Publications of the CSL group

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2010

• Article
  N. Zarrabi, E. Mancini, J. Tay, S. Shahand, and P. M. A. Sloot. Modeling HIV-1 intracellular replication: two simulation approaches. Procedia Computer Science 1(1), pp. 555-564.
  Abstract Citation Links
• Proceedings
  M. V. Baryshnikova and V. V. Krzhizhanovskaya. Model development of a PECVD reactor for titanium dioxide film deposition [in Russian]. In: XXXIX неделя науки СпбГПУ. pp. 148-150.
  Citation
• Article
  Alfons Hoekstra, Li Shi Luo, and Manfred Krafczyk. Mesoscopic methods in engineering and science. Computers & Mathematics with Applications 59(7), pp. 2139-2140.
  Citation Links
• Article
  J.-L. Falcone, B. Chopard, and A. Hoekstra. MML: towards a Multiscale Modeling Language. Procedia Computer Science 1(1), pp. 819-826.
  Abstract Citation Links
• Chapter
  A. G. Hoekstra, J. Kroc, and P. M. A. Sloot. Introduction to modeling of complex systems using cellular automata. In: Simulating complex systems by cellular automata. ISBN 9783642122033. pp. 1-16.
  Abstract Citation Links
• Book
  P. M. A. Sloot, G. D. van Albada, and J. Dongarra. International Conference on Computational Science, ICCS 2010.
  Citation Links
• Article
  S. Jaeger, G. Ertaylan, D. van Dijk, U. Leser, and P. Sloot. Inference of surface membrane factors of HIV-1 infection through functional interaction networks. PLoS ONE 5(10), p. e13139.
  Abstract Citation Links
• Article
  D. van Dijk, P. M. A. Sloot, J. C. Tay, and M. C. Schut. Individual-based simulation of sexual selection: A quantitative genetic approach. Procedia Computer Science 1(1), pp. 2003-2011.
  Abstract Citation Links
• Article
  D. van Dijk, G. Ertaylan, C. A. B. Boucher, and P. M. A. Sloot. Identifying potential survival strategies of HIV-1 through virus-host protein interaction networks. BMC Systems Biology 4, p. 96.
  Abstract Citation Links
• PhD Thesis
  S. Murtaza. High performance reconfigurable computing with cellular automata. Supervised by P. M. A. Sloot and A. G. Hoekstra.
  Citation
• PhD Thesis
  D. J. Groen. High performance N-body simulation on computational grids. Supervised by S. F. Portegies Zwart, P. M. A. Sloot, and E. P. J. van den Heuvel.
  Abstract Citation
• PhD Thesis
  Y. Fomekong Nanfack. Genetic regulatory networks inference : modeling, parameters estimation & model validation. Supervised by P. M. A. Sloot and J. A. Kaandorp.
  Citation
• Article
  Q. C. Bui, B. Ó Nualláin, C. A. Boucher, and P. M. A. Sloot. Extracting causal relations on HIV drug resistance from literature. BMC Bioinformatics 11, p. 101.
  Abstract Citation Links
• Article
  E. Zudilova-Seinstra, B. van Schooten, A. Suinesiaputra, R. van der Geest, B. van Dijk, J. Reiber, and P. Sloot. Exploring individual user differences in the 2D/3D interaction with medical image data. Virtual Reality 14(2), pp. 105-118.
  Abstract Citation Links
• Article
  A. Sottoriva, P. M. A. Sloot, J. P. Medema, and L. Vermeulen. Exploring cancer stem cell niche directed tumor growth. Cell Cycle 9(8), pp. 1472-1479.
  Abstract Citation Links
• Article
  E. V. Zudilova-Seinstra, P. J. H. de Koning, A. Suinesiaputra, B. W. van Schooten, R. J. van der Geest, J. H. C. Reiber, and P. M. A. Sloot. Evaluation of 2D and 3D glove input applied to medical image analysis. International Journal of Human-Computer Studies 68(6), pp. 355-369.
  Abstract Citation Links
• Book
  J. A. Kaandorp, E. Meesters, R. Osinga, J. Verreth, and T. Wijgerde. Euro ISRS symposium 2010: reefs in a changing environment: book of abstracts.
  Citation
• Proceedings
  V. S. Lebanin and V. Krzhizhanovskaya. Development of a software package for processing the photoemission spectra of high-frequency nitrogen discharge, obtained from the MDR-12 monochromator [in Russian]. In: XXXIX неделя науки СпбГПУ. 6, pp. 112-114.
  Citation
• Proceedings
  I. S. Kiseleva and V. Krzhizhanovskaya. Developing a model of silicon nitride film deposition in a remote inductively coupled low-pressure RF plasma discharge [in Russian]. In: XXXIX неделя науки СпбГПУ. 6, pp. 116-117.
  Citation
• Article
  S. Koulouzis, E. Zudilova-Seinstra, and A. Belloum. Data transport between visualization web services for medical image analysis. Procedia Computer Science 1(1), pp. 1721-1730.
  Abstract Citation Links
• Proceedings
  D. Ivanov, I. Marinov, Y. Gorbachev, A. Smirnov, and V. Krzhizhanovskaya. Computer simulation of laser annealing of a nanostructured surface. In: Proceedings of the ASME 2009 International Design Engineering Technical Conferences & Computers and Information in Engineering Conference (IDETC/CIE 2009), San Diego, CA, USA: Volume 2: 29th Computers and Information in Engineering Conference. ISBN 9780791848999. pp. 1197-1198 (DETC2009-87087).
  Abstract Citation Links
• Article
  P. M. A. Sloot. Computational science: A kaleidoscopic view into science. Journal of Computational Science 1(4), p. 189.
  Citation Links
• Article
  S. Mei, P. M. A. Sloot, R. Quax, Y. Zhu, and W. Wang. Complex agent networks explaining the HIV epidemic among homosexual men in Amsterdam. Mathematics and Computers in Simulation 80(5), pp. 1018-1030.
  Abstract Citation Links
• Chapter
  A. G. Hoekstra, A. Caiazzo, E. Lorenz, J.-L. Falcone, and B. Chopard. Complex Automata: Multi-scale Modeling with Coupled Cellular Automata. In: Simulating complex systems by cellular automata. ISBN 9783642122026. pp. 29-57.
  Abstract Citation Links
• Article
  D. Frentz, C. A. B. Boucher, M. Assel, A. De Luca, M. Fabbiani, F. Incardona, P. Libin, N. Manca, V. Müller, B. Ó Nualláin, R. Paredes, M. Prosperi, E. Quiros-Roldan, L. Ruiz, P. M. A. Sloot, C. Torti, A.-M. Vandamme, K. Van Laethem, M. Zazzi, and D. A. M. C. van de Vijver. Comparison of HIV-1 genotypic resistance test interpretation systems in predicting virological outcomes over time. PLoS ONE 5(7), p. e11505.
  Abstract Citation Links
• Article
  A. Sottoriva, J. J. C. Verhoeff, T. Borovski, S. K. McWeeney, L. Naumov, J. P. Medema, P. M. A. Sloot, and L. Vermeulen. Cancer stem cell tumor model reveals invasive morphology and increased phenotypical heterogeneity. Cancer Research 70(1), pp. 46-56.
  Abstract Citation Links
• MSc Thesis
  T. Wood. Applications of GPUs in Computational Finance. Supervised by R. G. Belleman and B. D. Kandhai.
  Citation Links
• Article
  M. A. Yurkin, M. Min, and A. G. Hoekstra. Application of the discrete dipole approximation to very large refractive indices: Filtered coupled dipoles revived. Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 82(3), p. 036703.
  Abstract Citation Links
• Article
  M. C. F. Prosperi, M. Rosen-Zvi, A. Altman, M. Zazzi, S. Di Giambenedetto, R. Kaiser, E. Schülter, D. Struck, P. Sloot, D. A. van de Vijver, A.-M. Vandamme, and A. Sönnerborg. Antiretroviral therapy optimisation without genotype resistance testing: a perspective on treatment history based models. PLoS ONE 5(10), p. e13753.
  Abstract Citation Links
• Proceedings
  A. S. Afanasieva and V. Krzhizhanovskaya. Advantages of the OpenFOAM open-source software package for numerical simulation of gas and plasma dynamics problems [In Russian]. In: XXXIX неделя науки СпбГПУ. 6, pp. 114-116.
  Citation
• Book
  P. Bellavista, R.-S. Chang, H.-C. Chao, S.-F. Lin, and P. M. A. Sloot. Advances in Grid and Pervasive Computing: 5th International Conference, GPC 2010, Hualien, Taiwan, May 10-13, 2010: Proceedings. ISBN 9783642130663.
  Abstract Citation Links
• Article
  M. A. Yurkin, D. de Kanter, and A. G. Hoekstra. Accuracy of the discrete dipole approximation for simulation of optical properties of gold nanoparticles. Journal of Nanophotonics 4(1), p. 041585.
  Abstract Citation Links
• Article
  D. Groen, S. Rieder, P. Grosso, C. de Laat, and S. Portegies Zwart. A platform independent communication library for distributed computing. Procedia Computer Science 1(1), pp. 2693-2700.
  Abstract Citation Links
• Proceedings
  M. Gerhards, A. Belloum, F. Berretz, V. Sander, and S. Skorupa. A history-tracing XML-based provenance framework for workflows. In: 2010 5th Workshop on Workflows in Support of Large-Scale Science (WORKS). ISBN 9781424489909.
  Abstract Citation Links
• Article
  M. V. Filatov, J. A. Kaandorp, M. Postma, R. van Liere, K. J. Kruszyński, M. J. A. Vermeij, G. J. Streekstra, and R. P. M. Bak. A comparison between coral colonies of the genus Madracis and simulated forms. Proceedings of the Royal Society B-Biological Sciences 277(1700), pp. 3555-3561.
  Abstract Citation Links
• MSc Thesis
  J. Daub. A cell-based model of extracellular-matrix-guided endothelial cell migration during angiogenesis. Supervised by R. M. H. Merks and J. A. Kaandorp.
  Citation Links
• PhD Thesis
  J. J. van der Ham. A Semantic Model for Complex Computer Networks: The Network Description Language. ISBN 978-90-814160-2-3. Supervised by P. M. A. Sloot and C. T. A. M. de Laat.
  Citation Links

2009

• Article
  N. Graf, A. Hoppe, E. Georgiadi, R. Belleman, C. Desmedt, D. Dionysiou, M. Erdt, J. Jacques, E. Kolokotroni, A. Lunzer, M. Tsiknakis, and G. Stamatakos. ‘In silico' oncology for clinical decision making in the context of nephroblastoma. Klinische Pädiatrie 221(3), pp. 141-149.
  Abstract Citation Links
• Chapter
  M. Bubak, M. Malawski, T. Gubala, M. Kasztelnik, P. Nowakowski, D. Harezlak, T. Bartynski, J. Kocot, E. Ciepiela, W. Funika, D. Krol, B. Balis, M. Assel, and A. Tirado-Ramos. Virtual Laboratory for Collaborative Applications. In: Handbook of research on computational grid technologies for life sciences, biomedicine, and healthcare. ISBN 9781605663746. pp. 531-551.
  Citation Links
• Article
  R. J. Allison, S. P. Goodwin, R. J. Parker, S. F. Portegies Zwart, R. de Grijs, and M. B. N. Kouwenhoven. Using the minimum spanning tree to trace mass segregation. Monthly Notices of the Royal Astronomical Society 395(3), pp. 1449-1454.
  Abstract Citation Links
• Book
  E. Zudilova-Seinstra, T. Adriaansen, and R. van Liere. Trends in interactive visualization: State-of-the-art survey. ISBN 9781848002685.
  Abstract Citation Links
• Proceedings
  A. Caiazzo, D. Evans, J.-L. Falcone, J. Hegewald, E. Lorenz, B. Stahl, D. Wang, J. Bernsdorf, B. Chopard, J. Gunn, R. Hose, M. Krafczyk, P. Lawford, R. Smallwood, D. Walker, and A. G. Hoekstra. Towards a Complex Automata multiscale model of in-stent restenosis. In: Computational Science – ICCS 2009. ISBN 9783642019708. I, pp. 705-714.
  Abstract Citation Links
• Proceedings
  G. de Marchi, F. Paresce, and S. F. Portegies Zwart. Time Evolution of the Stellar Mass Function of Galactic Clusters. In: American Astronomical Society Meeting #213, #442.06 Abstracts. American Astronomical Society Meeting Abstracts 41, p. 320.
  Citation Links
• Proceedings
  J. Meizner, M. Malawski, S. Naqvi, and M. Bubak. Threat model for MOCCA component environment. In: Cracow'08 Grid Workshop: October 13-15, 2008 Cracow, Poland: proceedings. ISBN 9788361433002. pp. 94-102.
  Citation
• Proceedings
  A. Tirado-Ramos and A. Shiflet. Third Workshop on Teaching Computational Science (WTCS 2009). In: Computational Science – ICCS 2009. ISBN 9783642019739. II, pp. 3-4.
  Abstract Citation Links
• Article
  V. V. Korkhov, J. T. Moscicki, and V. V. Krzhizhanovskaya. The user-level scheduling of divisible load parallel applications with resource selection and adaptive workload balancing on the Grid. IEEE Systems Journal 3(1), pp. 121-130.
  Abstract Citation Links
• Article
  S. F. Portegies Zwart. The lost siblings of the Sun. Astrophysical Journal Letters 696(1), pp. L13-L16.
  Abstract Citation Links
• Article
  J. C. A. Miller-Jones, P. G. Jonker, G. Nelemans, S. Portegies Zwart, V. Dhawan, W. Brisken, E. Gallo, and M. P. Rupen. The formation of the black hole in the X-ray binary system V404 Cyg. Monthly Notices of the Royal Astronomical Society 394(3), pp. 1440-1448.
  Abstract Citation Links
• Article
  E. Glebbeek, E. Gaburov, S. E. de Mink, O. R. Pols, and S. F. Portegies Zwart. The evolution of runaway stellar collision products. Astronomy & Astrophysics 497(1), pp. 255-264.
  Abstract Citation Links
• Report
  G. S. Cook, R. G. Belleman, M. Scarpa, and C. T. A. M. de Laat. The Cook Report on Internet Protocol on WiVR: a Window into Virtual Reality.
  Citation
• Report
  G. S. Cook, R. G. Belleman, R. J. Strijkers, M. L. Cristea, R. J. Meijer, and C. T. A. M. de Laat. The Cook Report on Internet Protocol on Interactive Networks (A User Interface for Appliction Owned Lightpath Networks).
  Citation
• Article
  M. Ashyraliyev, Y. Fomekong-Nanfack, J. A. Kaandorp, and J. G. Blom. Systems biology: parameter estimation for biochemical models. The FEBS Journal 276(4), pp. 886-902.
  Abstract Citation Links
• Proceedings
  J. Kitowski, M. Tura\la, K. Wiatr, M. T. Bubak, A. Kusznir, J. Niwicki, T. Szepieniec, M. Radecki, A. Ozieblo, Z. Mosurska, A. Szymańska, K. Krawentek, and et al.. Structure and status of National Grid Initiative in Poland. In: Cracow'08 Grid Workshop: October 13-15, 2008 Cracow, Poland: proceedings. ISBN 978-83-61433-00-2. pp. 39-51.
  Citation
• PhD Thesis
  J. Vidal Rodriguez. Stochasticity in signal transduction pathways. ISBN 9789090247397. Supervised by P. M. A. Sloot and J. A. Kaandorp.
  Citation
• Article
  V. Krzhizhanovskaya. Special section: Simulation of Multiphysics Multiscale Systems: Going Nano. Preface. International Journal for Multiscale Computational Engineering 7(1), pp. vii-viii.
  Citation Links
• Article
  L. Smarr, M. Brown, and C. de Laat. Special section: OptIPlanet - The OptIPuter global collaboratory. Future Generation Computer Systems 25(2), pp. 109-113.
  Abstract Citation Links
• Article
  L. Axner, A. G. Hoekstra, A. Jeays, P. Lawford, R. Hose, and P. M. A. Sloot. Simulations of time harmonic blood flow in the Mesenteric artery: comparing finite element and lattice Boltzmann methods. BioMedical Engineering OnLine 8, p. 23.
  Abstract Citation Links
• Proceedings
  V. V. Krzhizhanovskaya and V. V. Korkhov. Simulation of plasma chemical processes on heterogeneous Grid resourses with adaptive load balancing for parallel solvers (Моделирование плазмохимических процессов на гетерогенных ресурсах Grid с адаптивной балансировкой нагрузки для параллельных солверов). In: Proceedings of the all-Russian supercomputer conference 'Scientific services on the Internet: Scalability, parallelism, efficiency'. ISBN 9785211056978. pp. 351-352.
  Citation Links
• Other: misc
  V. V. Krzhizhanovskaya. Simulation of Multiphysics Multiscale Systems: Going Nano. International Journal for Multiscale Computational Engineering 7(1).
  Citation Links
• Other: misc
  V. V. Krzhizhanovskaya. Simulation of Multiphysics Multiscale Systems: Going Nano. International Journal for Multiscale Computational Engineering, Special Section 7(1), pp. vii-viii.
  Citation Links
• Proceedings
  V. V. Krzhizhanovskaya. Simulation of Multiphysics Multiscale Systems, 6th International Workshop. In: Computational Science – ICCS 2009. ISBN 9783642019708. I, pp. 653-654.
  Abstract Citation Links
• Proceedings
  R. Quax, D. A. Bader, and P. M. A. Sloot. Simulating individual-based models of epidemics in hierarchical networks. In: Computational Science – ICCS 2009. ISBN 9783642019708. I, pp. 725-734.
  Abstract Citation Links
• Article
  J. Cui, J. A. Kaandorp, O. O. Ositelu, V. Beaudry, A. Knight, Y. F. Nanfack, and K. W. Cunningham. Simulating calcium influx and free calcium concentrations in yeast. Cell Calcium 45(2), pp. 123-132.
  Abstract Citation Links
• Chapter
  T. Gubala, M. Bubak, and P. M. A. Sloot. Semantic Integration for Research Environments. In: Handbook of research on computational grid technologies for life sciences, biomedicine, and healthcare. ISBN 9781605663746. pp. 514-530.
  Citation Links
• Article
  E. Gaburov, S. Harfst, and S. Portegies Zwart. SAPPORO: A way to turn your graphics cards into a GRAPE-6. New Astronomy 14(7), pp. 630-637.
  Abstract Citation Links
• Proceedings
  P. Bar, C. Coti, D. Groen, T. Herault, V. Kravtsov, A Schuster, and M. Swain. Running parallel applications with topology-aware grid middleware. In: Proceedings of the 2009 Fifth IEEE International Conference on e-Science. ISBN 9780769538778. pp. 292-299.
  Abstract Citation Links
• Chapter
  E. V. Zudilova-Seinstra, T. Adriaansen, and R. van Liere. Overview of interactive visualization. In: Trends in interactive visualization. ISBN 9781848002685. pp. 3-15.
  Abstract Citation Links
• Proceedings
  D. Groen, S. Harfst, and S. Portegies Zwart. On the origin of grid species: The living application. In: Computational Science – ICCS 2009. ISBN 9783642019708. I, pp. 205-212.
  Abstract Citation Links
• PhD Thesis
  S. S. Msanjila. On inter-organizational trust engineering in networked collaborations: modeling and management of rational trust. ISBN 978-90-5776-196-6. Supervised by P. M. A. Sloot and H. Afsarmanesh.
  Citation Links
• Proceedings
  V. Krzhizhanovskaya. Multi-model multi-scale simulation of complex plasma chemical processes. In: EUCASS Aerospace Thematic Workshop on Fundamentals of Aerodynamic-Flow and Combustion Control by Plasmas, Les Houches, France.
  Citation
• MSc Thesis
  N. Zarrabi. Modeling and Simulation of HIV-1 Intracellular Replication. Supervised by P. M. A. Sloot.
  Citation Links
• Proceedings
  M. V. Baryshnikova and V. V. Krzhizhanovskaya. Model development of a PECVD reactor for titanium dioxide film deposition [in Russian]. In: International Conference "38th Science Week". pp. 56-57.
  Citation
• Chapter
  M. Postma and P. J. M. van Haastert. Mathematics of experimentally generated chemoattractant gradients. In: Chemotaxis: methods and protocols. ISBN 9781607611974. pp. 473-488.
  Citation Links
• PhD Thesis
  J. Cui. Mathematical modeling of metal ion homeostasis and signaling systems. ISBN 9789088910883. Supervised by P. M. A. Sloot and J. A. Kaandorp.
  Citation
• Article
  E. Lorenz, A. G. Hoekstra, and A. Caiazzo. Lees-Edwards boundary conditions for lattice Boltzmann suspension simulations. Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 79(3), p. 036706.
  Abstract Citation Links
• Article
  D. I. Strokotov, M. A. Yurkin, K. V. Gilev, D. R. van Bockstaele, A. G. Hoekstra, N. B. Rubtsov, and V. P. Maltsev. Is there a difference between T- and B-lymphocyte morphology?. Journal of Biomedical Optics 14(6), p. 064036.
  Abstract Citation Links
• Proceedings
  R. Strijkers, L. Muller, M. Cristea, R. Belleman, C. de Laat, P. Sloot, and R. Meijer. Interactive control over a programmable computer network using a multi-touch surface. In: Computational Science – ICCS 2009. ISBN 9783642019739. II, pp. 719-728.
  Abstract Citation Links
• MSc Thesis
  A. Z. \"Ozsoy. Interactive Visualization of Large Medical Datasets on the Grid. Supervised by R. G. Belleman.
  Citation
• MSc Thesis
  F. I. Rusadi. Interactive Visualization of Graphs on Multiple Levels of Detail Using a Direct-Touch Interactive Graphics Device. Supervised by R. G. Belleman.
  Citation Links
• Proceedings
  R. J. Strijkers, L. Y. L. Muller, M. L. Cristea, R. G. Belleman, C. T. A. M. de Laat, P. M. A. Sloot, and R. J. Meijer. Interactive Control over a Programmable Computer Network Using a Multi-touch Surface. In: Computational Science - ICCS 2009: 9th International Conference, Baton Rouge, LA, USA, Proceedings, Part II. ISBN 978-3-642-01972-2. Lecture Notes in Computer Science 5545, pp. 719-728.
  Citation Links
• Proceedings
  V. Krzhizhanovskaya and S. Ryaboshuk. Information technologies and software packages for education of specialists in materials science [In Russian]. In: Proceedings of the Third International Conference on Information Technologies in Education, Science and Industry (Serpuhov, Russia): Part I. pp. 285-287.
  Abstract Citation
• Article
  Y. Fomekong-Nanfack, M. Postma, and J. A. Kaandorp. Inferring Drosophila gap gene regulatory network: Pattern analysis of simulated gene expression profiles and stability analysis. BMC Research Notes 2, p. 256.
  Abstract Citation Links
• Article
  Y. Fomekong-Nanfack, M. Postma, and J. A. Kaandorp. Inferring Drosophila gap gene regulatory network: A parameter sensitivity and perturbation analysis. BMC Systems Biology 3, p. 94.
  Abstract Citation Links
• Proceedings
  A. Suinesiaputra, P. J. de Koning, E. V. Zudilova-Seinstra, J. H. C. Reiber, and R. J. van der Geest. In vivo validations of 3D tubular NURBS fitting model applied on severe stenotic and high curvature MRA of carotid arteries. In: ESMRMB Congress.
  Citation
• PhD Thesis
  V. V. Korkhov. Hierarchical resource management in grid computing. ISBN 9789057761898. Supervised by P. M. A. Sloot and A. S. Z. Belloum.
  Citation
• Article
  P. M. A. Sloot, P. V. Coveney, G. Ertaylan, V. Müller, C. A. Boucher, and M. Bubak. HIV decision support: From molecule to man. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 367(1898), pp. 2691-2703.
  Abstract Citation Links
• Article
  A. Bossenbroek, A. Tirado-Ramos, and P. M. A. Sloot. Grid resource allocation by means of option contracts. IEEE Systems Journal 3(1), pp. 49-64.
  Abstract Citation Links
• PhD Thesis
  F. Dijkstra. Framework for path finding in multi-layer transport networks. ISBN 978-90-814160-1-6. Supervised by P. M. A. Sloot and C. T. A. M. de Laat.
  Citation Links
• Article
  M. B. N. Kouwenhoven, A. G. A. Brown, S. P. Goodwin, S. F. Portegies Zwart, and L. Kaper. Exploring the consequences of pairing algorithms for binary stars. Astronomy & Astrophysics 493(3), pp. 979-1016.
  Abstract Citation Links
• Proceedings
  E. V. Zudilova-Seinstra, P. M. A. Sloot, P. J. H. de Koning, A. Suinesiaputra, R. J. van der Geest, and J. H. C. Reiber. Exploring 2D/3D input techniques for medical image analysis. In: International Conference on Information Visualisation, track Biomedical Visualization (MediViz09), Barcelona, Spain. ISBN 9780769537344. pp. 147-152.
  Abstract Citation Links
• Proceedings
  B. W. van Schooten, E. M. A. G. van Dijk, E. V. Zudilova-Seinstra, P. J. H. de Koning, and J. H. C. Reiber. Evaluating visualisation and navigation techniques for interpretation of MRA data. In: GRAPP 2009. ISBN 9789898111678. pp. 405-408.
  Abstract Citation Links
• Proceedings
  B. W. van Schooten, E. M. A. G. van Dijk, E. V. Zudilova-Seinstra, P. J. H. de Koning, and J. H. C. Reiber. Evaluating Visualization and Navigation Techniques for Interpretation of MRA Data. In: International Conference on Computer Graphics Theory and Applications (GRAPP 2009). pp. 405-408.
  Citation
• Proceedings
  T. Bartyński, M. Bubak, T. Gubała, D. Harężlak, M. Kasztelnik, J. Kocot, and P. Nowakowski. Environment for collaborative e-science applications: CGW08 tutorial. In: Cracow'08 Grid Workshop: October 13-15, 2008 Cracow, Poland: proceedings. ISBN 9788361433002. pp. 58-60.
  Citation
• Proceedings
  G. S. Shirshov and V. V. Krzhizhanovskaya. Developing a model of processes in a shock tube with ignition of combustible gas mixtures [in Russian]. In: International Conference "38th Science Week". pp. 65-66.
  Citation
• Proceedings
  V. A. Zverev, I. S. Kiseleva, and V. V. Krzhizhanovskaya. Developing a model of nickel film growth in a PECVD reactor [in Russian]. In: International Conference "38th Science Week". pp. 59-60.
  Citation
• Article
  P. M. A. Sloot. Crisis computing: beslissingsondersteuning in een complexe wereld. Magazine Nationale Veiligheid en Crisisbeheersing 7(8), pp. 62-63.
  Abstract Citation Links
• Book
  M. Bubak, M. Turała, and K. Wiatr. Cracow '08 Grid Workshop, October 13-15, 2008, Cracow, Poland: proceedings. ISBN 9788361433002.
  Citation
• Article
  E. Lorenz, A. Caiazzo, and A. G. Hoekstra. Corrected momentum exchange method for lattice Boltzmann simulations of suspension flow. Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 79(3), p. 036705.
  Abstract Citation Links
• Proceedings
  D. A. Ivanov, I. Marinov, Y. E. Gorbachev, A. S. Smirnov, and V. V. Krzhizhanovskaya. Computer Simulation of Laser Annealing of a Nanostructured Surface. In: Proceedings of the ASME IDETC/CIE-2009 conference. ISBN 978-0-7918-3856-3. pp. DETC2009-87087.
  Citation
• Article
  S. Murtaza, A. G. Hoekstra, and P. M. A. Sloot. Compute bound and I/O bound Cellular Automata simulations on FPGA logic. ACM Transactions on Reconfigurable Technology and Systems 1(4), p. 23.
  Abstract Citation Links

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