-
Proceedings
V. V. Krzhizhanovskaya, V. V. Korkhov, M. A. Zatevakhin, and Y. E. Gorbachev.
Parallel distributed computing in modeling of the nanomaterials production technologies.
In:
Proceedings of the International Conference on Parallel Computing Technologies (PaVT'2008), St. Petersburg, Russia.
ISBN
9785696037202.
pp. 585-590.
-
Proceedings
J. L. Guisado, F. Fernández de Vega, F. Jiménez Morales, K. A. Iskra, and P. M. A. Sloot.
Parallel Cellular Automata-based simulation of laser dynamics using dynamic load balancing.
In:
First International Workshop on Parallel Architectures and Bioinspired Algorithms.
ISBN
9788469165126.
pp. 49-55.
-
Article
M. B. N. Kouwenhoven, A. G. A. Brown, S. P. Goodwin, S. F. Portegies Zwart, and L. Kaper.
Pairing mechanisms for binary stars.
Astronomische Nachrichten
329(9-10), pp. 984-987.
-
Proceedings
M. Malawski, J. Kocot, E. Ciepiela, and M. Bubak.
Optimization of application execution in the ViroLab Virtual Laboratory.
In: Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings.
ISBN 9788391514191.
pp. 65-70.
-
Report
M. Malawski, J. Kocot, I. Ryszka, M. Bubak, M. Wieczorek, and T. Fahringer.
Optimization of application execution in the GridSpace environment.
-
Proceedings
M. Malawski, J. Kocot, I. Ryszka, M. Bubak, and M. Wieczorek.
Optimization of application execution in the GridSpace environment.
In: Integrated research in grid computing.
ISBN 9789605242602.
pp. 395-405.
-
Article
N. T. Faber, C. M. Boily, and S. F. Portegies Zwart.
On time-dependent orbital complexity in gravitational N-body simulations.
Monthly Notices of the Royal Astronomical Society
386(1), pp. 425-439.
-
Article
E. Gaburov, A. Gualandris, and S. Portegies Zwart.
On the onset of runaway stellar collisions in dense star clusters: I. Dynamics of the first collision.
Monthly Notices of the Royal Astronomical Society
384(1), pp. 376-385.
-
Article
L. R. Yungelson, E. P. J. van den Heuvel, J. S. Vink, S. F. Portegies Zwart, and A. de Koter.
On the evolution and fate of super-massive stars.
Astronomy & Astrophysics
477(1), pp. 223-237.
-
Proceedings
B. Chopard, J.-L. Falcone, R. Razakanirina, A. Hoekstra, and A. Caiazzo.
On the collision-propagation and gather-update formulations of a cellular automata rule.
In:
Cellular Automata.
ISBN
9783540799924.
pp. 144-151.
-
Proceedings
B. Chopard, J.-L. Falcone, R. Razakarinina, A. G. Hoekstra, and A. Caiazzo.
On the collision-propagation and gather-update formulations of a Cellular Automata rule.
In:
Cellular Automata, 8th International Conference on Cellular Automata for Reseach and Industry, ACRI 2008.
ISBN
978-3-540-79991-7.
Lecture Notes in Computer Science
5191, pp. 144-151.
-
Proceedings
W. Funika, M. Zientarski, R. M. Badia, J. Labarta, and M. Bubak.
OCM2PRV: performance visualization of Grid applications based on OCM-G and Paraver.
In: Integrated research in grid computing.
ISBN 9789605242602.
pp. 87-98.
-
Proceedings
D. J. W. Evans, A. G. Hoekstra, J. Gunn, D. Walker, D. R. Hose, R. H. Smallwood, B. Chopard, M. Krafczyk, J. M. Bernsdorf, and P. V. Lawford.
Multiscale Modelling: Application of the Complex Automata Simulation Technique (COAST).
In:
Proceedings of the European Biomechanics Society conference 2008.
-
Article
D. J. W. Evans, A. Hoekstra, J. Gunn, D. Walker, D. R. Hose, R. H. Smallwood, B. Chopard, M. Krafczyk, J. Bernsdorf, and P. V. Lawford.
Multiscale Modelling: Application of the Complex Automata Simulation Technique (COAST).
Journal of Biomechanics
41(S1), p. 482.
-
MSc Thesis
L. Y. L. Muller.
Multi-touch displays: design, applications and performance evaluation.
Supervised by
R. G. Belleman.
-
Article
P. Sloot, P. Coveney, M. T. Bubak, A.-M. Vandamme, B. Ó Nualláin, D. van de Vijver, and C. Boucher.
Multi-science decision support for HIV drug resistance treatment.
Studies in Health Technology and Informatics
138, pp. 188-198.
-
Proceedings
A. G. Hoekstra, J.-L. Falcone, A. Caiazzo, and B. Chopard.
Multi-scale modeling with cellular automata: The complex automata approach.
In:
Cellular Automata.
ISBN
9783540799924.
pp. 192-199.
-
Article
B. Balis, M. Bubak, and B. Łabno.
Monitoring of Grid scientific workflows.
Scientific Programming
16(2-3), pp. 205-216.
-
Article
J. A. Kaandorp, J. G. Blom, J. Verhoef, M. Filatov, M. Postma, and W. E. G. Müller.
Modelling genetic regulation of growth and form in a branching sponge.
Proceedings of the Royal Society B-Biological Sciences
275(1651), pp. 2569-2575.
-
MSc Thesis
R. Quax.
Modeling and Simulating the Propagation of Infectious Diseases Using Complex Networks.
Supervised by
David Bader.
-
Article
E. Gaburov, J. C. jr. Lombardi, and S. Portegies Zwart.
Mixing in massive stellar mergers.
Monthly Notices of the Royal Astronomical Society. Letters
383(1), pp. L5-L9.
-
MSc Thesis
A. Sottoriva.
Mathematical Modeling of Tumour Growth and Invasion Using a Hybrid Cellular Automaton.
Supervised by
P. M. A. Sloot and L. Vermeulen.
-
Article
D. Y. Orlova, M. A. Yurkin, A. G. Hoekstra, and V. P. Maltsev.
Light scattering by neutrophils: Model, simulation, and experiment.
Journal of Biomedical Optics
13(5), p. 054057.
-
Article
B. Baliś, M. Bubak, and M. Wegiel.
LGF: A flexible framework for exposing legacy codes as services.
Future Generation Computer Systems
24(7), pp. 711-719.
-
Proceedings
T. Bartyński, M. Malawski, and M. Bubak.
Invocation of Grid operations in the ViroLab Virtual Laboratory.
In: Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings.
ISBN 9788391514191.
pp. 59-64.
-
Proceedings
T. Szepieniec and M. Bubak.
Investigation of the DAG eligible jobs maximization algorithm in a grid.
In: Grid 2008: proceedings of the 2008 9th IEEE/ACM International Conference on Grid Computing: September 29th-October 1st, 2008, Tsukuba, Japan.
ISBN 9781424425785.
pp. 340-345.
-
Proceedings
A. Belloum, Z. Zhao, and M. Bubak.
International Workshop on Applications of Workflows in Computational Science (AWCS 08).
In: Computational Science – ICCS 2008.
ISBN 9783540693895.
III, pp. 459-462.
-
Proceedings
M. Assel, P. Nowakowski, and M. Bubak.
Integrating and accessing medical data resources within the ViroLab Virtual Laboratory.
In: Computational Science – ICCS 2008.
ISBN 9783540693895.
III, pp. 90-99.
-
Article
V. V. Gvaramadze, A. Gualandris, and S. Portegies Zwart.
Hyperfast pulsars as the remnants of massive stars ejected from young star clusters.
Monthly Notices of the Royal Astronomical Society
385(2), pp. 929-938.
-
Proceedings
M. Malawski, T. Gubała, M. Kasztelnik, T. Bartynski, and M. Bubak.
High-level scripting approach for building component-based applications on the Grid.
In: Making grids work: Proceedings of the CoreGRID Workshop on Programming Models, Grid and P2P System Architecture, Grid Systems, Tools and Environments, 12-13 June 2007, Heraklion, Crete, Greece.
ISBN 9780387784472.
pp. 309-321.
-
Article
R. G. Belleman, J. Bédorf, and S. F. Portegies Zwart.
High performance direct gravitational N-body simulations on graphics processing units II: An implementation in CUDA.
New Astronomy
13(2), pp. 103-112.
-
Article
J. A. van Meel, A. Arnold, D. Frenkel, S. F. Portegies Zwart, and R. G. Belleman.
Harvesting graphics power for MD simulations.
Molecular Simulation
34(3), pp. 259-266.
-
Proceedings
K. Rycerz, M. Bubak, and P. M. A. Sloot.
HLA component model on the example of multiscale simulation.
In:
Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings.
ISBN
9788391514191.
pp. 272-275.
-
Report
K. Rycerz, M. Bubak, P. M. A. Sloot, and V. Getov.
HLA component based environment for distributed multiscale simulations.
-
Proceedings
K. Rycerz, M. Bubak, and P. M. A. Sloot.
HLA component based environment for distributed multiscale simulations.
In:
From grids to service and pervasive computing.
ISBN
9780387094540.
pp. 229-239.
-
Article
H.-C. Huang, A. Konagaya, V. Lanza, and P. M. A. Sloot.
Guest Editorial Introduction to the Special Section on BioGrid: Biomedical Computations on the Grid.
IEEE Transactions on Information Technology in Biomedicine
12(2), pp. 133-137.
-
Chapter
A. Tirado-Ramos, P. M. A. Sloot, and M. Bubak.
Gridbased interactive decision support in biomedicine.
In:
Grid computing for bioinformatics and computational biology.
ISBN
9780471784098.
pp. 225-246.
-
Proceedings
E. Ciepiela, J. Kocot, T. Gubala, M. Malawski, M. Kasztelnik, and M. Bubak.
GridSpace Engine of the ViroLab Virtual Laboratory.
In: Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings.
ISBN 9788391514191.
pp. 53-58.
-
Proceedings
J. K. Rath, A. D. Verkerk, M. Brinza, R. E. I. Schropp, W. J. Goedheer, V. V. Krzhizhanovskaya, Y. E. Gorbachev, K. E. Orlov, E. M. Khilkevitch, and A. S. Smirnov.
Gas phase considerations for the deposition of thin film silicon solar cells by VHF-PECVD at low substrate temperatures.
In:
Proceedings of the 33rd IEEE Photovoltaic Specialists Conference, San Diego, California.
ISBN
9781424416400.
-
Proceedings
J. K. Rath, A. Verkerk, M. Brinza, R. E. I. Schropp, W. J. Goedheer, V. V. Krzhizhanovskaya, Y. E. Gorbachev, K. E. Orlov, E. M. Khilkevitch, and A. S. Smirnov.
Gas phase considerations for the deposition of thin film silicon cells by VHF-PECVD at low substrate temperatures.
In:
Proceedings of 33rd IEEE Photovoltaic Specialists Conference.
-
Proceedings
S. Murtaza, A. G. Hoekstra, and P. M. A. Sloot.
Floating point based Cellular Automata simulations using a dual FPGA-enabled system.
In:
2008 Second International Workshop on High-Performance Reconfigurable Computing Technology and Applications (HPRCTA): proceedings: held in conjunction with SC 08, Austin, TX, November 17, 2008.
ISBN
9781424428267.
-
Article
J. A. Kaandorp.
Exploring theoretical morphospaces [Review of: G.R. McGhee (2006) The geometry of evolution: adaptive landscapes and theoretical morphospaces].
BioScience
58(3), pp. 271-272.
-
Other: misc
J. A. Kaandorp.
Exploring Theoretical Morphospaces, Book review: The Geometry of Evolution: Adaptive Landscapes and Theoretical Morphospaces. George R. McGhee.
BioScience
58, pp. 271-273.
-
Article
A. Gualandris, S. Harfst, D. Merritt, and S. Mikkola.
Evolution of stellar orbits in the galactic centre.
Astronomische Nachrichten
329(9-10), pp. 1008-1011.
-
Proceedings
T. Szepieniec and M. Bubak.
Evaluation of eligible jobs maximization algorithm for DAG scheduling in grids.
In: Computational Science – ICCS 2008.
ISBN 9783540693840.
I, pp. 254-263.
-
Article
A. V. Chernyshev, P. A. Tarasov, K. A. Semianov, V. M. Nekrasov, A. G. Hoekstra, and V. P. Maltsev.
Erythrocyte lysis in isotonic solution of ammonium chloride: Theoretical modelling and experimental verification.
Journal of Theoretical Biology
251(1), pp. 93-107.
-
Proceedings
A. Caiazzo, J. L. Falcone, B. Chopard, and A. G. Hoekstra.
Error investigations in complex automata models for reaction-diffusion systems.
In:
Cellular Automata.
ISBN
9783540799924.
pp. 260-267.
-
Proceedings
W. Funika, D. Harężlak, D. Król, and M. Bubak.
Environment for collaborative development and execution of Virtual Laboratory applications.
In: Computational Science – ICCS 2008.
ISBN 9783540693895.
III, pp. 446-455.
-
MSc Thesis
J. B. W. Geerdink.
Entropic and multiple relaxation time lattice Boltzmann methods compared for time harmonic flows.
Supervised by
A. G. Hoekstra.
-
Article
B. Ó Nualláin, D. van de Vijver, C. Boucher, A. Tirado Ramos, and P. Sloot.
Enhanced decision support for HIV drug resistance interpretation.
Reviews in Antiviral Therapy
2008-2.
-
Proceedings
B. Ó Nualláin, D. A. M. C. van de Vijver, C. A. B. Boucher, A. Tirado Ramos, and P. M. A. Sloot.
Enhanced Decision Support for HIV Drug Resistance Interpretation.
In:
Proceedings of the 6th European HIV Drug Resistance Workshop.
-
Article
S. L. Moll, R. de Grijs, P. Anders, P. A. Crowther, S. S. Larsen, L. J. Smith, and S. F. Portegies Zwart.
Dynamical mass of a star cluster in M 83: A test of fibre-fed multi-object spectroscopy.
Astronomy & Astrophysics
490(1), pp. 125-133.
-
Article
Y. Demchenko, O. Mulmo, L. Gommans, C. de Laat, and A. Wan.
Dynamic security context management in Grid-based applications.
Future Generation Computer Systems
24(5), pp. 434-441.
-
Proceedings
K. Rycerz, M. Bubak, and P. M. A. Sloot.
Dynamic interactions in HLA component model for multiscale simulations.
In:
Computational Science – ICCS 2008.
ISBN
9783540693871.
II, pp. 217-226.
-
Proceedings
K. J. Rycerz, P. M. A. Sloot, and M. T. Bubak.
Dynamic Interactions in HLA Component Model for Multiscale Simulations.
In:
Computational Science - ICCS 2008: 8th International Conference, Krakow, Poland, Proceedings, Part II.
ISBN
978-3-540-69386-4.
Lecture Notes in Computer Science
5102, pp. 217-226.
-
Article
D. Groen, S. Portegies Zwart, S. McMillan, and J. Makino.
Distributed N-body simulation on the grid using dedicated hardware.
New Astronomy
13(5), pp. 348-358.
-
Proceedings
M. Kasztelnik, T. Gubała, M. Malawski, and M. Bubak.
Development and execution of collaborative application on the ViroLab virtual laboratory.
In: Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings.
ISBN 9788391514191.
pp. 41-46.
-
Book
M. Bubak, M. Turała, and K. Wiatr.
Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings.
ISBN 9788391514191.
-
Book
M. Bubak, G. D. van Albada, J. Dongarra, and P. M. A. Sloot.
Computational Science – ICCS 2008.
ISBN
9783540693895.
III.
-
Book
M. Bubak, G. D. van Albada, J. Dongarra, and P. M. A. Sloot.
Computational Science – ICCS 2008.
ISBN
9783540693840.
I.
-
Book
M. Bubak, G. D. van Albada, J. Dongarra, and P. M. A. Sloot.
Computational Science – ICCS 2008.
ISBN
9783540693871.
II.
-
Article
C. H. Liu, A. K. Satoh, M. Postma, J. Huang, D. F. Ready, and R. C. Hardie.
Ca2+-dependent metarhodopsin inactivation mediated by calmodulin and NINAC myosin III.
Neuron
59(5), pp. 778-789.
-
Other: misc
J. A. Kaandorp.
Book review: P. Pelce, New visions on growth and form: fingering growth, dendrites, and flames.
Mathematical Biosciences
in press.
-
Other: misc
A. G. Hoekstra.
Book review: Optical Polarization in Biomedical Applications, V.V. Tuchin, L.V. Wang, D.A. Zimnyakov.
Journal of Quantitative Spectroscopy \& Radiative Transfer
109, pp. 531-531.
-
Article
X. Wang, A. Boreiko, U. Schloßmacher, D. Brandt, H. C. Schröder, J. Li, J. A. Kaandorp, H. Götz, H. Duschner, and W. E. G. Müller.
Axial growth of hexactinellid spicules: Formation of cone-like structural units in the giant basal spicules of the hexactinellid Monorhaphis.
Journal of Structural Biology
164(3), pp. 270-280.
-
Proceedings
M. A. Yurkin, M. Min, and A. G. Hoekstra.
Application of the discrete dipole approximation to extreme refractive indices: Filtered coupled dipoles revived.
In:
11th Electromagnetic & Light Scattering Conference: Extended abstracts: 7-12 September 2008, de Havilland Campus, University of Hertfordshire.
pp. 109-112.
-
Proceedings
M. Bubak, D. Harezlak, P. Nowakowski, T. Gubala, and M. Malawski.
Appea: a framework for the design and development of business applications on the Grid.
In: Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings.
ISBN 9788391514191.
pp. 220-225.
-
Proceedings
B. Baliś and M. Bubak.
An ontology model for execution records of Grid scientific applications.
In: Proceedings of the Fourth International Conference on Semantics, Knowledge and Grid: December 3-5, 2008, Beijing, China.
ISBN 9780769534015.
pp. 34-41.
-
Proceedings
B. Kowalewski, M. Bubak, and B. Baliś.
An event-based approach to reducing coupling in large-scale applications.
In: Computational Science – ICCS 2008.
ISBN 9783540693895.
III, pp. 358-367.
-
Proceedings
J. Hegewald, M. Krafczyk, J. Tölke, A. Hoekstra, and B. Chopard.
An agent-based coupling platform for complex automata.
In:
Computational Science – ICCS 2008.
ISBN
9783540693871.
II, pp. 227-233.
-
Book
S. Gorlatch, M. Bubak, and T. Priol.
Achievements in European research on Grid systems: CoreGRID Integration Workshop 2006 (selected papers), October 19-20, Krakow, Poland.
ISBN 9780387728117.
-
PhD Thesis
-
Proceedings
M. Malawski, T. Bartyński, and M. Bubak.
A tool for building collaborative applications by invocation of Grid Operations.
In: Computational Science – ICCS 2008.
ISBN 9783540693895.
III, pp. 243-252.
-
MSc Thesis
D. M. Chu.
A survey of classical simulation methods for quantum computation.
Supervised by H. Buhrman and R. de Wolf.
-
Article
S. Portegies Zwart, S. McMillan, D. Groen, A. Gualandris, M. Sipior, and W. Vermin.
A parallel gravitational N-body kernel.
New Astronomy
13(5), pp. 285-295.
-
Proceedings
S. Portegies Zwart, S. McMillan, B. Ó Nualláin, D. Heggie, J. Lombardi, P. Hut, S. Banerjee, H. Belkus, T. Fragos, J. Fregeau, M. Fuji, E. Gaburov, E. Glebbeek, D. Groen, S. Harfst, R. Izzard, M. Jurić, S. Justham, P. Teuben, J. van Bever, O. Yaron, and M. Zemp.
A multiphysics and multiscale software environment for modeling astrophysical systems.
In: Computational Science – ICCS 2008.
ISBN 9783540693871.
II, pp. 207-216.
-
Article
Z. Guo, P. M. A. Sloot, and J. C. Tay.
A hybrid agent-based approach for modeling microbiological systems.
Journal of Theoretical Biology
255(2), pp. 163-175.
-
Article
S. Harfst, A. Gualandris, D. Merritt, and S. Mikkola.
A hybrid N-body code incorporating algorithmic regularization and post-Newtonian forces.
Monthly Notices of the Royal Astronomical Society
389(1), pp. 2-12.
-
Article
V. V. Korkhov, V. V. Krzhizhanovskaya, and P. M. A. Sloot.
A grid-based virtual reactor: Parallel performance and adaptive load balancing.
Journal of Parallel and Distributed Computing
68(5), pp. 596-608.
-
Proceedings
A. Wibisono, Z. Zhao, A. Belloum, and M. Bubak.
A framework for interactive parameter sweep applications.
In: Computational Science – ICCS 2008.
ISBN 9783540693895.
III, pp. 481-490.
-
MSc Thesis
M. V. Filatov.
A compression-based group similarity measure with applications in phylogeny. Automatic detection of viral RNA recombination..
Supervised by B. Ó Nualláin.
-
Proceedings
G. Ertaylan and P. M. A. Sloot.
A complex automata model of HIV-1 co-receptor tropism: Mutation rate prediction.
In:
Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings.
ISBN
9788391514191.
p. 85.
-
Proceedings
B. Łabno, M. Bubak, and B. Baliś.
A P2P approach to resource discovery in on-line monitoring of Grid workflows.
In: Euro-Par 2008 – Parallel Processing.
ISBN 9783540854517.
pp. 37-46.
-
Proceedings
M. T. Bubak, G. D. van Albada, J. Dongarra, and P. M. A. Sloot.
In:
Computational Science - ICCS 2008: 8th International Conference, Krakow, Poland, Proceedings, Part I.
ISBN
978-3-540-69383-3.
Lecture Notes in Computer Science
5101.
-
Proceedings
M. T. Bubak, G. D. van Albada, J. Dongarra, and P. M. A. Sloot.
In:
Computational Science - ICCS 2008: 8th International Conference, Krakow, Poland, Proceedings, Part II.
ISBN
978-3-540-69386-4.
Lecture Notes in Computer Science
5102.
-
Proceedings
M. T. Bubak, G. D. van Albada, J. Dongarra, and P. M. A. Sloot.
In:
Computational Science - ICCS 2008: 8th International Conference, Krakow, Poland, Proceedings, Part III.
ISBN
978-3-540-69388-8.
Lecture Notes in Computer Science
5103.