Publications of the CSL group

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2004

Proceedings

K. Zajac, A. Tirado-Ramos, Z. Zhao, P. M. A. Sloot, and M. Bubak. Grid Services for HLA-based Distributed Simulation Frameworks. In: Grid computing. ISBN 9783540210481. pp. 147-154.

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Article

S. F. Portegies Zwart, H. Baumgardt, P. Hut, J. Makino, and S. L. W. McMillan. Formation of massive black holes through runaway collisions in dense young star clusters. Nature 428, pp. 724-726.

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Article

K. Zajac, M. T. Bubak, M. Malawski, and P. M. A. Sloot. Execution and Migration Management of HLA-Based Interactive Simulations on the Grid. Lecture Notes in Computer Science 3019, pp. 872-879.

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Article

C. P. Salzberg, A. T. Antony, and H. Sayama. Evolutionary dynamics of cellular automata-based self-replicators in hostile environments. BioSystems 78(1--3), pp. 119-134.

Citation Links
MSc Thesis

D. F. A. Vismans. Enabling Intelligent Interaction in Virtual Environments -- A Generic Architecture. Supervised by J. A. Kaandorp.

Citation
Article

W. F. C. van Wageningen, B. D. Kandhai, R. F. Mudde, and H. E. A. van den Akker. Dynamic flow in a Kenics static mixer: An assessment of various CFD methods. AIChE Journal 50, pp. 1684-1696.

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MSc Thesis

M. J. Patrick. Data Comunnication Infrastructure for Distributed Real-Time Simulation. Supervised by A. Tirado-Ramos and P. M. A. Sloot.

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Article

D. Hlushkou, B. D. Kandhai, A. Seidel-Morgenstern, and U. Tallarek. Coupled lattice-Boltzmann method and finite-difference simulations of electroosmosis in microfluidic channels. International Journal for Numerical Methods in Fluids pp. 507-532.

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Article

D. Merritt, S. Piatek, S. F. Portegies Zwart, and M. Hemsendorf. Core Formation by a Population of Massive Remnants. Astrophysical Journal 608, pp. L25-L28.

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Article

H. S. M. Cramer, V. Evers, E. V. Zudilova-Seinstra, and P. M. A. Sloot. Context analysis to support development of virtual reality applications. Virtual Reality 7(3-4), pp. 177-186.

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Article

B. Chopard and A. Hoekstra. Computational science of lattice Boltzmann modelling. Future Generation Computer Systems 20(6), pp. 907-908.

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Article

B. Chopard and A. Hoekstra. Computational Science of Lattice Boltzmann Modelling. Future Generation Computer Systems 20(6), pp. EX1-EX2, 907-1096.

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Proceedings

M. T. Bubak, G. D. van Albada, P. M. A. Sloot, and J. Dongarra. Computational Science - ICCS 2004: 4th International Conference, Kraków, Poland, June 6-9, 2004, Proceedings, Part IV. ISBN 978-3-540-22129-6. Lecture Notes in Computer Science 3039.

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Proceedings

M. T. Bubak, G. D. van Albada, P. M. A. Sloot, and J. Dongarra. Computational Science - ICCS 2004: 4th International Conference, Kraków, Poland, June 6-9, 2004, Proceedings, Part III. ISBN 978-3-540-22116-6. Lecture Notes in Computer Science 3038.

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Proceedings

M. T. Bubak, G. D. van Albada, P. M. A. Sloot, and J. Dongarra. Computational Science - ICCS 2004: 4th International Conference, Kraków, Poland, June 6-9, 2004, Proceedings, Part II. ISBN 978-3-540-22115-9. Lecture Notes in Computer Science 3037.

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Proceedings

M. T. Bubak, G. D. van Albada, P. M. A. Sloot, and J. Dongarra. Computational Science - ICCS 2004: 4th International Conference, Kraków, Poland, June 6-9, 2004, Proceedings, Part I. ISBN 978-3-540-22114-2. Lecture Notes in Computer Science 3036.

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MSc Thesis

A. de Ridder. Collaboration in the Virtual Laboratory for e-Science. Supervised by A. S. Z. Belloum.

Citation
Article

K. K. Baldridge, W. Sudholt, J. P. Greenberg, C. Amoreira, Y. Potier, I. Altintas, A. Birnbaum, D. Abramson, C. Enticott, and S. Garic. Cluster and Grid Infrastructure for Computational Chemistry and Biochemistry. Parallel Computing for Bioinformatics 20.

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Proceedings

P. M. A. Sloot, B. Chopard, and A. G. Hoekstra. Cellular Automata: 6th International Conference on Cellular Automata for Research and Industry, ACRI 2004, Amsterdam, The Netherlands, October 25-28, 2004. ISBN 978-3-540-23596-5. Lecture Notes in Computer Science 3305.

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Book

P. M. A. Sloot, B. Chopard, and A. G. Hoekstra. Cellular Automata, Proccedings ACRI2004. ISBN 3540235965, 9783540235965.

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Proceedings

L. A. Naumov. CTP (Commands Transfer Protocol) - Networking Protocol for High-Performance Computations. In: Proceedings of XI All-Russian Guidance Conference "Telematics'2004". 1, pp. 188-189.

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Proceedings

L. A. Naumov. CAMEL - Cellular Automata Modeling Environment & Library. In: Cellular Automata: 6th International Conference on Cellular Automata for Research and Industry, ACRI 2004, Amsterdam, The Netherlands, October 25-28, 2004. 3305, pp. 735-744.

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Proceedings

L. A. Naumov. CAMEL - Cellular Automata Modeling Environment & Library. In: Proceedings of XI All-Russian Guidance Conference "Telematics'2004". 1, pp. 184-186.

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Proceedings

L. A. Naumov and A. A. Shalyto. Automata Implementation in Object-Oriented Programs. In: Proceedings of XI All-Russian Guidance Conference "Telematics'2004". 1, pp. 332-334.

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Proceedings

Peter M. A. Sloot, Alfredo Tirado-Ramos, Alfons G. Hoekstra, and Marian Bubak. An interactive grid for non-invasive vascular reconstruction. In: 2004 IEEE International Symposium on Cluster Computing and the Grid, CCGrid 2004. ISBN 078038430X, 9780780384309. pp. 309-319.

Abstract Citation
Proceedings

P. M. A. Sloot, A. Tirado-Ramos, A. G. Hoekstra, and M. Bubak. An interactive grid environment for non-invasive vascular reconstruction. In: CCGrid 2004 . ISBN 078038430X, 9780780384309. pp. 309-319.

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Article

A. Tirado Ramos, P. M. A. Sloot, A. G. Hoekstra, and M. T. Bubak. An integrative approach to high-performance biomedical problem solving environments on the Grid. Parallel Computing 30(9-10), pp. 1037-1055.

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PhD Thesis

Z. Zhao. An agent based architecture for constructing Interactive Simulation Systems. Supervised by P. M. A. Sloot and G. D. van Albada.

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Article

D. Chakrabarty and S. F. Portegies Zwart. An Inverse-Problem Approach to Cluster Dynamics. Astronomical Journal 128, pp. 1046-1057.

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Article

A. M. M. Artoli, L. Abrahamyan, and A. G. Hoekstra. Accuracy versus Performance in Lattice Boltzmann BGK Simulations of Systolic Flows. Lecture Notes in Computer Science 3039, pp. 548-555.

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Proceedings

L. R. Yungelson, G. Nelemans, and S. F. Portegies Zwart. AM CVn systems as optical, X-ray and GWR sources. In: Revista Mexicana de Astronomia y Astrofisica Conference Series. pp. 117-119.

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Proceedings

I. Altintas, E. Jaeger, K. Lin, B. Ludäscher, and A. Memon. A Web Service Composition and Deployment Framework for Scientific Workflows. In: Proceedings of the 2nd Intl. Conference on Web Services(ICWS). pp. 814-816.

Citation Links
MSc Thesis

F. Wu. A Probabilistic Multimedia Retrieval Model. Supervised by A. P. de Vries and J. A. Kaandorp.

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Proceedings

V. V. Krzhizhanovskaya, Y. E. Gorbachev, and P. M. A. Sloot. A Grid-Based Problem-Solving Environment for Simulation of Plasma Enhanced Chemical Vapor Deposition. In: Book of abstracts of the International conference "Distributed Computing and Grid Technologies in Science and Education". ISBN 5953000529, 9785953000529. pp. 89-90.

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Proceedings

V. V. Krzhizhanovskaya, Y. E. Gorbachev, and P. M. A. Sloot. A Grid-Based Problem-Solving Environment for Simulation of Plasma Enhanced Chemical Vapor Deposition. In: Proceedings of the International conference "Distributed Computing and Grid Technologies in Science and Education".

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MSc Thesis

I. V. Korjoukov. A Cognitive Model of Human Drawing. Supervised by E. V. Zudilova.

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Article

D. P. Gavidia, E. V. Zudilova-Seinstra, and P. M. A. Sloot. A Client-Server Engine for Parallel Computation of High-Resolution Planes. Lecture Notes in Computer Science 3038, pp. 970-977.

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Proceedings

V. V. Krzhizhanovskaya, M. A. Zatevakhin, A. A. Ignatiev, Y. E. Gorbachev, W. J. Goedheer, and P. M. A. Sloot. A 3D Virtual Reactor for Simulation of Silicon-Based Film Production. In: Proceedings of the 5th International Bi-Annual ASME/JSME Symposium on Computational Technologies forFluid/Thermal/Structural/Chemical Systems with Industrial Applications. ISBN 0791846865, 9780791846865. 491-2, pp. 59-68.

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Article

L. A. Naumov and A. A. Shalyto. "Colorful" Cellular Automata. World of PC 2004, pp. 64-71.

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2003

Proceedings

C. Salzberg, A. T. Anthony, and H. Sayama. Visualizing evolutionary dynamics of self-replicators using graph-based geneology. In: Proceedings of the Seventh European Conference on Artificial Life (ECAL 2003). pp. 387-394.

Citation Links
Proceedings

E. V. Zudilova-Seinstra and P. M. A. Sloot. Virtual Reality and Desktop as a Combined Interaction-Visualisation Medium for a Problem-Solving Environment. In: Computational Science - ICCS 2003, Proceedings Part III. ISBN 3540401962, 9783540401964. 2659, pp. 1025-1034.

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Proceedings

K. Zajac, M. T. Bubak, M. Malawski, and P. M. A. Sloot. Towards a Grid Management System for HLA-Based Interactive Simulations. In: Proceedings Seventh IEEE International Symposium on Distributed Simulation and Real Time Applications. pp. 4-11.

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Proceedings

P. F. Spinnato, S. F. Portegies Zwart, M. Fellhauer, G. D. van Albada, and P. M. A. Sloot. Tools and Techniques for N-body Simulations. In: Memorie della Societa Astronomica Italiana Supplement. 1, p. 54.

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Proceedings

K. A. Iskra, G. D. van Albada, and P. M. A. Sloot. Time Warp cancellation optimizations on high latency networks. In: Proceedings - 7th IEEE International Symposium on Distributed Simulation and Real-Time Applications, DS-RT 2003. ISBN 9780769520360. pp. 128-135.

Abstract Citation Links
Proceedings

K. A. Iskra, G. D. van Albada, and P. M. A. Sloot. Time Warp Cancellation Optmisations on High Latency Networks. In: Proceedings Seventh IEEE International Symposium on Distributed Simulation and Real Time Applications (DS-RT 2003). pp. 128-135.

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Article

P. F. Spinnato, M. Fellhauer, and S. F. Portegies Zwart. The efficiency of the spiral-in of a black hole to the Galactic Centre. Monthly Notices of the Royal Astronomical Society 344(1), pp. 22-32.

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Proceedings

G. W. Kouwenhoven. The Primordial Binary Population in OB Associations. In: IAU Symposium.

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Article

S. F. Portegies Zwart, S. L. W. McMillan, and O. Gerhard. The Origin of IRS 16: Dynamically Driven In-Spiral of a Dense Star Cluster to the Galactic Center?. Astrophysical Journal 593(1), pp. 352-357.

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Proceedings

G. De Marchi, F. Paresce, and S. F. Portegies Zwart. The Mass Function of Galactic Clusters and its Evolution. In: Dynamics and Evolution of Dense Stellar Systems. 11, p. 32.

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Article

S. L. W. McMillan and S. F. Portegies Zwart. The Fate of Star Clusters near the Galactic Center. I. Analytic Considerations. Astrophysical Journal 596(1), pp. 314-322.

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Article

L. A. Naumov and A. A. Shalyto. The Art of Lift Programming. Object-Oriented Programming with Explicit States Separation. Informational Control Systems 2003, pp. 38-49.

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Chapter

L. A. Naumov. Tasks Solving for the Correspondence School of Modern Programming. Lesson 9: Codes and Data Compression. Part 1.. In: Unknown. pp. 1-36.

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Proceedings

I. Kiryukhin, K. Saskov, A. V. Boukhanovsky, W. Keulen, C. A. B. Boucher, and P. M. A. Sloot. Stochastic Modeling of Temporal Variabilitiy of HIV-1 Population. In: Computational Science-ICCS 2003. ISBN 3540401946, 9783540401940. 2657, pp. 125-135.

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Article

A. M. M. Artoli, A. G. Hoekstra, and P. M. A. Sloot. Simulation of a Systolic Cycle in a Realistic Artery with the Lattice Boltzmann BGK Method. International Journal of Modern Physics C 17(1 en 2), pp. 95-98.

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Article

J. A. Kaandorp, E. A. Koopman, P. M. A. Sloot, R. P. M. Bak, M. J. A. Vermeij, and L. E. H. Lampmann. Simulation and analysis of flow patterns around the scleractinian coral Madracis mirabilis (Duchassaing and Michelotti). Philosophical Transactions of the Royal Society B - Biological Sciences 358(1437), pp. 1551-1557.

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Proceedings

Michael Lees, Brian Logan, Ton Oguara, and Georgios Theodoropoulos. Simulating Agent-Based Systems with HLA: The case of SIM_AGENT - Part II. In: Proceedings of the 2003 European Simulation Interoperability Workshop.

Citation
Proceedings

R. M. H. Merks, A. G. Hoekstra, J. A. Kaandorp, and P. M. A. Sloot. Problem Solving Environment for Modelling Stony Coral Morphogenesis. In: Computational Science - ICCS 2003. ISBN 3540401946, 9783540401940. 2657, pp. 639-648.

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MSc Thesis

Jiajia Cui. Pricing Interest Rate Guarantees embedded in Life Insurance Contracts by Monte Carlo Simulation. Supervised by B. D. Kandhai.

Citation
MSc Thesis

K. Sakkos. Physical Properties of Dendritic Structures under a constant Electric Field.

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MSc Thesis

N. Kulk. On the Computational Complexity of Lattice Gas Automata. Supervised by A. G. Hoekstra.

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Article

H. Baumgardt, P. Hut, J. Makino, S. L. W. McMillan, and S. F. Portegies Zwart. On the Central Structure of M15. Astrophysical Journal 582(1), pp. L21-L24.

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Article

R. Merks, A. Hoekstra, J. Kaandorp, and P. Sloot. Models of coral growth: spontaneous branching, compactification and the Laplacian growth assumption. Journal of Theoretical Biology 224(2), pp. 153-166.

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Proceedings

J. A. Kaandorp. Modelling growth and form of stony corals and the influence of hydrodynamics on suspension feeding. In: Proceedings 9th International Coral Reef Symposium. 1, pp. 541-547.

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MSc Thesis

T. Krul. Modelling and Inferring Developmental Networks. Supervised by J. A. Kaandorp.

Citation
Proceedings

T. Krul, J. A. Kaandorp, and J. G. Blom. Modelling Developmental Regulatory Networks. In: Computational Science- ICCS 2003, Proceedings Part I. ISBN 3540401946, 9783540401940. 2660, pp. 688-697.

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PhD Thesis

A. M. M. Artoli. Mesoscopic Computational Haemodynamics. ISBN 9057761122, 9789057761126. Supervised by P. M. A. Sloot and A. G. Hoekstra.

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MSc Thesis

J. Cui. Mathematical Modelling of Calcium homeostasis in Yeast Cells. Supervised by J. A. Kaandorp.

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Article

A. Sills, S. Deiters, P. Eggleton, M. Freitag, M. Giersz, D. Heggie, J. Hurley, P. Hut, N. Ivanova, R. S. Klessen, P. Kroupa, J. C. jr. Lombardi, S. L. W. McMillan, S. F. Portegies Zwart, and H. Zinnecker. MODEST-2: a summary. New Astronomy 8(6), pp. 605-628.

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Proceedings

A. V. Porubov, G. A. Maugin, V. V. Gursky, V. V. Krzhizhanovskaya, and D. V. Shevchenko. Localized nonlinear strain waves in complex dispersive-dissipative solids. In: Proceedings of the XXXI International Conference "Advanced Problems in Mechanics", St. Petersburg, Russia, June 22-July 2, 2003. pp. 270-279.

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Proceedings

A. M. M. Artoli, B. D. Kandhai, H. C. J. Hoefsloot, A. G. Hoekstra, and P. M. A. Sloot. Lattice Boltzmann, a robust and accurate solver for interactive computational hemodynamics. In: Computational Science - ICCS 2003. ISBN 3540401946, 9783540401940. 2657, pp. 1034-1043.

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Proceedings

A. G. Hoekstra, J. van 't Hoff, A. M. M. Artoli, and P. M. A. Sloot. Lattice BGK Simulations of Unsteady Flow in a 2D Elastic Tube. In: Computational Science - ICCS 2003. ISBN 3540401946, 9783540401940. 2657, pp. 997-1006.

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Article

I. V. Surovtsev, M. A. Yurkin, A. N. Shvalov, V. M. Nekrasov, G. F. Sivolobova, A. A. Grajdantseva, V. P. Maltsev, and A. V. Chernyshev. Kinetics of the initial stage of immunoagglutionation studied with the scanning flow cytometer. Colloids and Surfaces B: Biointerfaces 32, pp. 245-255.

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Proceedings

I. V. Surovtsev, M. A. Yurkin, A. N. Shvalov, and G. F. Sivolobova. Kinetic study of the initial stages of agglutination process with scanning flow cytometer. In: Manipulation and Analysis of Biomolecules, Cells and Tissues. ISBN 9780819447623. pp. 354-363.

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Article

B. D. Kandhai, J. J. Derksen, and H. E. A. Van den Akker. Interphase drag coefficients in gas-solid flows. AIChE Journal 49, pp. 1060-1065.

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MSc Thesis

D. P. Gavidia Simonetti. Interactive Visualization of Biomedical Data. Supervised by E. V. Zudilova.

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PhD Thesis

R. G. Belleman. Interactive Exploration in Virtual Environments. ISBN 9057761017, 9789057761010. Supervised by P. M. A. Sloot.

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Article

M. Rohde, B. D. Kandhai, J. J. Derksen, and H. E. A. Van den Akker. Improved bounce-back methods for no-slip walls in lattice-Boltzmann schemes: Theory and simulations. Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 67, p. 066703.

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Proceedings

Z. Zhao, G. D. van Albada, A. Tirado-Ramos, K. Zajac, and P. M. A. Sloot. ISS-Studio: a prototype for a user-friendly tool for designing interactive experiments in Problem Solving Environments. In: Computational science - ICCS 2003. ISBN 3540401946, 9783540401940. 1, pp. 679-688.

Abstract Citation Links
PhD Thesis

P. F. Spinnato. Hybrid Systems for N-body Simulations. ISBN 9057761092, 9789057761096. Supervised by P. M. A. Sloot and G. D. van Albada.

Citation Links
Proceedings

P. M. A. Sloot, G. D. van Albada, and E. V. Zudilova-Seinstra. Grid-based Interactive Visualisation of Medical Images. In: Proceedings of the First European HealthGrid Conference. pp. 57-66.

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Article

C. Salzberg, A. Antony, and H. Sayama. Genetic diversification and complex genealogy of self-replicators discovered in simple cellular automata: A preliminary report. Journal of Three-dimensional Images 17(4), pp. 103-109.

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Proceedings

C. Salzberg, A. Antony, and H. Sayama. Genetic diversification and adaptation of self-replicators discovered in simple cellular automata. In: Proceedings of the Sixth International Conference on Humans and Computers (HC-2003). pp. 194-199.

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Proceedings

L. A. Naumov. Generalized Coordinates for Cellular Automata Grids. In: Computational Science - ICCS 2003, Melbourne, Australia and St. Petersburg, Russia, Proceedings Part II. 2658, pp. 869-878.

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Proceedings

C. M. Boily, P. Pastsis, S. F. Portegies Zwart, R. Spurzem, and C. Theis. Galactic and Stellar Dynamics, Proceedings of JENAM 2002, held in Porto, Portugal, 3-6 September, 2002. EAS Publications Series 10.

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Proceedings

C. M. Boily, P. Pastsis, S. F. Portegies Zwart, R. Spurzem, and C. Theis. Galactic and Stellar Dynamics. In: Galactic and Stellar Dynamics. 10.

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Proceedings

A. Tirado Ramos, K. Zajac, Z. Zhao, P. M. A. Sloot, G. D. van Albada, and M. T. Bubak. Experimental Grid Access for Dynamic Discovery and Data Transfer in Distributed Interactive Simulation Systems. In: Computational Science - ICCS 2003, Proceedings Part I. ISBN 3540401946, 9783540401940. 2657, pp. 284-292.

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Chapter

G. E. Brown, C. H. Lee, S. F. Portegies Zwart, and H. A. Bethe. Evolution of Neutron Star, Carbon-Oxygen White Dwarf Binaries. In: Formation and evolution of black holes in the Galaxy: selected papers with commentary editor. pp. 345-354.

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Proceedings

S. L. W. McMillan and S. F. Portegies Zwart. Evolution of Dense Star Clusters Near the Galactic Center. In: Dynamics and Evolution of Dense Stellar Systems. 11, p. 47.

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MSc Thesis

C. P. Salzberg. Emergent Evolutionary Dynamics of Self-Reproducing Cellular Automata. Supervised by Hiroki Sayama.

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MSc Thesis

C. Shen. Effectiveness of Approximation Models for Multi-Disciplinary Design Optimization.

Citation
Article

D. Pooley, W. H. G. Lewin, S. F. Anderson, H. Baumgardt, A. V. Filippenko, B. M. Gaensler, L. Homer, P. Hut, V. M. Kaspi, J. Makino, B. Margon, S. L. W. McMillan, S. F. Portegies Zwart, M. van der Klis, and F. Verbunt. Dynamical Formation of Close Binary Systems in Globular Clusters. Astrophysical Journal 591(2), pp. L131-L134.

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Book

L. A. Naumov. Dynamic Programming.

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Article

R. M. H. Merks, A. G. Hoekstra, J. A. Kaandorp, and P. M. A. Sloot. Diffusion-limited Aggregation in Laminar Flows. International Journal of Modern Physics C 14(9), pp. 1171-1182.

Abstract Citation Links
Proceedings

D. Kranzlmüller, M. Scarpa, and J. Volkert. DeWiz - A Modular tool Architecture for Parallel Program Analysis. In: Euro-Par 2003. Parallel Processing, 9th International Euro-Par Conference, Klagenfurt, Austria, August 26-29, 2003. Proceedings. ISBN 978-3-540-40788-1. Lecture Notes in Computer Science 2790, pp. 74-80.

Citation
Book

P. M. A. Sloot, D. Abrahamson, A. V. Bogdanov, J. J. Dongarra, A. Y. Zomaya, and Y. E. Gorbachev. Computational Science-ICCS 2003, Melbourne, Australia and St. Petersburg, Russia, Proceedings Part II.

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Book

P. M. A. Sloot, D. Abrahamson, A. V. Bogdanov, J. J. Dongarra, A. Y. Zomaya, and Y. E. Gorbachev. Computational Science-ICCS 2003, Melbourne, Australia and St. Petersburg, Russia, Proceedings Part I.

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Proceedings

P. M. A. Sloot, D. Abramson, A. V. Bogdanov, J. Dongarra, A. Y. Zomaya, and Y. E. Gorbachev. Computational Science - ICCS 2003, Melbourne, Australia and St. Petersburg, Russia, Proceedings Part IV. ISBN 978-3-540-40197-1. Lecture Notes in Computer Science 2660.

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Proceedings

P. M. A. Sloot, D. Abramson, A. V. Bogdanov, J. Dongarra, A. Y. Zomaya, and Y. E. Gorbachev. Computational Science - ICCS 2003, Melbourne, Australia and St. Petersburg, Russia, Proceedings Part III. ISBN 978-3-540-40196-4. Lecture Notes in Computer Science 2659.

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Proceedings

B. Ludäscher, I. Altintas, and A. Gupta. Compiling Abstract Scientific Workflows into Web Service Workflows. In: Proceedings of the 15th Intl. Conference on Scientific and Statistical Database Management(SSDBM).

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Article

L. A. Naumov and A. A. Shalyto. Cellular Automata. Realization and Experiments. World of PC 8, pp. 71-77.

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