-
MSc Thesis
J. Jänes.
Efficient integration of multiscale N-body systems.
Supervised by F. I. Pelupessy and S. F. Portegies Zwart.
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Proceedings
R. Cushing, S. Koulouzis, A. Belloum, and M. Bubak.
Dynamic handling for cooperating scientific web services.
In: Proceedings 2011 IEEE Seventh International Conference on eScience: 5-8 December 2011, Stockholm, Sweden.
ISBN 9780769545974.
pp. 232-239.
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Other: misc
M. C. F. Prosperi, M. Rosen-Zvi, A. Altmann, M. Zazzi, S. Di Giambenedetto, R. Kaiser, E. Schülter, D. Struck, P. M. A. Sloot, D. A. M. C. van de Vijver, A.-M. Vandamme, and A. Sönnerborg.
Correction: Antiretroviral Therapy Optimisation without Genotype Resistance Testing: A Perspective on Treatment History Based Models.
PLoS ONE
6(4).
-
Article
M. C. F. Prosperi, M. Rosen-Zvi, A. Altmann, M. Zazzi, S. Di Giambenedetto, R. Kaiser, E. Schülter, D. Struck, P. Sloot, D. A. van de Vijver, A.-M. Vandamme, and A. Sönnerborg.
Correction: Antiretroviral Therapy Optimisation without Genotype Resistance Testing: A Perspective on Treatment History Based Models.
PLoS ONE
6(4).
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MSc Thesis
H. Þorsdottir.
Conservation Properties of the Hamiltonian Particle-Mesh method for the Quasi-Geostrophic Equations on a sphere.
Supervised by J. Frank.
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PhD Thesis
İ. Altıntaş.
Collaborative provenance for workflow-driven science and engineering.
ISBN
9789090259796.
Supervised by
P. M. A. Sloot and B. Ludäscher.
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Article
A. Belloum, M. A. Inda, D. Vasunin, V. Korkhov, Z. Zhao, H. Rauwerda, T. M. Breit, M. Bubak, and L. O. Hertzberger.
Collaborative e-Science Experiments and Scientific Workflows.
IEEE Internet Computing
15(4), pp. 39-47.
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Article
S. Murtaza, A. G. Hoekstra, and P. M. A. Sloot.
Cellular automata simulations on a FPGA cluster.
International Journal of High Performance Computing Applications
25(2), pp. 193-204.
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Article
L. Naumov, A. Hoekstra, and P. Sloot.
Cellular automata models of tumour natural shrinkage.
Physica A : Statistical Mechanics and its Applications
390(12), pp. 2283-2290.
-
Article
V. V. Krzhizhanovskaya.
Better Flood Protection thanks to SARA's HPC Cloud.
"High Performance Computing E-Science Support", SARA Annual Report 2010
pp. 39-39.
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Proceedings
A. L. Pyayt, I. I. Mokhov, A. Kozionov, V. Kusherbaeva, N. B. Melnikova, V. V. Krzhizhanovskaya, and R. J. Meijer.
Artificial intelligence and finite element modelling for monitoring flood defence structures.
In:
EESMS 2011 proceedings .
ISBN
9781457706080.
-
Proceedings
A. L. Pyayt, I. I. Mokhov, A. Kozionov, V. Kusherbaeva, N. B. Melnikova, V. V. Krzhizhanovskaya, and R. J. Meijer.
Artificial Intelligence and Finite Element Modelling for Monitoring Flood Defence Structures.
-
Proceedings
D. Botman and J. A. Kaandorp.
An integrated approach to infer the gene network in early development of the cnidarian Nematostella vectensis..
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Proceedings
F. Berretz, S. Skorupa, V. Sander, A. Belloum, and M. Bubak.
Actor-driven workflow execution in distributed environments.
In: Euro-Par 2010 Parallel Processing Workshops.
ISBN 9783642218781.
pp. 287-294.
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Proceedings
J. A. Kaandorp, C. Cronemberger, and L. Huisman.
A spatial model of calcification in scleractinian corals.
In:
Molecular iomineralization in marine organisms: Nanobiotechnology and biomedical application.
ISBN
9788890580505.
p. 14.
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Article
A. Bankhead, E. Mancini, A. C. Sims, R. S. Baric, S. McWeeney, and P. M. A. Sloot.
A simulation framework to investigate in vitro viral infection dynamics.
Procedia Computer Science
4, pp. 1798-1807.
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Proceedings
J. Borgdorff, J.-L. Falcone, E. Lorenz, B. Chopard, and A. G. Hoekstra.
A principled approach to distributed multiscale computing, from formalization to execution.
In:
Workshop Proceedings, 7th IEEE International Conference on eScience.
ISBN
9781467300261.
pp. 97-104.
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PhD Thesis
G. Ertaylan.
A multi-scale approach for deciphering HIV infection.
Supervised by
P. M. A. Sloot.
-
Article
Q. C. Bui, S. Katrenko, and P. M. A. Sloot.
A hybrid approach to extract protein-protein interactions.
Bioinformatics
27(2), pp. 259-265.
-
Proceedings
B. Chopard, J.-L. Falcone, A. G. Hoekstra, and J. Borgdorff.
A framework for multiscale and multiscience modeling and numerical simulations.
In:
Unconventional Computation.
ISBN
9783642213410.
pp. 2-8.
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Article
I. Altintas, M. K. Anand, T. N. Vuong, S. Bowers, B. Ludäscher, and P. M. A. Sloot.
A data model for analyzing user collaborations in workflow-driven e-Science.
The International Journal of Computers and Their Applications (IJCA)
18(3), pp. 160-179.
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Article
C. Tamulonis, M. Postma, H. Q. Marlow, C. R. Magie, J. de Jong, and J. Kaandorp.
A cell-based model of Nematostella vectensis gastrulation including bottle cell formation, invagination and zippering.
Developmental Biology
351(1), pp. 217-228.
-
Proceedings
N. Javaheri, C. M. Cronemberger, and J. Kaandorp.
A Particle-Based Model for Aggregate Formation in Biomineralization.
In:
Molecular iomineralization in marine organisms: Nanobiotechnology and biomedical application.
ISBN
9788890580505.
p. 23.
-
Article
I. Altintas, M. K. Anand, T. Vuong, S. Bowers, B. Ludäscher, and P. M. A. Sloot.
A Data Model for Analyzing User Collaborations in Workflow-Driven eScience.
The International Journal of Computers and Their Applications (IJCA)
18(3), pp. 160-179.
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Article
A. Caiazzo, D. Evans, J.-L. Falcone, J. Hegewald, E. Lorenz, B. Stahl, D. Wang, J. Bernsdorf, B. Chopard, J. Gunn, R. Hose, M. Krafczyk, P. Lawford, R. Smallwood, D. Walker, and A. Hoekstra.
A Complex Automata approach for in-stent restenosis: two-dimensional multiscale modelling and simulations.
Journal of Computational Science
2(1), pp. 9-17.
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Article
N. Graf, A. Hoppe, E. Georgiadi, R. Belleman, C. Desmedt, D. Dionysiou, M. Erdt, J. Jacques, E. Kolokotroni, A. Lunzer, M. Tsiknakis, and G. Stamatakos.
‘In silico' oncology for clinical decision making in the context of nephroblastoma.
Klinische Pädiatrie
221(3), pp. 141-149.
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Chapter
M. Bubak, M. Malawski, T. Gubala, M. Kasztelnik, P. Nowakowski, D. Harezlak, T. Bartynski, J. Kocot, E. Ciepiela, W. Funika, D. Krol, B. Balis, M. Assel, and A. Tirado-Ramos.
Virtual Laboratory for Collaborative Applications.
In: Handbook of research on computational grid technologies for life sciences, biomedicine, and healthcare.
ISBN 9781605663746.
pp. 531-551.
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Article
R. J. Allison, S. P. Goodwin, R. J. Parker, S. F. Portegies Zwart, R. de Grijs, and M. B. N. Kouwenhoven.
Using the minimum spanning tree to trace mass segregation.
Monthly Notices of the Royal Astronomical Society
395(3), pp. 1449-1454.
-
Book
E. Zudilova-Seinstra, T. Adriaansen, and R. van Liere.
Trends in interactive visualization: State-of-the-art survey.
ISBN 9781848002685.
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Proceedings
A. Caiazzo, D. Evans, J.-L. Falcone, J. Hegewald, E. Lorenz, B. Stahl, D. Wang, J. Bernsdorf, B. Chopard, J. Gunn, R. Hose, M. Krafczyk, P. Lawford, R. Smallwood, D. Walker, and A. G. Hoekstra.
Towards a Complex Automata multiscale model of in-stent restenosis.
In:
Computational Science – ICCS 2009.
ISBN
9783642019708.
I, pp. 705-714.
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Proceedings
G. de Marchi, F. Paresce, and S. F. Portegies Zwart.
Time Evolution of the Stellar Mass Function of Galactic Clusters.
In: American Astronomical Society Meeting #213, #442.06 Abstracts.
American Astronomical Society Meeting Abstracts
41, p. 320.
-
Article
G. De Marchi, F. Paresce, and S. Portegies Zwart.
Time Evolution of the Stellar Mass Function of Galactic Clusters.
Bulletin - American Astronomical Society
41, p. 320.
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Proceedings
J. Meizner, M. Malawski, S. Naqvi, and M. Bubak.
Threat model for MOCCA component environment.
In: Cracow'08 Grid Workshop: October 13-15, 2008 Cracow, Poland: proceedings.
ISBN 9788361433002.
pp. 94-102.
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Proceedings
A. Tirado-Ramos and A. Shiflet.
Third Workshop on Teaching Computational Science (WTCS 2009).
In: Computational Science – ICCS 2009.
ISBN 9783642019739.
II, pp. 3-4.
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Article
V. V. Korkhov, J. T. Moscicki, and V. V. Krzhizhanovskaya.
The user-level scheduling of divisible load parallel applications with resource selection and adaptive workload balancing on the Grid.
IEEE Systems Journal
3(1), pp. 121-130.
-
Article
S. F. Portegies Zwart.
The lost siblings of the Sun.
Astrophysical Journal Letters
696(1), pp. L13-L16.
-
Article
J. C. A. Miller-Jones, P. G. Jonker, G. Nelemans, S. Portegies Zwart, V. Dhawan, W. Brisken, E. Gallo, and M. P. Rupen.
The formation of the black hole in the X-ray binary system V404 Cyg.
Monthly Notices of the Royal Astronomical Society
394(3), pp. 1440-1448.