focus 3(2), 20120087.
  Abstract Citation Links
• Proceedings
  C. Bona-Casas, J. Borgdorff, H. Tahir, and A. G. Hoekstra. First results on a 3D model for in-stent restenosis.
  Citation Links
• MSc Thesis
  C. Chen. Explicit modelling of membrane-bound structures in the cellular Potts model. Supervised by R. M. H. Merks and J. A. Kaandorp.
  Citation
• MSc Thesis
  L. J. Dijkstra. Essays in Computational Science. Supervised by P. M. A. Sloot.
  Citation
• PhD Thesis
  J. T. I. Tanzil. Environmental controls of coral growth: Data driven multi-scale analyses of rates and patterns of growth in massive Porites corals around the Thai-Malay Peninsula. ISBN 9789810783372. Supervised by P. M. A. Sloot and J. A. Kaandorp.
  Abstract Citation Links
• Proceedings
  M. Wagner, W. Cai, and M. H. Lees. Emergence by strategy: Flocking boids and their fitness in relation to model complexity. In: Proceedings of the 2013 Winter Simulation Conference. ISBN 9781479939503, 9781479920778. pp. 1479-1490.
  Abstract Citation Links
• Article
  V. V. Krzhizhanovskaya, N. B. Melnikova, A. M. Chirkin, S. V. Ivanov, A. V. Boukhanovsky, and P. M. A. Sloot. Distributed Simulation of City Inundation by Coupled Surface and Subsurface Porous Flow for Urban Flood Decision Support System. Procedia Computer Science 18, pp. 1046-1056.
  Abstract Citation Links
• Article
  M. Ben Belgacem, B. Chopard, J. Borgdorff, M. Mamoński, K. Rycerz, and D. Harezlak. Distributed Multiscale Computations using the MAPPER framework. Procedia Computer Science 18, pp. 1106-1115.
  Abstract Citation Links
• Article
  B. E. Nichols, C. A. B. Boucher, J. H. van Dijk, P. E. Thuma, J. L. Nouwen, R. Baltussen, J. van de Wijgert, P. M. A. Sloot, and D. A. M. C. van de Vijver. Cost-effectiveness of Pre-Exposure Prophylaxis (PrEP) in preventing HIV-1 infections in rural Zambia: a modeling study. PLoS ONE 8(3), e59549.
  Abstract Citation Links
• Article
  V. Alexandrov, M. Lees, V. Krzhizhanovskaya, J. Dongarra, and P. M. A. Sloot. Computation at the Frontiers of Science, preface for ICCS 2013. Procedia Computer Science 18, pp. 1-9.
  Citation Links
• PhD Thesis
  N. Zarrabi. Complex networks and agent-based models of HIV epidemic. Supervised by P. M. A. Sloot.
  Abstract Citation Links
• Article
  N. Zarrabi, M. C. F. Prosperi, R. G. Belleman, S. Di Giambenedetto, M. Fabbiani, A. De Luca, and P. M. A. Sloot. Combining social and genetic networks to study HIV transmission in mixing risk groups. The European Physical Journal - Special Topics 222(6), pp. 1377-1387.
  Abstract Citation Links
• PhD Thesis
  C. V. T. Tamulonis. Cell-based models. Supervised by P. M. A. Sloot and J. A. Kaandorp.
  Citation Links
• Article
  P. Ramos-Silva, F. Marin, J. Kaandorp, and B. Marie. Biomineralization toolkit: the importance of sample cleaning prior to the characterization of biomineral proteomes. Proceedings of the National Academy of Sciences of the United States of America 110(24), pp. E2144-E2146.
  Citation Links
• Article
  A. Adamatzky, M. Lees, and P. Sloot. Bio-development of motorway networks in the Netherlands: a slime mould approach. Advances in Complex Systems 16(02n03), 1250034.
  Abstract Citation Links
• Article
  A. Adamatzky, S. Akl, R. Alonso-Sanz, W. van Dessel, Z. Ibrahim, A. Ilachinski, J. Jones, A. V. D. M. Kayem, G. J. Martínez, P. de Oliveira, M. Prokopenko, T. Schubert, P. Sloot, E. Strano, and X.-S. Yang. Are motorways rational from slime mould's point of view?. International Journal of Parallel, Emergent and Distributed Systems 28(3), pp. 230-248.
  Abstract Citation Links
• Proceedings
  C. Bona-Casas, J. Borgdorff, H. Tahir, and A. G. Hoekstra. An off-lattice 3D model for in-stent restenosis.
  Citation
• Article
  A. L. Pyayt, A. P. Kozionov, I. I. Mokhov, B. Lang, V. V. Krzhizhanovskaya, and P. M. A. Sloot. An Approach for Real-time Levee Health Monitoring Using Signal Processing Methods. Procedia Computer Science 18, pp. 2357-2366.
  Abstract Citation Links
• Article
  P. M. A. Sloot, G. Kampis, and L. Gulyás. Advances in dynamic temporal networks: understanding the temporal dynamics of complex adaptive networks. The European Physical Journal - Special Topics 222(6), pp. 1287-1293.
  Abstract Citation Links
• Proceedings
  Francesco Pennella, Piergiorgio Gentile, Marco A. Deriu, Diego Gallo, Alessandro Schiavi, Gianluca Ciardelli, Eric Lorenz, Alfons G. Hoekstra, Alberto Audenino, and Umberto Morbiducci. A virtual test bench to study transport phenomena in 3D porous scaffolds using lattice boltzmann simulations. In: ASME 2013 Summer Bioengineering Conference, SBC 2013. ISBN 9780791855607.
  Citation Links
• Article
  A. Bankhead, E. Mancini, A. C. Sims, R. S. Baric, S. McWeeney, and P. M. A. Sloot. A simulation framework to investigate in vitro viral infection dynamics. Journal of Computational Science 4(3), pp. 127-134.
  Abstract Citation Links
• Proceedings
  N. Hu, M. H. Lees, and S. Zhou. A pattern-based modeling framework for simulating human-like pedestrian steering behaviors. In: VRST 2013 : proceedings. ISBN 9781450323796. pp. 179-188.
  Abstract Citation Links
• Proceedings
  J. Xiao, H. Aydt, M. Lees, and A. Knoll. A partition based match making algorithm for taxi sharing. In: 2013 16th International IEEE Conference on Intelligent Transportation Systems - (ITSC). ISBN 9781479929146, 9781479929139. pp. 2393-2400.
  Abstract Citation Links
• Proceedings
  H. Aydt, Y. Xu, M. Lees, and A. Knoll. A Multi-threaded Execution Model for the Agent-based SEMSim Traffic Simulation. In: AsiaSim 2013. ISBN 9783642450372. pp. 1-12.
  Abstract Citation Links
• MSc Thesis
  J. Tyree. A Linear Boundary for the Heston Model With Parallel ADI Finite Differencing on GPUs. Supervised by B. D. Kandhai.
  Citation Links

2012

• Proceedings
  M. A. Prosnikov and V. V. Krzhizhanovskaya. Обзор основых методов и программ для моделирования наноразмерных систем. In: ХLI Неделя науки СПбГПУ . 6, pp. 128-130.
  Citation Links
• Proceedings
  V. S. Lebanin and V. V. Krzhizhanovskaya. Модель кинетики реакции двух нейтральных частиц в газе и плазме. In: ХLI Неделя науки СПбГПУ . 6, pp. 146-149.
  Citation Links
• Proceedings
  S. A. Konakov and V. V. Krzhizhanovskaya. Моделирование механизма образования силаммониевых радикалов в технологии плазмохимического осаждения нитрида кремния азота с малым содержанием. In: ХLI Неделя науки СПбГПУ . 6, pp. 132-135.
  Citation Links
• Article
  G. Qiu, D. Kandhai, N. F. Johnson, and P. M. A. Sloot. Understanding complex dynamics in derivatives finance: why do options markets smile?. Advances in Complex Systems 15(5), 1250050.
  Abstract Citation Links
• Article
  J. U. Hammel, M. V. Filatov, J. Herzen, F. Beckmann, J. A. Kaandorp, and M. Nickel. The non-hierarchical, non-uniformly branching topology of a leuconoid sponge aquiferous system revealed by 3D reconstruction and morphometrics using corrosion casting and X-ray microtomography. Acta Zoologica 93(2), pp. 160-170.
  Abstract Citation Links
• Article
  D. Botman and J. A. Kaandorp. Spatial gene expression quantification: a tool for analysis of in situ hybridizations in sea anemone Nematostella vectensis. BMC Research Notes 5, p. 555.
  Abstract Citation Links

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