-
Proceedings
M. Malawski, T. Gubala, M. Kasztelnik, T. Bartynski, and M. T. Bubak.
Towards A High-Level Scripting Approach for Building Component-Based Gridspace Applications.
In: CoreGRID Workshop on Grid Programming Model, Grid and P2P Systems Architecture, Grid Systems, Tools and Environments.
pp. 309-321.
-
Article
A. G. Hoekstra, E. Lorenz, J.-L. Falcone, and B. Chopard.
Toward a Complex Automata Formalism for Multi-Scale Modeling.
International Journal for Multiscale Computational Engineering
pp. 491-502.
-
Article
M. B. N. Kouwenhoven, A. G. A. Brown, S. F. Portegies Zwart, and L. Kaper.
The primordial binary population. II.. Recovering the binary population for intermediate mass stars in Scorpius OB2.
Astronomy & Astrophysics
pp. 77-104.
-
Article
S. F. Portegies Zwart, E. Gaburov, H.-C. Chen, and M. A. Gürkan.
The present day mass function in the central region of the Arches cluster.
Monthly Notices of the Royal Astronomical Society
pp. L29-L33.
-
Article
S. F. Portegies Zwart.
The gravitational wave signature of young and dense star clusters.
Advances in Space Research
pp. 275-279.
-
Article
J. van den Berk, S. F. Portegies Zwart, and S. L. W. McMillan.
The formation of higher order hierarchical systems in star clusters.
Monthly Notices of the Royal Astronomical Society
pp. 111-122.
-
Article
S. F. Portegies Zwart and S. P. Rusli.
The evolution of binary star clusters and the nature of NGC 2136/NGC 2137.
Monthly Notices of the Royal Astronomical Society
pp. 931-940.
-
Article
M. Gieles, E. Athanassoula, and S. F. Portegies Zwart.
The effect of spiral arm passages on the evolution of stellar clusters.
Monthly Notices of the Royal Astronomical Society
pp. 809-819.
-
Article
M. A. Yurkin and A. G. Hoekstra.
The discrete dipole approximation: an overview and recent developments.
Journal of Quantitative Spectroscopy & Radiative Transfer
pp. 558-589.
-
Article
M. A. Yurkin, V. P. Maltsev, and A. G. Hoekstra.
The discrete dipole approximation for simulation of light scattering by particles much larger than the wavelength.
Journal of Quantitative Spectroscopy & Radiative Transfer
pp. 546-557.
-
MSc Thesis
R. J. Strijkers.
The Network is in the Computer.
Supervised by R. J. Meijer.
-
Proceedings
M. A. Yurkin.
The Amsterdam DDA (tutorial).
In: Proceedings of the DDA - Workshop.
p. 30.
-
Article
E. N. Mamikonyan, S. L. W. McMillan, S. F. Portegies Zwart, and E. Vesperini.
TKira—A hybrid N-body code.
Proceedings of the International Astronomical Union
pp. 471-472.
-
Article
M. A. Yurkin, A. G. Hoekstra, R. S. Brock, and J. Q. Lu.
Systematic comparison of the discrete dipole approximation and the finite difference time domain method for large dielectric scatterers.
Optics Express
pp. 17902-17911.
-
Proceedings
M. A. Yurkin, A. G. Hoekstra, R. S. Brock, and J. Q. Lu.
Systematic comparison of the discrete dipole approximation and the finite difference time domain method.
In:
The 10th Conference on Electromagnetic and Light Scattering.
pp. 249-252.
-
Proceedings
S. L. W. McMillan and S. F. Portegies Zwart.
Stellar Collisions and Black-Hole Formation in Dense Star Clusters.
In: Massive Stars in Interactive Binaries.
pp. 697-697.
-
Proceedings
J. M. Fregeau, F. A. Rasio, P. Cheung, and S. F. Portegies Zwart.
Stellar Collisions During Binary Interactions and the Effect on Runaway Collisions.
In: Massive Stars in Interactive Binaries.
pp. 715-715.
-
Article
S. F. Portegies Zwart, S. L. W. McMillan, and J. Makino.
Star cluster ecology - VII. The evolution of young dense star clusters containing primordial binaries.
Monthly Notices of the Royal Astronomical Society
pp. 95-106.
-
Other: misc
V. V. Krzhizhanovskaya.
Special Issue on Simulation of Multiphysics Multiscale Systems.
International Journal for Multiscale Computational Engineering
5(1).
-
Proceedings
M. T. Bubak, M. Malawski, P. Nowakowski, and S. Unger.
Software engineering aspects of K-WfGrid.
In: Cracow'06 Grid Workshop, Vol 2: K-Wf Grid: the knowledge-based workflow system for Grid applications: October 15--18, 2006 Cracow, Poland.
pp. 162-169.
-
Proceedings
V. V. Krzhizhanovskaya and S. Sun.
Simulation of Multiphysics Multiscale Systems: Introduction to the ICCS’2007 Workshop.
In:
Computational Science – ICCS 2007.
ISBN
9783540725848.
pp. 755-761.
-
Proceedings
S. F. Portegies Zwart and S. L. W. McMillan.
Simulating Young Star-Clusters with Primordial Binaries.
In: Massive Stars in Interactive Binaries.
pp. 597-597.
-
Article
L. Axner, J. Lätt, A. G. Hoekstra, B. Chopard, and P. M. A. Sloot.
Simulating Time Harmonic Flows with the Regularized L-BGK Method.
International Journal of Modern Physics C
pp. 661-666.
-
Article
L. Axner, A. G. Hoekstra, and P. M. A. Sloot.
Simulating Time Harmonic Flows with the Lattice Boltzmann Method.
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics
p. 036709.
-
Article
J. Kitowski, K. Boryczko, M. T. Bubak, W. Dzwinel, W. Funika, and R. Slota.
Rozwój srodków i narzedzi informatyki dla potrzeb symulacji i budowy aplikacji gridowych (Development of tools and environments for computer simulations and grid applications).
Pomiary, Automatyka, Kontrola
pp. 26-40.
-
Proceedings
J. Mo'scicki, M. T. Bubak, H. C. Lee, A. Muraru, and P. M. A. Sloot.
Quality of Service on the Grid with User Level Scheduling.
In:
CGW'06 Proceedings.
pp. 119-129.
-
Proceedings
B. Baliś, M. T. Bubak, and J. Wach.
Provenance tracking in the Virolab Virtual Laboratory.
In: PPAM 2007: 7th international conference on Parallel Processing \& Applied Mathematics: Gdask, Poland, September 9--12, Book of abstracts.
pp. 50-50.
-
MSc Thesis
K. C. Maheshwari.
Problem Solving Environment for Medical Image Analysis Application Development.
Supervised by S. Olabarriaga and A. S. Z. Belloum.
-
Report
K. J. Rycerz, M. T. Bubak, P. M. A. Sloot, and V. S. Getov.
Problem Solving Environment for Distributed Interactive Applications.
.
-
Report
R. M. Badia, R. Sirvent, M. T. Bubak, W. Funika, and P. Machner.
Performance monitoring of GRID superscalar with OCM-G/G-PM: integration issues.
-
Proceedings
S. Murtaza, A. G. Hoekstra, and P. M. A. Sloot.
Performance evaluation of FPGA-based Cellular Automata accelerators.
In:
Proceedings of the Third Annual Reconfigurable Systems Summer Institute (RSSI'07).
-
Article
S. Harfst, A. Gualandris, D. Merritt, R. Spurzem, S. F. Portegies Zwart, and P. Berczik.
Performance analysis of direct N-body algorithms on special-purpose supercomputers.
New Astronomy
pp. 357-377.
-
Article
A. Gualandris, S. F. Portegies Zwart, and A. Tirado Ramos.
Performance analysis of direct N-body algorithms on highly distributed systems.
Parallel Computing
pp. 159-173.
-
Proceedings
R. M. Badia, R. Sirvent, M. T. Bubak, W. Funika, and P. Machner.
Performance Monitoring of Grid Superscalar with OCM-G/G-PM: Tuning and Improvements.
In: CoreGRID Workshop on Grid Programming Model, Grid and P2P Systems Architecture, Grid Systems, Tools and Environments.
-
Proceedings
S. Murtaza, A. G. Hoekstra, and P. M. A. Sloot.
Performance Modeling of 2D Cellular Automata on FPGA.
In:
International Conference on Field Programmable Logic and Applications, FPL 2007.
pp. 74-78.
-
Article
L. Feyen, J. A. Vrugt, B. S. Ó Nualláin, J. Knijff, and A. De Roo.
Parameter optimisation and uncertainty assessment for large-scale streamflow simulation with the LISFLOOD model.
Journal of Hydrology
pp. 276-289.
-
Proceedings
S. D. Olabarriaga, A. J. Nederveen, and B. Ó Nualláin.
Parameter Sweeps for Functional MRI Research in the ``Virtual Laboratory for e-Science'' Project.
In: CCGRID 2007. Seventh IEEE International Symposium on Cluster Computing and the Grid, 2007..
pp. 685-690.
-
Article
W. Rzasa, M. T. Bubak, B. Baliś, and T. Szepieniec.
Overhead verification for cryptographically secured transmission on the Grid.
Computing and Informatics
pp. 89-101.
-
Book
A. G. Hoekstra, V. P. Maltsev, and G. Videen.
Optics of Biological Particles.
-
Article
E. V. Zudilova-Seinstra.
On the role of individual human abilities in the design of adaptive user interfaces for scientific problem solving environments.
Knowledge and Information Systems
pp. 243-270.
-
Article
V. V. Gvaramadze, A. Gualandris, and S. Portegies Zwart.
On the origin of hyperfast neutron stars.
Proceedings of the International Astronomical Union
pp. 365-366.
-
Proceedings
B. R. Brandl, S. F. Portegies Zwart, A. F. J. Moffat, and D. F. Chernoff.
On the Origin of the Most Massive Stars Around R136.
In: Massive Stars in Interactive Binaries.
pp. 629-629.
-
Article
M. Gieles, H. J. G. L. M. Lamers, and S. F. Portegies Zwart.
On the Interpretation of the Age Distribution of Star Clusters in the Small Magellanic Cloud.
Astrophysical Journal
pp. 268-274.
-
Article
Y. E. Gorbachev, M. A. Zatevakhin, A. A. Ignatiev, and V. V. Krzhizhanovskaya.
Numerical modeling of heat and mass transfer processes in PECVD reactors for growing silicon films under the conditions of intense formation of higher silanes in the gas phase.
HEAT TRANSFER RESEARCH
pp. 71-84.
-
Proceedings
K. J. Rycerz, M. T. Bubak, M. Malawski, and P. M. A. Sloot.
Multiple HLA Federate Processes in Grid Environment.
In:
CGW'06 Proceedings.
pp. 293-294.
-
Chapter
P. M. A. Sloot, A. Tirado Ramos, and M. T. Bubak.
Multi-Science Decision Support for HIV Drug Resistance Treatment.
In:
Expanding the Knowledge Economy: Issues, Applications, Case Studies, eChallenges e-2007 Conference Proceedings.
pp. 597-606.
-
Chapter
-
Chapter
P. M. A. Sloot and A. G. Hoekstra.
Modeling Dynamic Systems with Cellular Automata.
In:
Handbook of Dynamic System Modeling.
ISBN
9781420010855.
pp. 21.1-21.19.
-
Proceedings
M. A. Yurkin, K. A. Semyanov, V. P. Maltsev, and A. G. Hoekstra.
Light scattering by granulated spheres applied to discriminate subtypes of granulated blood cells.
In:
International Conference on Laser Applications in Life Sciences 2007.
pp. TuL07-II3.
-
Proceedings
M. T. Bubak, P. Nowakowski, and S. Unger.
K-WfGrid knowledge-based workflow system for Grid applicatiobs.
In: Cracow'06 Grid Workshop, Vol 2: K-Wf Grid: the knowledge-based workflow system for Grid applications: October 15--18, 2006 Cracow, Poland.
pp. 1-12.
-
Article
A. I. Sills, L. Subr, and S. F. Portegies Zwart.
Joint Discussion 14 Modeling dense stellar systems.
Highlights of Astronomy
pp. 421-421.
-
Proceedings
M. Malawski, M. T. Bubak, F. Baude, D. Caromel, L. Henrio, and M. Morel.
Interoperability of grid component models: GCM and CCA case study.
In: Towards Next Generation Grids, proceedings of the CoreGRID Symposium in conjunction with Euro-Par 2007.
pp. 95-105.
-
Article
R. G. Belleman, M. Scarpa, and B. Stolk.
Interactive Simulation and Visualization for Cancer Treatment Planning with Grid-based Technology.
ERCIM News
pp. 22-23.
-
Article
K. J. Rycerz, A. Tirado Ramos, A. Gualandris, S. F. Portegies Zwart, M. T. Bubak, and P. M. A. Sloot.
Interactive N-Body simulations on the Grid: HLA versus MPI.
International Journal of High Performance Computing Applications
pp. 210-221.
-
MSc Thesis
Z. R. Rahhal.
Interactive Distributed Computing Middleware.
Supervised by
R. G. Belleman.
-
MSc Thesis
T. de Kler.
Integration of the ARToolKitPlus optical tracker into the Personal Space Station.
Supervised by
R. G. Belleman.
-
Article
S. D. Olabarriaga, J. G. Snel, C. P. Botha, and R. G. Belleman.
Integrated Support for Medical Image Analysis Methods: from Development to Clinical Application.
IEEE Transactions on Information Technology in Biomedicine
pp. 47-57.
-
Article
J. Vidal Rodríguez and J. A. Kaandorp.
Inferring the distribution of Inter-Reaction Intervals for Diffusion-Limited Reactions on Lattices.
International Journal of Modern Physics C
pp. 749-757.
-
Article
C. H. Liu, T. Wang, M. Postma, A. G. Obukhov, C. Montell, and R. C. Hardie.
In Vivo Identification and Manipulation of the Ca2+ Selectivity Filter in the Drosophila Transient Receptor Potential Channel.
The Journal of Neuroscience
pp. 604-615.
-
Article
S. F. Portegies Zwart, R. G. Belleman, and P. M. Geldof.
High-performance direct gravitational N-body simulations on graphics processing units.
New Astronomy
pp. 641-650.
-
PhD Thesis
L. Axner.
High performance computational hemodynamics with the Lattice Boltzmann method.
ISBN
9789057761706.
Supervised by
P. M. A. Sloot and A. G. Hoekstra.
-
MSc Thesis
J. Bédorf.
High Performance Direct Gravitational N-body Simulations on Graphics Processing Units -- An implementation in CUDA.
Supervised by
R. G. Belleman and S. F. Portegies Zwart.
-
MSc Thesis
P. M. Geldof.
Generic Computing on a Graphics Processing Unit.
Supervised by
R. G. Belleman.
-
PhD Thesis
L. A. Naumov.
Generalized Coordinates Introduction Method and a Tool for Computational Experiments' Software Design Automation, Basing on Cellular Automata.
Supervised by A. A. Shalyto.
-
Proceedings
B. Bali\'s, M. T. Bubak, and B. Labno.
GEMINI: Generic Monitoring Infrastructure for Grid resources and applications.
ISBN 978-83-915141-8-4.
pp. 60-73.
-
Proceedings
B. Baliś, M. T. Bubak, and M. Pelczar.
From monitoring data to experimental information monitoring of Grid scientific workflows.
In: Third IEEE international conference on e-Science and Grid computing: Bangalore, India, 10--13 December 2007.
pp. 77-84.
-
Article
W. E. G. Müller, A. Boreiko, U. Schloemacher, X. Wang, M. Nawaz Tahir, W. Tremel, D. Brandt, J. A. Kaandorp, and H. C. Schroeder.
Fractal-related assembly of the axial filament in the demosponge Suberites domuncula: relevance to biomineralization and the formation of biogenic silica,.
Biomaterials
pp. 4501-4511.
-
Proceedings
M. B. N. Kouwenhoven, A. G. A. Brown, S. F. Portegies Zwart, and L. Kaper.
Finding the Primordial Binary Population in Sco OB2: on the interpretation of binary star observations.
In: IAU Symposium.
-
Chapter
M. Kasztelnik, M. T. Bubak, C. Górka, M. Malawski, and T. Gubala.
Fault tolerant Grid registery.
In: Distributed and parallel systems: from cluster to Grid computing.
pp. 135-144.
-
Article
M. P. Muno, B. M. Gaensler, J. S. Clark, R. de Grijs, D. Pooley, I. R. Stevens, and S. F. Portegies Zwart.
Exciting the magnetosphere of the magnetar CXOU J164710.2-455216 in Westerlund 1.
Monthly Notices of the Royal Astronomical Society
pp. L44-L48.
-
Article
Y. Fomekong Nanfack, J. A. Kaandorp, and J. G. Blom.
Efficient parameter estimation for spatio-temporal models of pattern formation: Case study of Drosophila melanogaster.
Bioinformatics
pp. 3356-3363.
-
Proceedings
B. Baliś, M. T. Bubak, K. Sterna, and A. Bemben.
Efficient and Reliable Execution of Legacy Codes Exposed as Services.
In: International Conference on Computational Science (1).
pp. 390-397.
-
Proceedings
V. V. Krzhizhanovskaya and V. V. Korkhov.
Dynamic Load Balancing of Black-Box Applications with a Resource Selection Mechanism on Heterogeneous Resources of the Grid.
In:
Proceedings of the Ninth International Conference on Parallel Computing Technologies.
pp. 245-260.
-
Article
M. A. Yurkin, K. A. Semyanov, V. P. Maltsev, and A. G. Hoekstra.
Discrimination of granulocyte subtypes from light scattering: theoretical analysis using a granulated sphere model.
Optics Express
pp. 16561-16580.
-
PhD Thesis
M. A. Yurkin.
Discrete dipole simulations of light scattering by blood cells.
ISBN
9057761696, 9789057761690.
Supervised by
P. M. A. Sloot and A. G. Hoekstra.
-
Proceedings
M. van Woudenberg and L. A. Naumov.
Development of Tools for Performing Computations on FPGA Systems, Using CAME&L Software.
In: Proceedings of XIV All-Russian Guidance Conference "Telematics-2007".
pp. 527-529.
-
MSc Thesis
M. Lankamp.
Developing a reference implementation for a microgrid of microthreaded microprocessors.
Supervised by C. R. Jesshope.
-
Proceedings
M. A. Yurkin.
Current capabilities of the discrete dipole approximation for very large particles: speed, accuracy, and computational tricks.
In: Proceedings of the DDA - Workshop.
pp. 31-33.
-
Proceedings
T. Gubala, D. Harezlak, M. T. Bubak, and M. Malawski.
Constructing abstract workflows of applications with workflow composition tool.
In: Cracow'06 Grid Workshop, Vol 2: K-Wf Grid: the knowledge-based workflow system for Grid applications: October 15--18, 2006 Cracow, Poland.
pp. 25-30.
-
Proceedings
L. A. Naumov.
Conceptual Changes in Cellular Automata Development Library (CADLib) from Version 1.0 to Version 1.1.
In: Proceedings of XIV All-Russian Guidance Conference "Telematics-2007".
pp. 529-530.
-
Article
M. Dobrzyński, J. Vidal Rodríguez, J. A. Kaandorp, and J. G. Blom.
Computational methods for diffusion-influenced biochemical reactions.
Bioinformatics
pp. 1969-1977.
-
Report
P. M. A. Sloot, D. Frenkel, H. A. van der Vorst, A. van Kampen, H. Bal, P. Klint, R. M. M. Mattheij, J. van Wijk, J. Schaye, H.-J. Langevelde, R. H. Bisseling, B. Smit, E. Valenteyn, H. Sips, J. B. T. M. Roerdink, and K. G. Langedoen.
Computational e-Science: Studying complex systems in silico.
-
Article
A. Penttilä, E. Zubko, K. Lumme, K. Muinonen, M. A. Yurkin, B. T. Draine, J. Rahola, A. G. Hoekstra, and Y. Shkuratov.
Comparison between discrete dipole implementations and exact techniques.
Journal of Quantitative Spectroscopy & Radiative Transfer
pp. 417-436.
-
PhD Thesis
A. Tirado Ramos.
Collaborative software architectures for interactive biomedical applications.
ISBN
9789064641435.
Supervised by
P. M. A. Sloot and M. T. Bubak.
-
Proceedings
M. T. Bubak, T. Gubala, M. Kasztelnik, M. Malawski, P. Nowakowski, and P. M. A. Sloot.
Collaborative Virtual Laboratory for e-Health.
In:
Expanding the Knowledge Economy: Issues, Applications, Case Studies, eChallenges e-2007 Conference Proceedings.
pp. 537-544.
-
Proceedings
K. A. Semyanov, P. A. Tarasov, M. A. Yurkin, A. G. Hoekstra, and V. P. Maltsev.
Characterization of native red blood cell morphology by scanning flow cytometry.
In:
8th International Congress on Optical Particle Characterization.
p. 56.
-
Article
P. J. M. van Haastert and M. Postma.
Biased Random Walk by Stochastic Fluctuations of Chemoattractant-Receptor Interactions at the Lower Limit of Detection.
Biophysical Journal
pp. 1787-1796.
-
Proceedings
M. T. Bubak, D. Harezlak, P. Nowakowski, T. Gubala, and M. Malawski.
Appea: A Platform for Development and Execution of Grid Applications.
In: Expanding the Knowledge Economy: Issues, Applications, Case Studies, eChallenges e-2007 Conference Proceedings.
pp. 123-130.
-
Proceedings
M. Scarpa and R. G. Belleman.
An interaction framework for VR and AR applications.
In:
ASCI 2007, Proceedings of the 13th annual conference of the Advanced School for Computing and Imaging.
pp. 430-437.
-
Article
S. F. Portegies Zwart and E. P. J. van den Heuvel.
A runaway collision in a young star cluster as the origin of the brightest supernova.
Nature
pp. 388-389.
-
Proceedings
M. Malawski, T. Bartynski, E. Ciepiela, J. Kocot, P. Pelczar, and M. T. Bubak.
A new approach to supporting component applications on Grid.
In: Cracow '06 Grid Workshop, October 15-18, 2006.
pp. 328-336.
-
Article
A. Gualandris and S. F. Portegies Zwart.
A hypervelocity star from the Large Magellanic Cloud.
Monthly Notices of the Royal Astronomical Society
pp. L29-L33.
-
Article
K. Kruszynski, J. A. Kaandorp, and R. van Liere.
A computational method for quantifying morphological variation in scleractinian corals.
Coral reefs
pp. 831-840.
-
Proceedings
G. Ertaylan and P. M. A. Sloot.
A complex automata model of HIV-1 co-receptor tropism: Understanding mutation rate pressure.
In:
Reviews in Antiretroviral Therapy.
-
Article
S. L. W. McMillan, E. Vesperini, and S. F. Portegies Zwart.
A Dynamical Origin for Early Mass Segregation in Young Star Clusters.
Astrophysical Journal Letters
pp. L45-L49.
-
Proceedings
M. T. Bubak and S. Unger.
In: Cracow'06 Grid Workshop, Vol 2: K-Wf Grid: the knowledge-based workflow system for Grid applications: October 15--18, 2006 Cracow, Poland.
ISBN 978-83-915141-8-4.
-
Proceedings
W. Dubizky, A. Schuster, P. M. A. Sloot, M. Schroeder, and M. Romberg.
In:
Distributed, High-Performance and Grid Computing in Computational Biology.
ISBN
978-3-540-69841-8.
Lecture Notes in Computer Science
4360, pp. 1-190.
Publications of the CSL group