-
Article
D. Roy and M. Lees.
Understanding resilience in slums using an agent-based model.
Computers, Environment and Urban Systems
.
-
Article
B. Czaja, M. Gutierrez, G. Závodszky, D. de Kanter, A. Hoekstra, and O. Eniola-Adefeso.
The influence of red blood cell deformability on hematocrit profiles and platelet margination.
PLoS Computational Biology
.
-
Article
-
Article
L. Crielaard, P. Dutta, R. Quax, M. Nicolaou, N. Merabet, K. Stronks, and P. M. A. Sloot.
Social norms and obesity prevalence: From cohort to system dynamics models.
Obesity Reviews
.
-
Article
A. Nikishova, G. E. Comi, and A. G. Hoekstra.
Sensitivity analysis based dimension reduction of multiscale models.
Mathematics and Computers in Simulation
pp. 205-220.
-
Proceedings
I. Derevitskii, N. Kogtikov, M. H. Lees, W. Cai, and M. E. H. Ong.
Risk-based AED placement - Singapore case.
In:
Computational Science – ICCS 2020.
pp. 577-590.
-
Article
M. Girard and T. Bereau.
Regulating Lipid Composition Rationalizes Acyl Tail Saturation Homeostasis in Ectotherms.
Biophysical Journal
pp. 892-899.
-
Article
M. Boersma, A. Maliutin, S. Sourabh, L. A. Hoogduin, and D. Kandhai.
Reducing the complexity of financial networks using network embeddings.
Scientific Reports
.
-
Article
A. M. Shibeko, B. Chopard, A. G. Hoekstra, and M. A. Panteleev.
Redistribution of TPA Fluxes in the Presence of PAI-1 Regulates Spatial Thrombolysis.
Biophysical Journal
pp. 638-651.
-
Article
O. Har-Shemesh, R. Quax, J. S. Lansing, and P. M. A. Sloot.
Questionnaire data analysis using information geometry.
Scientific Reports
.
-
Article
S. Sourabh, Markus Hofer, and B. D. Kandhai.
Quantifying systemic risk using Bayesian networks.
Risk.net
.
-
Article
A. H. R. Koch, S. Morsbach, T. Bereau, G. Lévêque, H.-J. Butt, M. Deserno, K. Landfester, and G. Fytas.
Probing Nanoparticle/Membrane Interactions by Combining Amphiphilic Diblock Copolymer Assembly and Plasmonics.
The journal of Physical Chemistry. B
pp. 742-750.
-
Article
C. Hoffmann, A. Centi, R. Menichetti, and T. Bereau.
Molecular dynamics trajectories for 630 coarse-grained drug-membrane permeations.
Scientific Data
.
-
Proceedings
J. Kwak, M. H. Lees, W. Cai, and M. E. H. Ong.
Modeling helping behavior in emergency evacuations using volunteer’s dilemma game.
In:
Computational Science – ICCS 2020.
pp. 513-523.
-
Proceedings
A. W. Abcouwer and Emoke Takács.
Leadership, Management and Teams: A way of Being Successful.
In: Proceedings of the 16th European Conference on Management, Leadership and Governance.
pp. 239-249.
-
Article
O. Severiukhina, S. Kesarev, K. Bochenina, A. Boukhanovsky, M. H. Lees, and P. M. A. Sloot.
Large-scale forecasting of information spreading.
Journal of Big Data
.
-
Article
C. Scherer, R. Scheid, D. Andrienko, and T. Bereau.
Kernel-Based Machine Learning for Efficient Simulations of Molecular Liquids.
Journal of Chemical Theory and Computation
pp. 3194-3204.
-
Article
K. de Vries, A. Nikishova, B. Czaja, G. Závodszky, and A. G. Hoekstra.
Inverse Uncertainty Quantification of a cell model using a Gaussian Process metamodel.
International Journal for Uncertainty Quantification
pp. 333-349.
-
Article
Yasemin Bozkurt Varolgünes, Tristan Bereau, and Joseph F. Rudzinski.
Interpretable embeddings from molecular simulations using Gaussian mixture variational autoencoders.
Machine Learning: Science and Technology
.
-
Article
A. Centi, A. Dutta, S. H. Parekh, and T. Bereau.
Inserting Small Molecules across Membrane Mixtures.
Biophysical Journal
pp. 1321-1332.
-
Article
P. R. Konduri, H. A. Marquering, E. E. van Bavel, A. Hoekstra, C. B. L. M. Majoie, R. Padmos, and V. Azizi.
In-Silico Trials for Treatment of Acute Ischemic Stroke.
Frontiers in Neurology
.
-
Article
O. Metsker, K. Magoev, A. Yakovlev, S. Yanishevskiy, G. Kopanitsa, S. Kovalchuk, and V. V. Krzhizhanovskaya.
Identification of risk factors for patients with diabetes: diabetic polyneuropathy case study.
BMC Medical Informatics and Decision Making
.
-
Article
B. Csippa, D. Gyürki, G. Závodszky, I. Szikora, and G. Paál.
Hydrodynamic Resistance of Intracranial Flow-Diverter Stents.
Cardiovascular Engineering and Technology
pp. 1-13.
-
Article
C. Rauer and T. Bereau.
Hydration free energies from kernel-based machine learning: Compound-database bias.
Journal of Chemical Physics
.
-
Proceedings
Tjula Daelmans, Sophie Hutten, Judith Niks, E. Takács, and A. W. Abcouwer.
Future Prospects of the Transitioning Energy.
In: Proceedings of the 16th European Conference on Management, Leadership and Governance.
pp. 57-64.
-
Article
C. Liu, J. G. Brandenburg, O. Valsson, K. Kremer, and T. Bereau.
Free-energy landscape of polymer-crystal polymorphism.
Soft Matter
pp. 9683-9692.
-
Article
J. J. Lever, I. A. van de Leemput, E. Weinans, R. Quax, V. Dakos, E. H. van Nes, J. Bascompte, and M. Scheffer.
Foreseeing the future of mutualistic communities beyond collapse.
Ecology Letters
pp. 2-15.
-
Article
M. V. Sheraton, G. G. Y. Chiew, V. Melnikov, E. Y. Tan, K. Q. Luo, N. Verma, and P. M. A. Sloot.
Emergence of spatio-temporal variations in chemotherapeutic drug efficacy: in-vitro and in-Silico 3D tumour spheroid studies.
BMC Cancer
.
-
Proceedings
L. E. Veen and A. G. Hoekstra.
Easing Multiscale Model Design and Coupling with MUSCLE 3.
In:
Computational Science – ICCS 2020.
pp. 425-438.
-
Proceedings
B. Nannes, R. Quax, H. Ashikaga, M. Hocini, R. Dubois, O. Bernus, and M. Haïssaguerre.
Early signs of critical slowing down in heart surface electrograms of ventricular fibrillation victims.
In:
Computational Science – ICCS 2020.
pp. 334-347.
-
Proceedings
-
Article
J. W. Barnett, C. R. Bilchak, Y. Wang, B. C. Benicewicz, L. A. Murdock, T. Bereau, and S. K. Kumar.
Designing exceptional gas-separation polymer membranes using machine learning.
Sciences advances
.
-
Article
C. H. Tan, H.-S. Oh, V. M. Sheraton, E. Mancini, S. C. J. Loo, S. Kjelleberg, P. M. A. Sloot, and S. A. Rice.
Convection and the Extracellular Matrix Dictate Inter- and Intra-Biofilm Quorum Sensing Communication in Environmental Systems.
Environmental Science and Technology
p. 6730–6740.
-
Article
I. Anagnostou, J. Sanchez Rivero, S. Sourabh, and D. Kandhai.
Contagious defaults in a credit portfolio: a Bayesian network approach.
Journal of Credit Risk
pp. 1-26.
-
Article
P. J. S. Cardoso, J. M. F. Rodrigues, J. Monteiro, R. Lam, V. V. Krzhizhanovskaya, M. H. Lees, J. Dongarra, and P. M. A. Sloot.
Computational Science in the Interconnected World: Selected papers from 2019 International Conference on Computational Science.
Journal of Computational Science
.
-
Article
J. F. Rudzinski and T. Bereau.
Coarse-grained conformational surface hopping.
Journal of Chemical Physics
.
-
Article
D. W. Wright, R. A. Richardson, W. Edeling, J. Lakhlili, R. C. Sinclair, V. Jancauskas, D. Suleimenova, B. Bosak, M. Kulczewski, T. Piontek, P. Kopta, I. Chirca, H. Arabnejad, O. O. Luk, O. Hoenen, J. Węglarz, D. Crommelin, D. Groen, and P. V. Coveney.
Building Confidence in Simulation: Applications of EasyVVUQ.
Advanced Theory and Simulations
.
-
Article
J. Burger, D. C. van der Veen, D. J. Robinaugh, R. Quax, H. Riese, R. A. Schoevers, and S. Epskamp.
Bridging the gap between complexity science and clinical practice by formalizing idiographic theories: a computational model of functional analysis.
BMC Medicine
.
-
Article
B. J. M. van Rooij, G. Závodszky, A. G. Hoekstra, and D. N. Ku.
Biorheology of occlusive thrombi formation under high shear: in vitro growth and shrinkage.
Scientific Reports
.
-
Article
D. Roy, D. Bernal, and M. Lees.
An exploratory factor analysis model for slum severity index in Mexico City.
Urban Studies
pp. 789-805.
-
Article
M. Stieffenhofer, M. Wand, and T. Bereau.
Adversarial reverse mapping of equilibrated condensed-phase molecular structures.
Machine Learning: Science and Technology
.
-
Book
T. Abcouwer, E. Takács, and O.-P. Banga.
Adaptive Information Management.
-
Article
P. S. Zun, A. J. Narracott, P. C. Evans, B. J. M. van Rooij, and A. G. Hoekstra.
A particle-based model for endothelial cell migration under flow conditions.
Biomechanics and Modeling in Mechanobiology
pp. 681-692.
-
Article
G. Závodszky, B. Csippa, G. Paál, and I. Szikora.
A novel virtual flow diverter implantation method with realistic deployment mechanics and validated force response.
International Journal for Numerical Methods in Biomedical Engineering
.
-
Article
J. R. Helmus, M. H. Lees, and R. van den Hoed.
A data driven typology of electric vehicle user types and charging sessions.
Transportation Research. Part C, Emerging Technologies
.
-
Proceedings
B. Czaja, G. Závodszky, and A. Hoekstra.
A Heterogeneous Multi-scale Model for Blood Flow.
In:
Computational Science – ICCS 2020.
pp. 403-409.
-
Article
-
Article
S. Alowayyed, M. Vassaux, B. Czaja, P. V. Coveney, and A. G. Hoekstra.
Towards heterogeneous multi-scale computing on large scale parallel supercomputers.
Supercomputing Frontiers and Innovations
pp. 20-43.
-
Article
V. Karbovskii, O. Severiukhina, I. Derevitskii, D. Voloshin, A. Presbitero, and M. Lees.
The impact of different obstacles on crowd dynamics.
Journal of Computational Science
.
-
Article
I. Vermeulen, J. R. Helmus, M. Lees, and R. van den Hoed.
Simulation of future electric vehicle charging behavior—effects of transition from PHEV to FEV.
World Electric Vehicle Journal
.
-
Article
V. Sivadasan, E. Lorenz, A. G. Hoekstra, and D. Bonn.
Shear thickening of dense suspensions: The role of friction.
Physics of Fluids
.
-
Article
A. Nikishova and A. G. Hoekstra.
Semi-intrusive uncertainty propagation for multiscale models.
Journal of Computational Science
pp. 80-90.
-
Article
A. Nikishova, L. Veen, P. Zun, and A. G. Hoekstra.
Semi-intrusive multiscale metamodelling uncertainty quantification with application to a model of in-stent restenosis.
Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences
.
-
Article
-
Article
I. Anagnostou and D. Kandhai.
Risk Factor Evolution for Counterparty Credit Risk under a Hidden Markov Model.
Risks
.
-
Article
G. Závodszky, B. van Rooij, B. Czaja, V. Azizi, D. de Kanter, and A. G. Hoekstra.
Red blood cell and platelet diffusivity and margination in the presence of cross-stream gradients in blood flows.
Physics of Fluids
.
-
Article
M. V. Sheraton, V. R. Melnikov, and P. M. A. Sloot.
Prediction and quantification of bacterial biofilm detachment using Glazier-Graner–Hogeweg method based model simulations.
Journal of Theoretical Biology
.
-
Article
S. Alowayyed, T. Piontek, J. L. Suter, O. Hoenen, D. Groen, O. Luk, B. Bosak, P. Kopta, K. Kurowski, O. Perks, K. Brabazon, V. Jancauskas, D. Coster, P. V. Coveney, and A. G. Hoekstra.
Patterns for High Performance Multiscale Computing.
Future Generation Computer Systems
pp. 335-346.
-
Proceedings
V. Azizi Tarksalooyeh, G. Závodszky, and A. G. Hoekstra.
Optimizing Parallel Performance of the Cell Based Blood Flow Simulation Software HemoCell.
In:
Computational Science – ICCS 2019.
pp. 537-547.
-
Article
A. G. Hoekstra, S. Portegies Zwart, and P. V. Coveney.
Multiscale modelling, simulation and computing: from the desktop to the exascale.
Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences
.
-
Article
A. G. Hoekstra, B. Chopard, D. Coster, S. Portegies Zwart, and P. V. Coveney.
Multiscale computing for science and engineering in the era of exascale performance.
Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences
.
-
Article
P. Berg, S. Voß, G. Janiga, S. Saalfeld, A. W. Bergersen, K. Valen-Sendstad, J. Bruening, L. Goubergrits, A. Spuler, T. L. Chiu, A. C. O. Tsang, G. Copelli, B. Csippa, G. Paál, G. Závodszky, F. J. Detmer, B. J. Chung, J. R. Cebral, S. Fujimura, H. Takao, C. Karmonik, S. Elias, N. M. Cancelliere, M. Najafi, D. A. Steinman, V. M. Pereira, S. Piskin, E. A. Finol, M. Pravdivtseva, P. Velvaluri, H. Rajabzadeh-Oghaz, N. Paliwal, H. Meng, S. Seshadhri, S. Venguru, M. Shojima, S. Sindeev, S. Frolov, Y. Qian, Y.-A. Wu, K. D. Carlson, D. F. Kallmes, D. Dragomir-Daescu, and O. Beuing.
Multiple Aneurysms AnaTomy CHallenge 2018 (MATCH)—phase II: rupture risk assessment.
International Journal of Computer Assisted Radiology and Surgery
p. 1795–1804.
-
Article
W. R. J. Vermeulen, D. Roy, and R. Quax.
Modelling the Influence of Regional Identity on Human Migration.
Urban Science
.
-
Article
V. Prana, P. Tieri, M. C. Palumbo, E. Mancini, and F. Castiglione.
Modeling the effect of high calorie diet on the interplay between adipose tissue, inflammation and diabetes.
Computational and Mathematical Methods in Medicine
.
-
Proceedings
S. Shakeri, V. Maccatrozzo, L. Veen, R. Bakhshi, L. Gommans, C. de Laat, and P. Grosso.
Modeling and matching digital data marketplace policies.
In: IEEE 15th International Conference on eScience.
pp. 570-577.
-
Article
Z. Huang, E. Lum, G. Jimenez, M. Semwal, P. Sloot, and J. Car.
Medication management support in diabetes: a systematic assessment of diabetes self-management apps.
BMC Medicine
.
-
Article
E. Caroselli, F. Gizzi, F. Prada, C. Marchini, V. Airi, J. Kaandorp, G. Falini, Z. Dubinsky, and S. Goffredo.
Low and variable pH decreases recruitment efficiency in populations of a temperate coral naturally present at CO2 vent.
Limnology and Oceanography
pp. 1059-1069.
-
Article
P. S. Zun, A. J. Narracott, C. Chiastra, J. Gunn, and A. G. Hoekstra.
Location-Specific Comparison Between a 3D In-Stent Restenosis Model and Micro-CT and Histology Data from Porcine In Vivo Experiments.
Cardiovascular Engineering and Technology
p. 568–582.
-
Proceedings
D. Groen, R. A. Richardson, D. W. Wright, V. Jancauskas, R. Sinclair, P. Karlshoefer, M. Vassaux, H. Arabnejad, T. Piontek, P. Kopta, B. Bosak, J. Lakhlili, O. Hoenen, D. Suleimenova, W. Edeling, D. Crommelin, A. Nikishova, and P. V. Coveney.
Introducing VECMAtk - Verification, Validation and Uncertainty Quantification for Multiscale and HPC Simulations.
In: Computational Science – ICCS 2019.
pp. 479-492.
-
Article
J. Runge, S. Bathiany, E. Bollt, G. Camps-Valls, D. Coumou, E. Deyle, C. Glymour, M. Kretschmer, M. D. Mahecha, J. Muñoz-Marí, E. H. van Nes, J. Peters, R. Quax, M. Reichstein, M. Scheffer, B. Schölkopf, P. Spirtes, G. Sugihara, J. Sun, K. Zhang, and J. Zscheischler.
Inferring causation from time series in Earth system sciences.
Nature Communications
.
-
Article
E. Ranguelova, B. Weel, D. Roy, M. Kuffer, K. Pfeffer, and M. Lees.
Image Based Classification of Slums, Built-Up and Non-Built-Up Areas in Kalyan and Bangalore, India.
European Journal of Remote Sensing
pp. 40-61.
-
Article
B. J. M. van Rooij, G. Závodszky, V. W. Azizi Tarksalooyeh, and A. G. Hoekstra.
Identifying the start of a platelet aggregate by the shear rate and the cell-depleted layer.
Journal of the Royal Society Interface
.
-
Article
A. Presbitero, E. Mancini, F. Castiglione, V. V. Krzhizhanovskaya, and R. Quax.
Game of neutrophils: modeling the balance between apoptosis and necrosis.
BMC Bioinformatics
.
-
Article
E. Weinans, J. J. Lever, S. Bathiany, R. Quax, J. Bascompte, E. H. van Nes, M. Scheffer, and I. A. van de Leemput.
Finding the direction of lowest resilience in multivariate complex systems.
Journal of the Royal Society Interface
.
-
Article
S. Georgievska, P. Rutten, J. Amoraal, E. Ranguelova, R. Bakhshi, B. L. de Vries, M. Lees, and S. Klous.
Detecting high indoor crowd density with Wi-Fi localization: a statistical mechanics approach.
Journal of Big Data
.
-
Article
J. Wang, M. Kuffer, D. Roy, and K. Pfeffer.
Deprivation pockets through the lens of convolutional neural networks.
Remote Sensing of the Environment
.
-
Article
M. G. M. Olde Rikkert, P. P. M. van Zuijlen, M. de Kleuver, A. van Reekum, A. G. Hoekstra, and P. M. A. Sloot.
Complexiteit van ziekten.
Nederlands Tijdschrift voor Geneeskunde
.
-
Chapter
G. Moysiadis, I. Anagnostou, and D. Kandhai.
Calibrating the Mean-Reversion Parameter in the Hull-White Model Using Neural Networks.
In:
ECML PKDD 2018 Workshops.
pp. 23-36.
-
Article
P. Dutta, L. Ma, Y. Ali, P. M. A. Sloot, and J. Zheng.
Boolean network modeling of β-cell apoptosis and insulin resistance in type 2 diabetes mellitus.
BMC Systems Biology
.
-
Proceedings
K. van der Zwet, T. M. van Engers, A. I. Barros, and Bob van der Vecht.
An agent-based model for emergent opponent behavior.
In: Computational Science – ICCS 2019.
-
Article
Z. Huang, E. Tan, E. Lum, P. Sloot, B. O. Boehm, and J. Car.
A Smartphone App to Improve Medication Adherence in Patients With Type 2 Diabetes in Asia.
JMIR mHealth and uHealth
.
Publications of the CSL group