2018
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ArticleSystem dynamics of human body thermal regulation in outdoor environments. Building and Environment 143, pp. 760-769..
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ArticleSurvey-based socio-economic data from slums in Bangalore, India. Scientific Data 5, 170200..
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ArticleSupplemented alkaline phosphatase supports the immune response in patients undergoing cardiac surgery: Clinical and computational evidence. Frontiers in Immunology 9, 2342..
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ArticleSpatial segregation, inequality, and opportunity bias in the slums of Bengaluru. Cities : The International Journal of Urban Policy and Planning 74, pp. 269-276..
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ArticleQuantification of complex modular architecture in plants. New Phytologist 218(2), pp. 859-872..
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ProceedingsPreface. In: Computational Science – ICCS 2018. ISBN 9783319937137. 3, pp. V-VI..
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ProceedingsPreface. In: Computational Science – ICCS 2018. ISBN 9783319937014. 2, pp. V-VI..
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ProceedingsPreface. In: Computational Science – ICCS 2018. ISBN 9783319936987. 1, pp. V-VI..
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PhD ThesisPatterns for multiscale computing. ISBN 9789463234092. Supervised by P. M. A. Sloot and A. G. Hoekstra..
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ProceedingsParallel performance analysis of bacterial biofilm simulation models. In: Computational Science – ICCS 2018. ISBN 9783319936987. I, pp. 496-505..
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ArticleNumerical investigation of the effects of red blood cell cytoplasmic viscosity contrasts on single cell and bulk transport behaviour. Applied Sciences 8(9), 1616..
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ArticleMultiscale Modeling: recent progress and open questions. Multiscale and Multidisciplinary Modeling, Experiments and Design 1(1), p. 57–68..
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ArticleMorphogenesis in Robot Swarms. Science Robotics 3(25), eaau9178..
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ArticleModelling Neutrophils' Response to Various Levels of Insults. Procedia Computer Science 136, pp. 390-397..
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ArticleMesoscopic Energy Minimization Drives Pseudomonas aeruginosa Biofilm Morphologies and Consequent Stratification of Antibiotic Activity Based on Cell Metabolism. Antimicrobial Agents and Chemotherapy 62(4), e02544-17..
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ArticleLoad balancing of parallel cell-based blood flow simulations. Journal of Computational Science 24, pp. 1-7..
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ArticleLiquidity risk in derivatives valuation: an improved credit proxy method. Quantitative Finance 18(3), pp. 467-481..
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ReportIvI Education vision..
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ArticleInformation processing features can detect behavioral regimes of dynamical systems. Complexity 2018, 6047846..
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ArticleInflow and outflow boundary conditions for 2D suspension simulations with the immersed boundary lattice Boltzmann method. Computers & fluids 172, p. 312–317..
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ArticleIncorporating Contagion in Portfolio Credit Risk Models Using Network Theory. Complexity 2018, 6076173..
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ArticleHigh-throughput method for extracting and visualizing the spatial gene expressions from in situ hybridization images: A case study of the early development of the sea anemone Nematostella vectensis. Gene expression patterns : GEP 27, pp. 36-45..
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ProceedingsHard and Soft Closing of Roads Towards Socially Optimal Routing. In: 2018 IEEE Intelligent Transportation Systems Conference. ISBN 9781728103235, 9781728103228. pp. 3499-3504..
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ArticleFinancial statement networks: an application of network theory in audit. The Journal of Network Theory in Finance 4(4), pp. 59-85..
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ProceedingsEvolutionary Game Theory Can Explain the Choice Between Apoptotic and Necrotic Pathways in Neutrophils. In: Proceedings 2018 IEEE International Conference on Bioinformatics and Biomedicine . ISBN 9781538654880, 9781538654873. pp. 1401-1405..
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ArticleEpigenome-associated phenotypic acclimatization to ocean acidification in a reef-building coral. Science Advances 4(6), eaar8028..
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ArticleDirected nucleation and growth by balancing local supersaturation and substrate/nucleus lattice mismatch. Proceedings of the National Academy of Sciences of the United States of America 115(14), pp. 3575-3580..
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ArticleCoupling Game Theory and Discrete-Event Simulation for Model-Based Ambulance Dispatching. Procedia Computer Science 136, pp. 398-407..
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ArticleCombined Lattice–Boltzmann and rigid-body method for simulations of shear-thickening dense suspensions of hard particles. Computers & fluids 172, pp. 474-482..
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ArticleCell-resolved blood flow simulations of saccular aneurysms: effects of pulsatility and aspect ratio. Journal of the Royal Society Interface 15(146), 20180485..
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ArticleCategorical and Geographical Separation in Science. Scientific Reports 8, 8253..
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ArticleAssessment of public charging infrastructure push and pull rollout strategies. Energy Policy 121, pp. 35-47..
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ArticleApplication of clustering methods for detecting critical acute coronary syndrome patients. Procedia Computer Science 136, pp. 370-379..
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ArticleAnalysis of publication activity of computational science society in 2001–2017 using topic modelling and graph theory. Journal of Computational Science 26, pp. 193-204..
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ArticleA study on the dynamics of temporary HIV treatment to assess the controversial outcomes of clinical trials: An in-silico approach. PLoS ONE 13(7), e0200892..
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ArticleA new hypothesis on the role of vessel topology in cerebral aneurysm initiation. Computers in Biology and Medicine 103, pp. 244-251..
2017
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ArticleeHealth in the future of medications management: personalisation, monitoring and adherence. BMC Medicine 15, 73..
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ArticleUncertainty quantification and sensitivity analysis applied to the wind wave model SWAN. Environmental Modelling & Software 95, pp. 344-357..
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ArticleThe study of the influence of obstacles on crowd dynamics. Procedia Computer Science 108, pp. 215-224..
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ArticleThe effect of allometric scaling in coral thermal microenvironments. PLoS ONE 12(10), e0184214..
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ArticleThe Art of Computational Science, Bridging Gaps - Forming Alloys. Procedia Computer Science 108, pp. 1-2..
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ArticleScatter Search Applied to the Inference of a Development Gene Network. Computation 5(2), 22..
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ArticleRevisiting the use of the immersed-boundary lattice-Boltzmann method for simulations of suspended particles. Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 96(1), 013302..
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ArticleRelaxing Synchronization in Parallel Agent-Based Road Traffic Simulation. ACM Transactions on Modeling and Computer Simulation 27(2), 14..
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ArticleQuantitative morphological analysis of 2D images of complex-shaped branching biological growth forms: the example of branching thalli of liverworts. BMC Research Notes 10(1), 103..
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ArticleQuantifying Synergistic Information Using Intermediate Stochastic Variables. Entropy 19(2), 85..
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PhD ThesisPhase transitions in complex systems. Supervised by P. M. A. Sloot, A. G. Hoekstra, and R. Quax..
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ArticleNovel approach to investigation of semiconductor MOCVD by microreactor technology. Journal of Physics: Conference Series 917(3), 032011..
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ArticleMultiscale computing in the exascale era. Journal of Computational Science 22, pp. 15-25..
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ArticleMultiscale Modelling and Simulation, 14th International Workshop. Procedia Computer Science 108, pp. 1811-1812..
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ChapterMore likely we would be ritually slaughtered. In: 43 Visions for Complexity. ISBN 9789813206854. pp. 65-66..
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ArticleModels of Pedestrian Adaptive Behaviour in Hot Outdoor Public Spaces. Procedia Computer Science 108, pp. 185-194..
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ArticleModelling the impact of household life cycle on slums in Bangalore. Computers, Environment and Urban Systems 64, pp. 275-287..
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ArticleModelling the distance impedance of protest attendance. Physica A : Statistical Mechanics and its Applications 468, pp. 171-182..
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BookInternational Conference on Computational Science, ICCS 2017..
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ArticleHemocell: a high-performance microscopic cellular library. Procedia Computer Science 108, pp. 159-165..
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ArticleErratum to. Behavior Research Methods 49(4), p. 1569..
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ArticleEfficient Estimation of Sensitivities for Counterparty Credit Risk with the Finite Difference Monte Carlo Method. Journal of Computational Finance 21(1), pp. 83-113..
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ArticleDesign and evaluation of a data-driven scenario generation framework for game-based training. IEEE Transactions on Computational Intelligence and AI in Games 9(3), pp. 213-226..
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ArticleData through the Computational Lens. Journal of Computational Science 20, pp. 81-84..
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ArticleCellular Level In-silico Modeling of Blood Rheology with An Improved Material Model for Red Blood Cells. Frontiers in Physiology 8, 563..
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ArticleAutomatic model construction for the behavior of human crowds. Applied Soft Computing 56, pp. 368-378..
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ArticleAnomaly detection in earth dam and levee passive seismic data using support vector machines and automatic feature selection. Journal of Computational Science 20, pp. 143-153..
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ProceedingsAnomaly detection in earth dam and levee passive seismic data using multivariate Gaussian. In: ICMLA 2017 : 16th IEEE International Conference on Machine Learning and Applications. ISBN 9781538614174, 9781538614181. pp. 685-690..
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ArticleAnomaly Detection in Clinical Data of Patients Undergoing Heart Surgery. Procedia Computer Science 108, pp. 99-108..
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ArticleAnalysis of Computational Science Papers from ICCS 2001-2016 using Topic Modeling and Graph Theory. Procedia Computer Science 108, pp. 7-17..
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ArticleA physical description of the adhesion and aggregation of platelets. Royal Society Open Science 4, 170219..
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ArticleA novel technique to combine and analyse spatial and temporal expression datasets: A case study with the sea anemone Nematostella vectensis to identify potential gene interactions. Developmental Biology 428(1), pp. 204-214..
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ArticleA cell-based mechanical model of coronary artery tunica media. Journal of the Royal Society Interface 14, 20170028..
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ArticleA Comparison of Fully-Coupled 3D In-Stent Restenosis Simulations to In-vivo Data. Frontiers in Physiology 8, 284..
2016
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ArticleTowards the virtual artery: a multiscale model for vascular physiology at the physics–chemistry–biology interface. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 374(2080), 20160146..
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ArticleThe influence of memory on indoor environment exploration: A numerical study. Behavior Research Methods 48(2), pp. 621-639..
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ProceedingsTechniques to integrate patient-specific simulation of aneurysmal blood flow into the clinical workflow. In: ECCOMAS Congress 2016 - Proceedings of the 7th European Congress on Computational Methods in Applied Sciences and Engineering. ISBN 9786188284401. pp. 147-154..
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ChapterSystems Biology and Health Systems Complexity. In: The Digital Patient. ISBN 9781118952788 . pp. 73-84..
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PhD ThesisSpatial gene expression quantification in changing morphologies. Supervised by P. M. A. Sloot and J. A. Kaandorp..
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ArticleSmile and Default: The Role of Stochastic Volatility and Interest Rates in Counterparty Credit Risk. Quantitative Finance 16(11), pp. 1725-1740..
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ArticleSimulating an Impact of Road Network Improvements on the Performance of Transportation Systems under Critical Load: Agent-based Approach. Procedia Computer Science 101, pp. 253-261..
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ArticleScaling of shear-induced diffusion and clustering in a blood-like suspension. Europhysics Letters 114(1), 14002..
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ProceedingsReproducibility of Two Innate Immune System Models. In: Digital Transformation and Global Society. ISBN 9783319497006. pp. 501-514..
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ProceedingsPreface. In: Digital Transformation and Global Society. ISBN 9783319497006. pp. V-VI..
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ArticlePartitioning of Arterial Tree for Parallel Decomposition of Hemodynamic Calculations. Procedia Computer Science 80, p. 977–987..
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ArticleNonparametric estimation of Fisher information from real data. Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 93(2), 023301..
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ArticleMultiscale modelling and simulation, 13th international workshop. Procedia Computer Science 80, pp. 1242-1243..
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ArticleLuminescence and density banding patterns in massive Porites corals around the Thai-Malay Peninsula, Southeast Asia. Limnology and Oceanography 61(6), pp. 2003-2026..
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BookInternational Conference on Computational Science 2016, ICCS 2016..
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ArticleInformation geometric analysis of phase transitions in complex patterns: the case of the Gray-Scott reaction-diffusion model. Journal of Statistical Mechanics : Theory and Experiment 2016(4), 043301..
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ArticleImmune System Model Calibration by Genetic Algorithm. Procedia Computer Science 101, pp. 161-171..
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ChapterFrom Molecules to Morphologies, a Multiscale Modeling Approach to Unravel the Complex System of Coral Calcification. In: The Cnidaria, Past, Present and Future. ISBN 9783319313054. pp. 223-236..
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ArticleFrom MDMA to Lady Gaga. Procedia Computer Science 101, pp. 96-106..
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ArticleEfficient computation of exposure profiles on real-world and risk-neutral scenarios for Bermudan swaptions. Journal of Computational Finance 20(1), pp. 139-172..
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PhD ThesisEfficient PDE based numerical estimation of credit and liquidity risk measures for realistic derivative portfolios. ISBN 978-94-028-0408-9. Supervised by P. M. A. Sloot and B. D. Kandhai..
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ArticleDevelopment and simulation of microfluidic Wheatstone bridge for high-precision sensor. Journal of Physics: Conference Series 738, 012071..
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PhD ThesisDetecting and disrupting criminal networks. ISBN 978-90-77595-41-1. Supervised by A. G. Hoekstra and Z. J. M. H. Geradts..
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ArticleData-driven Travel Demand Modelling and Agent-based Traffic Simulation in Amsterdam Urban Area. Procedia Computer Science 80, pp. 2030-2041..
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ArticleData through the Computational Lens, Preface for ICCS 2016. Procedia Computer Science 80, pp. 1-7..
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ArticleCrack detection in earth dam and levee passive seismic data using support vector machines. Procedia Computer Science 80, pp. 577-586..
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ArticleCorrigendum to “The discrete dipole approximation: An overview and recent developments” [J. Quant. Spectrosc. Radiat. Transfer 106 (2007) 558–589]. Journal of Quantitative Spectroscopy & Radiative Transfer 171, pp. 82-83..
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ArticleCorrigendum to “Experience of using FEM for real-time flood early warning systems: Monitoring and modelling Boston levee instability”. Journal of Computational Science 16, pp. 225-226..
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ArticleComputer Simulation Approach in Development of Propane-air Combustor Microreactor. Procedia Computer Science 101, pp. 76-85..
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PhD ThesisBiosilicification mechanisms: An investigation using computational modeling and experimentation. ISBN 9789402801125. Supervised by P. M. A. Sloot and J. A. Kaandorp..