-
Proceedings
Tjula Daelmans, Sophie Hutten, Judith Niks, Emőke Takács, and A. W. Abcouwer.
Future Prospects of the Transitioning Energy.
In: Proceedings of the 16th European Conference on Management, Leadership and Governance.
ISBN 9781912764778.
pp. 57-64.
-
Article
C. Liu, J. G. Brandenburg, O. Valsson, K. Kremer, and T. Bereau.
Free-energy landscape of polymer-crystal polymorphism.
Soft Matter
16(42), pp. 9683-9692.
-
Article
J. J. Lever, I. A. van de Leemput, E. Weinans, R. Quax, V. Dakos, E. H. van Nes, J. Bascompte, and M. Scheffer.
Foreseeing the future of mutualistic communities beyond collapse.
Ecology Letters
23(1), pp. 2-15.
-
Article
M. V. Sheraton, G. G. Y. Chiew, V. Melnikov, E. Y. Tan, K. Q. Luo, N. Verma, and P. M. A. Sloot.
Emergence of spatio-temporal variations in chemotherapeutic drug efficacy: in-vitro and in-Silico 3D tumour spheroid studies.
BMC Cancer
20, 1201.
-
Proceedings
L. E. Veen and A. G. Hoekstra.
Easing Multiscale Model Design and Coupling with MUSCLE 3.
In:
Computational Science – ICCS 2020.
ISBN
9783030504335.
VI, pp. 425-438.
-
Proceedings
B. Nannes, R. Quax, H. Ashikaga, M. Hocini, R. Dubois, O. Bernus, and M. Haïssaguerre.
Early signs of critical slowing down in heart surface electrograms of ventricular fibrillation victims.
In:
Computational Science – ICCS 2020.
ISBN
9783030504236.
IV, pp. 334-347.
-
Proceedings
A. Presbitero, R. Quax, V. V. Krzhizhanovskaya, and P. M. A. Sloot.
Detecting critical transitions in the human innate immune system post-cardiac surgery.
In:
Computational Science – ICCS 2020.
ISBN
9783030503710.
I, pp. 371-384.
-
Article
J. W. Barnett, C. R. Bilchak, Y. Wang, B. C. Benicewicz, L. A. Murdock, T. Bereau, and S. K. Kumar.
Designing exceptional gas-separation polymer membranes using machine learning.
Sciences advances
6(20), eaaz4301.
-
Article
Zhilian Huang, Eberta Tan, Elaine Lum, Peter Sloot, Bernhard Otto Boehm, and Josip Car.
Correction: A Smartphone App to Improve Medication Adherence in Patients With Type 2 Diabetes in Asia: Feasibility Randomized Controlled Trial.
JMIR mHealth and uHealth
8(4), e18411.
-
Article
C. H. Tan, H.-S. Oh, V. M. Sheraton, E. Mancini, S. C. J. Loo, S. Kjelleberg, P. M. A. Sloot, and S. A. Rice.
Convection and the Extracellular Matrix Dictate Inter- and Intra-Biofilm Quorum Sensing Communication in Environmental Systems.
Environmental Science and Technology
54(11), p. 6730–6740.
-
Article
I. Anagnostou, J. Sanchez Rivero, S. Sourabh, and D. Kandhai.
Contagious defaults in a credit portfolio: a Bayesian network approach.
Journal of Credit Risk
16(1), pp. 1-26.
-
Article
P. J. S. Cardoso, J. M. F. Rodrigues, J. Monteiro, R. Lam, V. V. Krzhizhanovskaya, M. H. Lees, J. Dongarra, and P. M. A. Sloot.
Computational Science in the Interconnected World: Selected papers from 2019 International Conference on Computational Science.
Journal of Computational Science
47, 101222.
-
Article
J. F. Rudzinski and T. Bereau.
Coarse-grained conformational surface hopping.
Journal of Chemical Physics
153(21), 214110.
-
PhD Thesis
B. E. Czaja.
Cell resolved blood flow modeling with the Lattice Boltzmann method.
ISBN
9789464211191.
Supervised by
A. G. Hoekstra and G. Závodszky.
-
Article
D. W. Wright, R. A. Richardson, W. Edeling, J. Lakhlili, R. C. Sinclair, V. Jancauskas, D. Suleimenova, B. Bosak, M. Kulczewski, T. Piontek, P. Kopta, I. Chirca, H. Arabnejad, O. O. Luk, O. Hoenen, J. Węglarz, D. Crommelin, D. Groen, and P. V. Coveney.
Building Confidence in Simulation: Applications of EasyVVUQ.
Advanced Theory and Simulations
3(8), 1900246.
-
Article
J. Burger, D. C. van der Veen, D. J. Robinaugh, R. Quax, H. Riese, R. A. Schoevers, and S. Epskamp.
Bridging the gap between complexity science and clinical practice by formalizing idiographic theories: a computational model of functional analysis.
BMC Medicine
18, 99.
-
Article
B. J. M. van Rooij, G. Závodszky, A. G. Hoekstra, and D. N. Ku.
Biorheology of occlusive thrombi formation under high shear: in vitro growth and shrinkage.
Scientific Reports
10, 18604.
-
Article
D. Roy, D. Bernal, and M. Lees.
An exploratory factor analysis model for slum severity index in Mexico City.
Urban Studies
57(4), pp. 789-805.
-
Book
T. Abcouwer, E. Takács, and O.-P. Banga.
Adaptive Information Management.
ISBN 9789083045801.
-
Article
P. S. Zun, A. J. Narracott, P. C. Evans, B. J. M. van Rooij, and A. G. Hoekstra.
A particle-based model for endothelial cell migration under flow conditions.
Biomechanics and Modeling in Mechanobiology
19(2), pp. 681-692.
-
Article
G. Závodszky, B. Csippa, G. Paál, and I. Szikora.
A novel virtual flow diverter implantation method with realistic deployment mechanics and validated force response.
International Journal for Numerical Methods in Biomedical Engineering
36(6), e3340.
-
Article
J. R. Helmus, M. H. Lees, and R. van den Hoed.
A data driven typology of electric vehicle user types and charging sessions.
Transportation Research. Part C, Emerging Technologies
115, 102637.
-
Proceedings
B. Czaja, G. Závodszky, and A. Hoekstra.
A Heterogeneous Multi-scale Model for Blood Flow.
In:
Computational Science – ICCS 2020.
ISBN
9783030504335.
VI, pp. 403-409.
-
Article
-
Article
S. Alowayyed, M. Vassaux, B. Czaja, P. V. Coveney, and A. G. Hoekstra.
Towards heterogeneous multi-scale computing on large scale parallel supercomputers.
Supercomputing Frontiers and Innovations
6(4), pp. 20-43.
-
Article
V. Karbovskii, O. Severiukhina, I. Derevitskii, D. Voloshin, A. Presbitero, and M. Lees.
The impact of different obstacles on crowd dynamics.
Journal of Computational Science
36, 100893.
-
PhD Thesis
V. Sheraton Muniraj.
The emergence of biofilms.
Supervised by
P. M. A. Sloot.
-
Article
I. Vermeulen, J. R. Helmus, M. Lees, and R. van den Hoed.
Simulation of future electric vehicle charging behavior—effects of transition from PHEV to FEV.
World Electric Vehicle Journal
10(2), 42.
-
Article
V. Sivadasan, E. Lorenz, A. G. Hoekstra, and D. Bonn.
Shear thickening of dense suspensions: The role of friction.
Physics of Fluids
31(10), 103103.
-
Article
A. Nikishova and A. G. Hoekstra.
Semi-intrusive uncertainty propagation for multiscale models.
Journal of Computational Science
35, pp. 80-90.
-
Article
A. Nikishova, L. Veen, P. Zun, and A. G. Hoekstra.
Semi-intrusive multiscale metamodelling uncertainty quantification with application to a model of in-stent restenosis.
Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences
377(2142), 2018154.
-
Article
-
Article
I. Anagnostou and D. Kandhai.
Risk Factor Evolution for Counterparty Credit Risk under a Hidden Markov Model.
Risks
7(2), 66.
-
Article
G. Závodszky, B. van Rooij, B. Czaja, V. Azizi, D. de Kanter, and A. G. Hoekstra.
Red blood cell and platelet diffusivity and margination in the presence of cross-stream gradients in blood flows.
Physics of Fluids
31(3), 031903.
-
Article
M. V. Sheraton, V. R. Melnikov, and P. M. A. Sloot.
Prediction and quantification of bacterial biofilm detachment using Glazier-Graner–Hogeweg method based model simulations.
Journal of Theoretical Biology
482, 109994.
-
Article
S. Alowayyed, T. Piontek, J. L. Suter, O. Hoenen, D. Groen, O. Luk, B. Bosak, P. Kopta, K. Kurowski, O. Perks, K. Brabazon, V. Jancauskas, D. Coster, P. V. Coveney, and A. G. Hoekstra.
Patterns for High Performance Multiscale Computing.
Future Generation Computer Systems
91, pp. 335-346.
-
Proceedings
V. Azizi Tarksalooyeh, G. Závodszky, and A. G. Hoekstra.
Optimizing Parallel Performance of the Cell Based Blood Flow Simulation Software HemoCell.
In:
Computational Science – ICCS 2019.
ISBN
9783030227449.
3, pp. 537-547.
-
Article
A. G. Hoekstra, S. Portegies Zwart, and P. V. Coveney.
Multiscale modelling, simulation and computing: from the desktop to the exascale.
Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences
377(2142), 20180355.
-
Article
A. G. Hoekstra, B. Chopard, D. Coster, S. Portegies Zwart, and P. V. Coveney.
Multiscale computing for science and engineering in the era of exascale performance.
Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences
377(2142), 20180144.
-
Article
P. Berg, S. Voß, G. Janiga, S. Saalfeld, A. W. Bergersen, K. Valen-Sendstad, J. Bruening, L. Goubergrits, A. Spuler, T. L. Chiu, A. C. O. Tsang, G. Copelli, B. Csippa, G. Paál, G. Závodszky, F. J. Detmer, B. J. Chung, J. R. Cebral, S. Fujimura, H. Takao, C. Karmonik, S. Elias, N. M. Cancelliere, M. Najafi, D. A. Steinman, V. M. Pereira, S. Piskin, E. A. Finol, M. Pravdivtseva, P. Velvaluri, H. Rajabzadeh-Oghaz, N. Paliwal, H. Meng, S. Seshadhri, S. Venguru, M. Shojima, S. Sindeev, S. Frolov, Y. Qian, Y.-A. Wu, K. D. Carlson, D. F. Kallmes, D. Dragomir-Daescu, and O. Beuing.
Multiple Aneurysms AnaTomy CHallenge 2018 (MATCH)—phase II: rupture risk assessment.
International Journal of Computer Assisted Radiology and Surgery
14(10), p. 1795–1804.
-
Article
W. R. J. Vermeulen, D. Roy, and R. Quax.
Modelling the Influence of Regional Identity on Human Migration.
Urban Science
3(3), 78.
-
Article
V. Prana, P. Tieri, M. C. Palumbo, E. Mancini, and F. Castiglione.
Modeling the effect of high calorie diet on the interplay between adipose tissue, inflammation and diabetes.
Computational and Mathematical Methods in Medicine
2019, 7525834.
-
Proceedings
S. Shakeri, V. Maccatrozzo, L. Veen, R. Bakhshi, L. Gommans, C. de Laat, and P. Grosso.
Modeling and matching digital data marketplace policies.
In: IEEE 15th International Conference on eScience.
ISBN 9781728124513.
pp. 570-577.
-
Article
Z. Huang, E. Lum, G. Jimenez, M. Semwal, P. Sloot, and J. Car.
Medication management support in diabetes: a systematic assessment of diabetes self-management apps.
BMC Medicine
17, 127.
-
Article
E. Caroselli, F. Gizzi, F. Prada, C. Marchini, V. Airi, J. Kaandorp, G. Falini, Z. Dubinsky, and S. Goffredo.
Low and variable pH decreases recruitment efficiency in populations of a temperate coral naturally present at CO2 vent.
Limnology and Oceanography
64(3), pp. 1059-1069.
-
Article
P. S. Zun, A. J. Narracott, C. Chiastra, J. Gunn, and A. G. Hoekstra.
Location-Specific Comparison Between a 3D In-Stent Restenosis Model and Micro-CT and Histology Data from Porcine In Vivo Experiments.
Cardiovascular Engineering and Technology
10(4), p. 568–582.
-
Proceedings
D. Groen, R. A. Richardson, D. W. Wright, V. Jancauskas, R. Sinclair, P. Karlshoefer, M. Vassaux, H. Arabnejad, T. Piontek, P. Kopta, B. Bosak, J. Lakhlili, O. Hoenen, D. Suleimenova, W. Edeling, D. Crommelin, A. Nikishova, and P. V. Coveney.
Introducing VECMAtk - Verification, Validation and Uncertainty Quantification for Multiscale and HPC Simulations.
In: Computational Science – ICCS 2019.
ISBN 9783030227470.
IV, pp. 479-492.
-
Article
J. Runge, S. Bathiany, E. Bollt, G. Camps-Valls, D. Coumou, E. Deyle, C. Glymour, M. Kretschmer, M. D. Mahecha, J. Muñoz-Marí, E. H. van Nes, J. Peters, R. Quax, M. Reichstein, M. Scheffer, B. Schölkopf, P. Spirtes, G. Sugihara, J. Sun, K. Zhang, and J. Zscheischler.
Inferring causation from time series in Earth system sciences.
Nature Communications
10, 2553.
-
Article
E. Ranguelova, B. Weel, D. Roy, M. Kuffer, K. Pfeffer, and M. Lees.
Image Based Classification of Slums, Built-Up and Non-Built-Up Areas in Kalyan and Bangalore, India.
European Journal of Remote Sensing
52(S1), pp. 40-61.
-
Article
B. J. M. van Rooij, G. Závodszky, V. W. Azizi Tarksalooyeh, and A. G. Hoekstra.
Identifying the start of a platelet aggregate by the shear rate and the cell-depleted layer.
Journal of the Royal Society Interface
16(159), 20190148.
-
Article
A. Presbitero, E. Mancini, F. Castiglione, V. V. Krzhizhanovskaya, and R. Quax.
Game of neutrophils: modeling the balance between apoptosis and necrosis.
BMC Bioinformatics
20(Supplement 6), 475.
-
Article
E. Weinans, J. J. Lever, S. Bathiany, R. Quax, J. Bascompte, E. H. van Nes, M. Scheffer, and I. A. van de Leemput.
Finding the direction of lowest resilience in multivariate complex systems.
Journal of the Royal Society Interface
16(159), 20190629.
-
Article
S. Georgievska, P. Rutten, J. Amoraal, E. Ranguelova, R. Bakhshi, B. L. de Vries, M. Lees, and S. Klous.
Detecting high indoor crowd density with Wi-Fi localization: a statistical mechanics approach.
Journal of Big Data
6, 31.
-
Article
J. Wang, M. Kuffer, D. Roy, and K. Pfeffer.
Deprivation pockets through the lens of convolutional neural networks.
Remote Sensing of the Environment
234, 111448.
-
Article
M. G. M. Olde Rikkert, P. P. M. van Zuijlen, M. de Kleuver, A. van Reekum, A. G. Hoekstra, and P. M. A. Sloot.
Complexiteit van ziekten.
Nederlands Tijdschrift voor Geneeskunde
163(35), D3970.
-
Chapter
G. Moysiadis, I. Anagnostou, and D. Kandhai.
Calibrating the Mean-Reversion Parameter in the Hull-White Model Using Neural Networks.
In:
ECML PKDD 2018 Workshops.
ISBN
9783030134631.
pp. 23-36.
-
Article
P. Dutta, L. Ma, Y. Ali, P. M. A. Sloot, and J. Zheng.
Boolean network modeling of β-cell apoptosis and insulin resistance in type 2 diabetes mellitus.
BMC Systems Biology
13(Supplement 2), 36.
-
Article
Z. Huang, E. Tan, E. Lum, P. Sloot, B. O. Boehm, and J. Car.
A Smartphone App to Improve Medication Adherence in Patients With Type 2 Diabetes in Asia.
JMIR mHealth and uHealth
7(9), e14914.
-
PhD Thesis
P. Zun.
3D modelling of in-stent restenosis.
Supervised by
A. G. Hoekstra, A. V. Boukhanovsky, and A. Svitenkov.