-
Article
A. P. Bhati, A. Hoti, A. Potterton, M. K. Bieniek, and P. V. Coveney.
Long Time Scale Ensemble Methods in Molecular Dynamics: Ligand-Protein Interactions and Allostery in SARS-CoV-2 Targets.
Journal of Chemical Theory and Computation
19(11), pp. 3359-3378.
-
Article
A. Gabel, V. Klein, R. Valperga, J. S. W. Lamb, K. Webster, R. Quax, and E. Gavves.
Learning Lie Group Symmetry Transformations with Neural Networks.
Proceedings of Machine Learning Research
221, pp. 50-59.
-
Article
J. L. Suter, M. Vassaux, and P. V. Coveney.
Large-scale molecular dynamics elucidates the mechanics of reinforcement in graphene-based composites.
Advanced materials
35(35), e2302237.
-
Article
S. Kakhaia, P. Zun, D. Ye, and V. Krzhizhanovskaya.
Inverse uncertainty quantification of a mechanical model of arterial tissue with surrogate modelling.
Reliability Engineering & System Safety
238, 109393.
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Article
W. Barfuss and J. M. Meylahn.
Intrinsic fluctuations of reinforcement learning promote cooperation.
Scientific Reports
13, 1309.
-
Article
C. J. Spieker, G. Závodszky, C. Mouriaux, P. H. Mangin, and A. G. Hoekstra.
Initial platelet aggregation in the complex shear environment of a punctured vessel model.
Physics of Fluids
35(7), 071904.
-
Proceedings
A. Fuertes Blanco, Z. Shi, D. Roy, and Z. Zhao.
Improving the Resiliency of Decentralized Crowdsourced Blockchain Oracles.
In:
Computational Science – ICCS 2023.
ISBN
9783031359958.
I, pp. 3-17.
-
Article
K. Ly, Y. Kashnitsky, S. Chamezopoulos, and V. Krzhizhanovskaya.
Improving Article Classification with Edge-Heterogeneous Graph Neural Networks.
-
Article
Y. Hao, G. Závodszky, C. Tersteeg, M. Barzegari, and A. G. Hoekstra.
Image-based flow simulation of platelet aggregates under different shear rates.
PLoS Computational Biology
19(7), e1010965.
-
Article
Haibin Qian, Selami Baglamis, Fumei Redeker, Julia Raaijman, Ron A. Hoebe, Vivek M. Sheraton, Louis Vermeulen, and Przemek M. Krawczyk.
High-Content and High-Throughput Clonogenic Survival Assay Using Fluorescence Barcoding.
Cancers
15(19), 4772.
-
Article
J. W. S. McCullough and P. V. Coveney.
High resolution simulation of basilar artery infarct and flow within the circle of Willis.
Scientific Reports
13, 21665.
-
Proceedings
V. Bazyleva, V. M. Garibay, and D. Roy.
Global Sensitivity Analysis Using Polynomial Chaos Expansion on the Grassmann Manifold.
In:
Computational Science – ICCS 2023.
ISBN
9783031360305.
V, pp. 583-597.
-
Article
D. Groen, H. Arabnejad, D. Suleimenova, W. Edeling, Erwan Raffin, Y. Xue, K. Bronik, N. Monnier, and P. V. Coveney.
FabSim3: An automation toolkit for verified simulations using high performance computing.
Computer Physics Communications
283, 108596.
-
Article
J. F. Uleman, R. J. F. Melis, A. G. Hoekstra, M. G. M. Olde Rikkert, and R. Quax.
Exploring the potential impact of multi-factor precision interventions in Alzheimer's disease with system dynamics.
Journal of Biomedical Informatics
145, 104462.
-
Article
S. Wan, A. P. Bhati, A. D. Wade, and P. V. Coveney.
Ensemble-Based Approaches Ensure Reliability and Reproducibility.
Journal of Chemical Information and Modeling
63(22), pp. 6959-6963.
-
Proceedings
M. H. N. Yousefi, V. Degeler, and A. Lazovik.
Empowering Machine Learning Development with Service-Oriented Computing Principles.
In: Service-Oriented Computing - 17th Symposium and Summer School, SummerSOC 2023, Revised Selected Papers.
ISBN 9783031457289.
pp. 24-44.
-
Article
A. R. Schuurman, P. M. A. Sloot, W. J. Wiersinga, and T. van der Poll.
Embracing complexity in sepsis.
Critical Care
27, 102.
-
Article
I. Zacharoudiou, J. W. S. McCullough, and P. V. Coveney.
Development and performance of a HemeLB GPU code for human-scale blood flow simulation.
Computer Physics Communications
282(108548), 108548.
-
Proceedings
J. Nevin, P. Groth, and M. Lees.
Data Integration Landscapes.
In:
Computational Science – ICCS 2023.
ISBN
9783031359958.
I, pp. 494-508.
-
Article
J. R. Helmus and R. Wolbertus.
Cooperative behaviour at public electric vehicle charging stations.
Travel Behaviour and Society
32, 100572.
-
PhD Thesis
K. van der Zwet.
Computational models of emergent organisation in conflict environments.
ISBN
9789464731811.
Supervised by
P. M. A. Sloot, T. M. van Engers, and A. I. Barros.
-
Article
S. Wan, A. P. Bhati, and P. V. Coveney.
Comparison of Equilibrium and Nonequilibrium Approaches for Relative Binding Free Energy Predictions.
Journal of Chemical Theory and Computation
19(21), pp. 7846-7860.
-
Proceedings
J. Kwak, M. H. Lees, and W. Cai.
Characterization of Pedestrian Contact Interaction Trajectories.
In:
Computational Science – ICCS 2023.
ISBN
9783031359958.
I, pp. 18-32.
-
Article
A. Mutlu, D. Roy, and T. Filatova.
Capitalized value of evolving flood risks discount and nature-based solution premiums on property prices.
Ecological Economics
205, 107682.
-
Proceedings
J. van Dijk, G. Zavodszky, A.-L. Varbanescu, A. D. Pimentel, and A. Hoekstra.
Building a Fine-Grained Analytical Performance Model for Complex Scientific Simulations.
In:
Parallel Processing and Applied Mathematics.
ISBN
9783031304422.
I, pp. 183-196.
-
Article
R. A. Manzuk, A. C. Maloof, J. A. Kaandorp, and M. Webster.
Branching archaeocyaths as ecosystem engineers during the Cambrian radiation.
Geobiology
21(1), pp. 66-85.
-
Article
T. Weaving, A. Ralli, W. M. Kirby, P. J. Love, S. Succi, and P. V. Coveney.
Benchmarking noisy intermediate scale quantum error mitigation strategies for ground state preparation of the HCl molecule.
Physical Review Research
5(4), 043054.
-
Article
Rémy Petkantchin, Alexandre Rousseau, Omer Eker, Karim Zouaoui Boudjeltia, Franck Raynaud, Bastien Chopard, Alfons Hoekstra, Raymond Padmos, Victor Azizi, Claire Miller, and Max van der Kolk.
Author Correction: A simplified mesoscale 3D model for characterizing fibrinolysis under flow conditions.
Scientific Reports
13, 20369.
-
Article
L. Wang, A. C. Pronk, E. P. van Poelgeest, R. Briggs, J. A. H. R. Claassen, S. Jansen, M. Klop, F. J. de Lange, C. C. G. M. Meskers, V. J. J. Odekerken, S. J. Payne, M. C. Trappenburg, R. D. Thijs, J. F. Uleman, A. G. Hoekstra, and N. van der Velde.
Applying systems thinking to unravel the mechanisms underlying orthostatic hypotension related fall risk.
GeroScience
45(4), pp. 2743-2755.
-
Article
J. Nevin, P. Groth, and M. Lees.
An approach for analysing the impact of data integration on complex network diffusion models.
Journal of complex networks
11(4), cnad025.
-
Article
T. Weaving, A. Ralli, W. M. Kirby, A. Tranter, P. J. Love, and P. V. Coveney.
A stabilizer framework for the Contextual Subspace Variational Quantum Eigensolver and the noncontextual projection ansatz.
Journal of Chemical Theory and Computation
19(3), pp. 808-821.
-
Article
R. Petkantchin, A. Rousseau, O. Eker, K. Zouaoui Boudjeltia, F. Raynaud, B. Chopard, A. Hoekstra, R. Padmos, V. Azizi, C. Miller, and M. van der Kolk.
A simplified mesoscale 3D model for characterizing fibrinolysis under flow conditions.
Scientific Reports
13, 13681.
-
Article
A. O. Rydin, Y. Milaneschi, R. Quax, J. Li, J. A. Bosch, R. A. Schoevers, E. J. Giltay, B. W. J. H. Penninx, and F. Lamers.
A network analysis of depressive symptoms and metabolomics.
Psychological Medicine
53(15), pp. 7385-7394.
-
Article
V. Yildirim, V. M. Sheraton, R. Brands, L. Crielaard, R. Quax, N. A. W. van Riel, K. Stronks, M. Nicolaou, and P. M. A. Sloot.
A data-driven computational model for obesity-driven diabetes onset and remission through weight loss.
iScience
26(11), 108324.
-
Proceedings
A. Koloi, V. S. Loukas, A. Sakellarios, J. A. Bosch, R. Quax, K. Nowakowska, N. Tachos, J. Kaźmierski, C. Papaloukas, and D. Fotiadis.
A comparison study on creating simulated patient data for individuals suffering from chronic coronary disorders.
In:
2023 45th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC).
ISBN
9798350324471.
pp. 3630-3633.
-
Article
J. Hoencamp, S. Jain, and D. Kandhai.
A Semi-Static Replication Method for Bermudan Swaptions under an Affine Multi-Factor Model.
Risks
11(10), 168.
-
Proceedings
Selami Baglamis, Joyaditya Saha, Maartje van der Heijden, Dani Ë. L. M. Miedema, D. É. Mi. van Gent, Przemek M. Krawczyk, Louis Vermeulen, and Vivek M. Sheraton.
A Novel High-Throughput Framework to Quantify Spatio-Temporal Tumor Clonal Dynamics.
In: Computational Science – ICCS 2023.
ISBN 9783031360237.
III, pp. 345-359.
-
Article
Z. Qiu, B. Espinoza, V. V. Vasconcelos, C. Chen, S. M. Constantino, S. A. Crabtree, L. Yang, A. Vullikanti, J. Chen, J. Weibull, K. Basu, A. Dixit, S. A. Levin, and M. V. Marathe.
Understanding the coevolution of mask wearing and epidemics.
Proceedings of the National Academy of Sciences
119(26), e2123355119.
-
Article
J. Helmus, M. Lees, and R. van den Hoed.
Understanding Complexity in Charging Infrastructure through the Lens of Social Supply–Demand Systems.
World Electric Vehicle Journal
13(3), 44.
-
Article
D. Ye, P. Zun, V. Krzhizhanovskaya, and A. G. Hoekstra.
Uncertainty quantification of a three-dimensional in-stent restenosis model with surrogate modelling.
Journal of the Royal Society Interface
19(187), 20210864.
-
Article
A. A. Yakusheva, K. R. Butov, G. A. Bykov, G. Závodszky, A. Eckly, F. I. Ataullakhanov, C. Gachet, M. A. Panteleev, and P. H. Mangin.
Traumatic vessel injuries initiating hemostasis generate high shear conditions.
Blood Advances
6(16), pp. 4834-4846.
-
Proceedings
M. Lotfian Delouee, B. Koldehofe, and V. Degeler.
Towards adaptive quality-aware Complex Event Processing in the Internet of Things.
In: 2022 18th International Conference on Mobility, Sensing and Networking : MSN 2022.
ISBN 9781665464574.
pp. 571-575.
-
Article
B. Czaja, J. de Bouter, M. Heisler, G. Závodszky, S. Karst, M. Sarunic, D. Maberley, and A. Hoekstra.
The effect of stiffened diabetic red blood cells on wall shear stress in a reconstructed 3D microaneurysm.
Computer methods in biomechanics & biomedical engineering
25(15), pp. 1691-1709.
-
Article
J. H. Hoencamp, J. P. de Kort, and B. D. Kandhai.
The Impact of Stochastic Volatility on Initial Margin and MVA for Interest Rate Derivatives.
Applied Mathematical Finance
29(2), pp. 141-179.
-
Article
P. P. M. van Zuijlen, H. I. K. Korkmaz, V. M. Sheraton, T. M. Haanstra, A. Pijpe, A. de Vries, C. H. van der Vlies, E. Bosma, E. de Jong, E. Middelkoop, F. J. Vermolen, and P. M. A. Sloot.
The Future of Burn Care From a Complexity Science Perspective.
Journal of Burn Care & Research
43(6), pp. 1312-1321.
-
PhD Thesis
-
Report
L. Quinlan, M. Reeves, D. Purser, S. Levin, and V. V. Vasconcelos.
Strategies of Change.
-
Article
L. Yang, S. M. Constantino, B. T. Grenfell, E. U. Weber, S. A. Levin, and V. V. Vasconcelos.
Sociocultural determinants of global mask-wearing behavior.
Proceedings of the National Academy of Sciences
119(41), e2213525119.
-
Proceedings
R. Riesebos, V. Degeler, and A. Tello.
Smartphone-Based Real-Time Indoor Positioning Using BLE Beacons.
In: 2022 IEEE 18th International Conference on Automation Science and Engineering (CASE 2022).
ISBN 9781665490429.
pp. 1281-1288.
-
Proceedings
B. Su, J. Kwak, A. R. Pourghaderi, M. H. Lees, K. B. K. Tan, S. Y. Loo, I. S. Y. Chua, J. L. J. Quah, W. Cai, and M. E. H. Ong.
Simulation-Based Analysis of Evacuation Elevator Allocation for a Multi-Level Hospital Emergency Department.
In:
Proceedings of the 2022 Winter Simulation Conference.
ISBN
9781665476614.
pp. 358-369.
-
Article
V. V. Vasconcelos, S. M. Constantino, A. Dannenberg, M. Lumkowsky, E. Weber, and S. Levin.
Segregation and clustering of preferences erode socially beneficial coordination.
IAS Review
3, 3.2.
-
Article
H. I. Korkmaz, F. B. Niessen, A. Pijpe, V. M. Sheraton, F. J. Vermolen, P. A. J. Krijnen, H. W. M. Niessen, P. M. A. Sloot, E. Middelkoop, S. Gibbs, and P. P. M. van Zuijlen.
Scar formation from the perspective of complexity science.
Journal of Wound Care
31(2), pp. 178-184.
-
Article
C. Ramírez-Portilla, I. M. Bieger, R. G. Belleman, T. Wilke, J.-F. Flot, A. H. Baird, S. Harii, F. Sinniger, and J. A. Kaandorp.
Quantitative three-dimensional morphological analysis supports species discrimination in complex-shaped and taxonomically challenging corals.
Frontiers in Marine Science
9, 955582.
-
Article
V. V. Vasconcelos, A. Dannenberg, and S. A. Levin.
Punishment institutions selected and sustained through voting and learning.
Nature Sustainability
5(7), p. 578–585.
-
Proceedings
-
Proceedings
-
Proceedings
-
Proceedings
-
Article
K. B. S. Huth, A. Finnemann, M. W. J. van den Ende, and P. M. A. Sloot.
No robust relation between larger cities and depression.
Proceedings of the National Academy of Sciences
119(2), e2118943118.
-
Article
G. Spini, E. Mancini, T. Attema, M. Abspoel, J. de Gier, S. Fehr, T. Veugen, M. van Heesch, D. Worm, A. De Luca, R. Cramer, and P. M. A. Sloot.
New Approach to Privacy-Preserving Clinical Decision Support Systems for HIV Treatment.
Journal of medical systems
46(12), 84.
-
Article
Q. Palazzo, M. Stagioni, S. Raaijmakers, R. G. Belleman, F. Prada, J. U. Hammel, S. Fermani, J. Kaandorp, S. Goffredo, and G. Falini.
Multiscale analysis on otolith structural features reveals differences in ontogenesis and sex in Merluccius merluccius in the western Adriatic Sea.
Royal Society Open Science
9(5), 211943.
-
Article
P. Rutten, M. H. Lees, S. Klous, H. Heesterbeek, and P. M. A. Sloot.
Modelling the dynamic relationship between spread of infection and observed crowd movement patterns at large scale events.
Scientific Reports
12, 14825.
-
Article
R. M. Padmos, N. Arrarte Terreros, T. I. Józsa, G. Závodszky, H. A. Marquering, C. B. L. M. Majoie, S. J. Payne, and A. G. Hoekstra.
Modelling collateral flow and thrombus permeability during acute ischaemic stroke.
Journal of the Royal Society Interface
19(195), 20220649.
-
Article
E. Dignum, E. Athieniti, W. Boterman, A. Flache, and M. Lees.
Mechanisms for increased school segregation relative to residential segregation: a model-based analysis.
Computers, Environment and Urban Systems
93, 101772.
-
Article
A. R. Pourghaderi, N. Kogtikov, M. H. Lees, W. Cai, P. P. Pek, A. Fu Wah Ho, W. Ming Ng, J. Kwak, A. Elgin White, S. Lynn Lim, S. Shao Wei Lam, and M. Eng Hock Ong.
Maximum expected survival rate model for public access defibrillator placement.
Resuscitation
170, pp. 213-221.
-
Article
Q. Kimmerlin, S. Moog, A. Yakusheva, C. Ziessel, A. Eckly, M. Freund, G. Závodszky, Y. Knapp, P. Mangin, and F. Lanza.
Loss of α4A- and β1-tubulins leads to severe platelet spherocytosis and strongly impairs hemostasis in mice.
Blood
140(21), pp. 2290-2299.
-
Article
K. P. Fung, K. Rogers, S. Hallifax, G. S. Woodside, D. Vogel, and L. E. Nacke.
LightPlay: Using an External Ambient Lighting Strip for Video Game Indicators.
Proceedings of the ACM on Human-Computer Interaction
6(CHI PLAY), 241.
-
Article
J. M. Meylahn and A. V. den Boer.
Learning to Collude in a Pricing Duopoly.
Manufacturing and Service Operations Management
24(5), pp. 2577-2594.
-
Article
L. Lang, P. Baudot, R. Quax, and P. Forré.
Information Decomposition Diagrams Applied beyond Shannon Entropy: A Generalization of Hu's Theorem.
-
Article
J. Kwak, M. H. Lees, W. Cai, A. R. Pourghaderi, and M. E. H. Ong.
Influence of committed volunteers on helping behavior in emergency evacuations.
Journal of Physics: Complexity
3(1), 015005.
-
Article
L. Wang, E. P. van Poelgeest, A. C. Pronk, J. G. Daams, M. M. G. Leeflang, A. G. Hoekstra, and N. van der Velde.
Impact of cardiovascular evaluations and interventions on fall risk in older adults: a protocol for a scoping review and evidence map.
BMJ Open
12(4), e057959.
-
Article
N. Merabet, P. J. Lucassen, L. Crielaard, K. Stronks, R. Quax, P. M. A. Sloot, S. E. la Fleur, and M. Nicolaou.
How exposure to chronic stress contributes to the development of type 2 diabetes.
Frontiers in Neuroendocrinology
65, 100972.
-
Proceedings
Vivek M. Sheraton and Shijun Ma.
Exploring Ductal Carcinoma In-Situ to Invasive Ductal Carcinoma Transitions Using Energy Minimization Principles.
In: Computational Science - ICCS 2022.
ISBN 9783031087509.
I, pp. 375-388.
-
Article
K. van der Zwet, A. I. Barros, T. M. van Engers, and P. M. A. Sloot.
Emergence of protests during the COVID-19 pandemic: quantitative models to explore the contributions of societal conditions.
Humanities and Social Sciences Communications
9, 68.
-
Article
C. van Elteren, R. Quax, and P. Sloot.
Dynamic importance of network nodes is poorly predicted by static structural features.
Physica A : Statistical Mechanics and its Applications
593, 126889.
-
Article
B. Mohr, K. Shmilovich, I. S. Kleinwächter, D. Schneider, A. L. Ferguson, and T. Bereau.
Data-driven discovery of cardiolipin-selective small molecules by computational active learning.
Chemical Science
13(16), pp. 4498-4511.
-
Article
X. Zhou, A. Belloum, M. H. Lees, T. van Engers, and C. de Laat.
Costly incentives design from an institutional perspective: cooperation, sustainability and affluence.
Proceedings of the Royal Society A-Mathematical, Physical and Engineering Sciences
478(2265), 20220393.
-
Article
S. V. Kovalchuk, V. V. Krzhizhanovskaya, M. Paszyński, D. Kranzlmüller, J. Dongarra, and P. M. A. Sloot.
Computational science for a better future.
Journal of Computational Science
62, 101745.
-
Article
I. Kleinwächter, B. Mohr, A. Joppe, N. Hellmann, T. Bereau, H. D. Osiewacz, and D. Schneider.
CLiB - a novel cardiolipin-binder isolated via data-driven and in vitro screening.
RSC Chemical Biology
3(7), pp. 941-954.
-
Article
D. Wangpraseurt, Y. Sun, S. You, S.-T. Chua, S. K. Noel, H. F. Willard, D. B. Berry, A. M. Clifford, S. Plummer, Y. Xiang, H. H. Hwang, J. Kaandorp, J. M. Diaz, T. C. La Jeunesse, M. Pernice, S. Vignolini, M. Tresguerres, and S. Chen.
Bioprinted Living Coral Microenvironments Mimicking Coral‐Algal Symbiosis.
Advanced Functional Materials
32(35), 2202273.
-
Article
-
Article
J. van der Velden, F. W. Asselbergs, J. Bakkers, S. Batkai, L. Bertrand, C. R. Bezzina, I. Bot, B. J. J. M. Brundel, L. Carrier, S. Chamuleau, M. Ciccarelli, D. Dawson, S. M. Davidson, A. Dendorfer, D. J. Duncker, T. Eschenhagen, L. Fabritz, I. Falcão-Pires, P. Ferdinandy, M. Giacca, H. Girao, C. Gollmann-Tepeköylü, M. Gyongyosi, T. J. Guzik, N. Hamdani, S. Heymans, A. Hilfiker, D. Hilfiker-Kleiner, A. G. Hoekstra, J.-S. Hulot, D. W. D. Kuster, L. W. van Laake, S. Lecour, T. Leiner, W. A. Linke, J. Lumens, E. Lutgens, R. Madonna, L. Maegdefessel, M. Mayr, P. van der Meer, R. Passier, F. Perbellini, C. Perrino, M. Pesce, S. Priori, C. A. Remme, B. Rosenhahn, U. Schotten, R. Schulz, K. R. Sipido, J. P. G. Sluijter, F. van Steenbeek, S. Steffens, C. M. Terracciano, C. G. Tocchetti, P. Vlasman, K. K. Yeung, S. Zacchigna, D. Zwaagman, and T. Thum.
Animal models and animal-free innovations for cardiovascular research: current status and routes to be explored. Consensus document of the ESC Working Group on Myocardial Function and the ESC Working Group on Cellular Biology of the Heart.
Cardiovascular research
118(15), pp. 3016-3051.
-
Article
J. R. Helmus, M. H. Lees, and R. van den Hoed.
A validated agent-based model for stress testing charging infrastructure utilization.
Transportation Research Part A - Policy and Practice
159, pp. 237-262.
-
Article
M. W. J. van den Ende, S. Epskamp, M. H. Lees, H. L. J. van der Maas, R. W. Wiers, and P. M. A. Sloot.
A review of mathematical modeling of addiction regarding both (neuro-) psychological processes and the social contagion perspectives.
Addictive Behaviors
127, 107201.
-
Article
K. den Nijs, J. Edivaldo, B. D. L. Châtel, J. F. Uleman, M. Olde Rikkert, H. Wertheim, and R. Quax.
A Global Sharing Mechanism of Resources.
International Journal of Environmental Research and Public Health
19(10), 5930.
Publications of the CSL group