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Virtual Reactor: a distributed computing environment for simulation of plasma chemical processes on heterogeneous resources of the Grid.
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Using MOCCA Component Environment for Simulation of Gold Clusters.
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MSc Thesis
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W. Funika, P. Godowski, P. Pegiel, and M. T. Bubak.
Towards user-defined performance monitoring of distributed Java applications.
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Towards a Virtual Laboratory for fMRI Data Management and Analysis.
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B. Baliś, M. T. Bubak, J. Dziwisz, and K. Rozkwitalski.
Towards a Generic P2P Monitoring Infrastructure for Grid Resources and Applications.
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Towards Multiprotocol and Multilanguage Interoperability: Experiments with Babel and RMIX.
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Towards Distributed Monitoring and Performance Analysis Services in the K-WfGrid Project.
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The ultraluminous X-ray source in M82: an intermediate-mass black hole with a giant companion.
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M. V. Bogdanov, Y. E. Gorbachev, V. V. Krzhizhanovskaya, A. V. Kulik, M. S. Ramm, D. H. Ofengeim, D. E. Tarakanov, and A. V. Tsyrulnikov.
The processes of heat and mass transfer in modern semiconductor materials technology. Textbook for practical lessons in modeling and simulation.
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L. R. Yungelson, J.-P. Lasota, G. Nelemans, G. Dubus, E. P. J. van den Heuvel, J. Dewi, and S. Portegies Zwart.
The origin and fate of short-period low-mass black-hole binaries.
Astronomy & Astrophysics
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M. Gieles, H. J. G. L. M. Lamers, and S. Portegies Zwart.
The Oort problem solved.
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The MODEST questions: Challenges and future directions in stellar cluster research.
New Astronomy
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R. Wiersma, A. Sills, and S. F. Portegies Zwart.
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Astrophysical Journal
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S. F. Portegies Zwart, H. Baumgardt, S. L. W. McMillan, J. Makino, P. Hut, and T. Ebisuzaki.
The Ecology of Star Clusters and Intermediate-Mass Black Holes in the Galactic Bulge.
Astrophysical Journal
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T. Gubala, M. T. Bubak, and M. Malawski.
Support for automatic workflow composition based on ontologies in semantic Grid environment.
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Sterrenhopen in een Supercomputer.
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Spatial Stochastic Modelling of the phosphoenolpyruvate-dependent phosphotransferase (PTS) pathway in Escherichia coli.
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Software Environment for Simulation of Plasma-Chemical Deposition Reactors on Heterogeneous Computational Resources of the Grid.
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W. Rzasa, M. T. Bubak, B. Baliś, and T. Szepieniec.
Simulation method for estimation of security overhead of Grid applications.
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A. Gualandris.
Simulating self-gravitating systems on parallel computers.
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MSc Thesis
N. Sluijs.
Simulating Flow around a Complex Geometry.
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J. Grindlay, S. Portegies Zwart, and S. L. W. McMillan.
Short gamma-ray bursts from binary neutron star mergers in globular clusters.
Nature Physics
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T. Gubala, D. Harezlak, M. T. Bubak, and M. Malawski.
Semantic composition of scientific workflows based on the Petri nets formalism.
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L. Kirchev, M. Blyantov, V. Georgiev, K. Boyanov, M. Malawski, M. T. Bubak, S. Isaiadis, and V. S. Getov.
Security Models for Lightweight Grid Architectures.
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Reliability Analysis of Grid Resources: A User Perspective.
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Problem-Solving Environments for Simulation and Optimization on Heterogeneous Distributed Computational Resources of the Grid.
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Performance visualization in real time monitoring of Web service application.
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R. M. Badia, R. Sirvent, M. T. Bubak, W. Funika, C. Klus, P. Machner, and M. Smetek.
Performance Monitoring of Grid Superscalar with OCM-G/G-PM: Integration Issues.
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pp. 321-331.
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A. M. Artoli, A. G. Hoekstra, and P. M. A. Sloot.
Optimizing lattice Boltzmann simulations for unsteady flows.
Computers & fluids
pp. 227-240.
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K. A. Semyanov, A. E. Zharinov, P. A. Tarasov, M. A. Yurkin, I. G. Skribunov, D. R. van Bockstaele, A. G. Hoekstra, and V. P. Maltsev.
Optics of leucocytes.
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pp. 253-264.
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Chapter
P. A. Tarasov, M. A. Yurkin, P. A. Avrorov, K. A. Semyanov, A. G. Hoekstra, and V. P. Maltsev.
Optics of erythrocytes.
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pp. 231-246.
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Ondersteuning van wetenschappelijk onderzoek.
IT Monitor
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V. V. Krzhizhanovskaya, P. M. A. Sloot, and Y. E. Gorbachev.
Modeling of Plasma Chemical Deposition and Degradation of Silicon Thin Films.
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pp. 1347-1348.
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A. M. M. Artoli, A. G. Hoekstra, and P. M. A. Sloot.
Mesoscopic simulations of systolic flow in the Human abdominal aorta.
Journal of Biomechanics
pp. 873-884.
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D. C. Heggie, S. Portegies Zwart, and J. R. Hurley.
McScatter: A simple three-body scattering package with stellar evolution.
New Astronomy
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Mathematical modeling of calcium homeostasis in yeast cells.
Cell Calcium
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E. Vesperini, S. L. W. McMillan, and S. F. Portegies Zwart.
Mass segregation in young star clusters.
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K. E. Müller, O. V. Kaluzhnaya, S. I. Belikov, M. Rothenberger, H. C. Schröder, A. Reiber, J. A. Kaandorp, B. Manz, D. Mietchen, and F. Volke.
Magnetic resonance imaging of the siliceous skeleton of the demosponge Lubomirskia baicalensis.
Journal of Structural Biology
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L. Abrahamyan, J. M. Bernsdorf, T. Zeiser, P. Lammers, A. G. Hoekstra, and P. M. A. Sloot.
MPI parallelization and performance aspects of a graph based LB flow solver.
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R. M. Badia, O. Beckmann, S. Panagiotidi, M. T. Bubak, M. Malawski, D. Caromel, L. Henrio, N. Parlavantzas, V. S. Getov, S. Isaiadis, J. Thiyagalingam, and V. Lazarov.
Lightweight Grid Platform: Design Methodology.
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Lattice Boltzmann simulation of 2D and 3D non-Brownian suspensions in Couette flow.
Chemical Engineering Science
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H.-L. Truong, P. Brunner, T. Fahringer, F. Nerieri, R. Samborski, B. Baliś, M. T. Bubak, and K. Rozkwitalski.
K-WfGrid Distributed Monitoring and Performance Analysis Services for Workflows in the Grid.
In: International Conference on e-Science and Grid Computing.
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A. G. Hoekstra, B. Chopard, P. Lawford, R. Hose, M. Krafczyk, and J. M. Bernsdorf.
Introducing Complex Automata for Modelling Multi-Scale Complex Systems.
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Integrating of the OCM-G Monitoring System into the GRID Superscalar.
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pp. 124-130.
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Implementing microthreaded microprocessors in VHDL.
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M. Scarpa, R. G. Belleman, P. M. A. Sloot, and C. T. A. M. de Laat.
Highly interactive distributed visualization.
Future Generation Computer Systems
pp. 896-900.
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J. A. Kaandorp.
Groei en vorm van koralen & de invloed van atmosferische CO2 en stijgende zeetemperaturen.
Ecologie & Ontwikkeling
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PhD Thesis
K. J. Rycerz.
Grid-based HLA simulation support.
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K. J. Rycerz, M. T. Bubak, M. Malawski, and P. M. A. Sloot.
Grid support for HLA-based collaborative environment for vascular reconstruction.
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B. Baliś, M. T. Bubak, J. Dziwisz, K. Rozkwitalski, and S. Hurnik.
GEMINI -- a universal monitoring framework: concept, design, and first prototype: [abstract].
In: Cracow '05 Grid Workshop, November 20--23 2005.
pp. 122-123.
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P. M. A. Sloot, I. Altintas, M. T. Bubak, C. Boucher, and A. Tirado Ramos.
From Molecule to Man: Decision Support in Individualized E-Health.
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From Molecule to Man: Decision Support in Individualized E-Health.
Computer
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B. Baliś, M. T. Bubak, and K. Guzy.
Fine-grained instrumentation and monitoring of legacy applications in a service-oriented environment.
In: Cracow '05 Grid Workshop, November 20--23 2005.
pp. 158-159.
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B. Baliś, M. T. Bubak, and K. Guzy.
Fine-grained instrumentation and monitoring of legacy applications in a service-oriented environment.
In: Computational Science - ICCS 2006: 6th International Conference, Reading, UK, Proceedings, Part II.
pp. 542-548.
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Proceedings
M. Wegiel, M. T. Bubak, and B. Baliś.
Fine-Grain Interoperability with Legacy Libraries Virtualized as Web Services.
In: Proc. Grid-Enabling Legacy Applications and Supporting End Users Workshop within the framework 15th IEEE International Symposium on High Performance Distributed Computing (HPDC.15).
pp. 27-34.
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Proceedings
M. T. Bubak, M. Kasztelnik, C. Górka, M. Malawski, and T. Gubala.
Fault tolerance and data synchronization in Grid registry for workflow applications.
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p. 57.
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M. T. Bubak, M. Malawski, E. Richter-Was, G. Sala, and T. Szymocha.
Experiments with distributed training of neural networks on the Grid.
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p. 375.
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M. Malawski, M. T. Bubak, M. Placek, D. Kurzyniec, and V. S. Sunderam.
Experiments with distributed component computing across Grid boundaries.
In: Proceedings of the HPC-GECO/CompFrame workshop in conjunction with HPDC 2006.
pp. 109-116.
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H. Baumgardt, A. Gualandris, and S. F. Portegies Zwart.
Ejection of hypervelocity stars from the Galactic Centre by intermediate-mass black holes.
Monthly Notices of the Royal Astronomical Society
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H. Baumgardt, A. Gualandris, and S. F. Portegies Zwart.
Ejection of Hyper-Velocity Stars by Intermediate-Mass Black Holes.
Journal of Physics. Conference Series
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M. P. Muno, C. Law, J. S. Clark, S. M. Dougherty, R. de Grijs, S. F. Portegies Zwart, and F. Yusef-Zadeh.
Diffuse, Nonthermal X-Ray Emission from the Galactic Star Cluster Westerlund 1.
Astrophysical Journal
pp. 203-211.
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Article
I. V. Kolesnikova, S. V. Potapov, M. A. Yurkin, A. G. Hoekstra, V. P. Maltsev, and K. A. Semyanov.
Determination of volume, shape and refractive index of individual blood platelets.
Journal of Quantitative Spectroscopy & Radiative Transfer
pp. 37-45.
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Article
M. A. Yurkin, V. P. Maltsev, and A. G. Hoekstra.
Convergence of the discrete dipole approximation. II. An extrapolation technique to increase the accuracy.
Journal of the Optical Society of America. A, Optics, Image Science and Vision
pp. 2592-2601.
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Article
M. A. Yurkin, V. P. Maltsev, and A. G. Hoekstra.
Convergence of the discrete dipole approximation. I. Theoretical analysis.
Journal of the Optical Society of America. A, Optics, Image Science and Vision
pp. 2578-2591.
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V. V. Krzhizhanovskaya, V. V. Korkhov, A. Tirado-Ramos, D. J. Groen, I. V. Shoshmina, I. A. Valuev, I. V. Morozov, N. V. Malyshkin, Y. E. Gorbachev, and P. M. A. Sloot.
Computational Engineering on the Grid: Crafting a Distributed Virtual Reactor.
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Proceedings
A. Pentila, E. Zubko, K. Lumme, K. Muinonen, M. A. Yurkin, Y. Shkuratov, and A. G. Hoekstra.
Comparison between discrete dipole and exact techniques.
In:
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pp. 227-230.
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Proceedings
L. A. Naumov.
Comparision of Specialized Netwoking Protocols CTP (Commands Transfer Protocol) and IL (Internet Link).
In: Proceedings of XIII All-Russian Guidance Conference "Telematics-2006".
pp. 266-267.
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Article
E. V. Zudilova-Seinstra.
Combining desktop and virtual realities. Addressing demands of real life clinical environments.
Interfaces
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E. V. Zudilova-Seinstra and T. Adriaansen.
Combining Visualisation and Interaction to Facilitate Scientific Exploration and Discovery.
In: Proc. of the 20th BCS HCI Group conference in co-operation with ACM "HCI 2006: Engage!".
pp. 260-263.
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Proceedings
L. Abrahamyan, A. G. Hoekstra, and P. M. A. Sloot.
Choosing Optimal L-BGK Simulation Parameters for Time Harmonic Flows.
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Proceedings Discrete Simulation of Fluid Dynamics DSFD2006, Geneva, Switserland.
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Proceedings
M. A. Yurkin, V. P. Maltsev, and A. G. Hoekstra.
Can the Discrete Dipole Approximation Simulate Scattering of Particles with Size Parameter equal to 100?.
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pp. 279-282.
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V. Korkhov and V. V. Krzhizhanovskaya.
Benchmarking and Adaptive Load Balancing of the Virtual Reactor Application on the Russian-Dutch Grid.
Lecture Notes in Computer Science
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Article
J. A. Vrugt, B. Ó Nualláin, B. A. Robinson, W. Bouten, S. C. Dekker, and P. M. A. Sloot.
Application of parallel computing to stochastic parameter estimation in environmental models.
Computers & Geosciences
pp. 1139-1155.
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Proceedings
M. A. Yurkin, D. de Kanter, and A. G. Hoekstra.
Applicability of effective medium approximation to light scattering by granulated biological cells- first results.
In:
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pp. 46-47.
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Proceedings
K. Kruszynski, R. van Liere, and J. A. Kaandorp.
An Interactive Visualization System for Quantifying Coral Structures.
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pp. 1-8.
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M. A. Yurkin and A. G. Hoekstra.
An Extrapolation Technique to Increase the Accuracy of The Discrete Dipole Approximation.
In:
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pp. 283-286.
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M. Malawski, T. Bartynski, E. Ciepiela, J. Kocot, P. Pelczar, and M. T. Bubak.
An ADL-based Support for CCA Components on the Grid.
In: CoreGRID Workshop on Grid Systems, Tools and Environments in Conjunction with GRIDS@work: CoreGRID Conference, Grid Plugtests and Contest.
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Article
M. Min, J. W. Hovenier, C. Dominik, A. de Koter, and M. A. Yurkin.
Absorption and scattering properties of arbitrarily shaped particles in the Rayleigh domain: A rapid computational method and a theoretical foundation for the statistical approach.
Journal of Quantitative Spectroscopy & Radiative Transfer
pp. 161-180.
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Proceedings
S. D. Olabarriaga, A. Nederveen, J. G. Snel, and R. G. Belleman.
A Virtual Laboratory for fMRI Data Management and Analysis.
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MSc Thesis
N. Yang.
A Service-Oriented Visualization of Medical Data.
Supervised by E. V. Zudilova-Seinstra.
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M. P. Muno, J. S. Clark, P. A. Crowther, S. M. Dougherty, R. de Grijs, C. Law, S. L. W. McMillan, M. R. Morris, I. Negueruela, D. Pooley, S. F. Portegies Zwart, and F. Yusef-Zadeh.
A Neutron Star with a Massive Progenitor in Westerlund 1.
Astrophysical Journal Letters
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Proceedings
K. J. Rycerz, M. T. Bubak, M. Malawski, and P. M. A. Sloot.
A Grid Service for Management of Multiple HLA Federate Processes.
In:
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pp. 699-706.
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J. G. Snel, S. D. Olabarriaga, J. Alkemade, H. G. van Andel, A. J. Nederveen, C. B. Majoie, G. J. den Heeten, M. van Straten, and R. G. Belleman.
A Distributed Workflow Management System for Automated Medical Image Analysis and Logistics.
In:
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A. Tirado Ramos and P. M. A. Sloot.
A Conceptual Grid Architecture for Interactive Biomedical Applications.
In:
19th IEEE International Symposium on Computer-Based Medical Systems (CBMS'06).
pp. 762-767.
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Proceedings
V. N. Alexandrov, G. D. van Albada, P. M. A. Sloot, and J. Dongarra.
In:
Computational Science - ICCS 2006: 6th International Conference, Reading, UK, Proceedings, Part IV.
ISBN
978-3-540-34385-1.
Lecture Notes in Computer Science
3994.
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Proceedings
M. T. Bubak, M. Tura\la, and K. Wiatr.
In: Cracow '05 Grid Workshop, November 20--23 2005.
Publications of the CSL group