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2024

• Article
  D. Ye, V. Krzhizhanovskaya, and A. G. Hoekstra. Data-driven reduced-order modelling for blood flow simulations with geometry-informed snapshots. Journal of computational Physics 497, 112639.
  Abstract Citation Links
• Article
  A. C. Pronk, L. Wang, E. P. van Poelgeest, M. M. G. Leeflang, J. G. Daams, A. G. Hoekstra, and N. van der Velde. The impact of cardiovascular diagnostics and treatments on fall risk in older adults. GeroScience 46, pp. 153-169.
  Abstract Citation Links
• Article
  J. F. Uleman, R. Quax, R. J. F. Melis, A. G. Hoekstra, and M. G. M. Olde Rikkert. The need for systems thinking to advance Alzheimer's disease research. Psychiatry Research 333, 115741.
  Abstract Citation Links
• Article
  M. Dorst, N. Zeevenhooven, R. Wilding, D. Mende, B. W. Brandt, E. Zaura, A. Hoekstra, and V. M. Sheraton. FAIR compliant database development for human microbiome data samples. Frontiers in Cellular and Infection Microbiology 14, 1384809.
  Abstract Citation Links

2023

• Proceedings
  J. van Dijk, G. Zavodszky, A.-L. Varbanescu, A. D. Pimentel, and A. Hoekstra. Building a Fine-Grained Analytical Performance Model for Complex Scientific Simulations. In: Parallel Processing and Applied Mathematics. ISBN 9783031304422. I, pp. 183-196.
  Abstract Citation Links
• Article
  L. Wang, A. C. Pronk, E. P. van Poelgeest, R. Briggs, J. A. H. R. Claassen, S. Jansen, M. Klop, F. J. de Lange, C. C. G. M. Meskers, V. J. J. Odekerken, S. J. Payne, M. C. Trappenburg, R. D. Thijs, J. F. Uleman, A. G. Hoekstra, and N. van der Velde. Applying systems thinking to unravel the mechanisms underlying orthostatic hypotension related fall risk. GeroScience 45(4), pp. 2743-2755.
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• Article
  Y. Hao, G. Závodszky, C. Tersteeg, M. Barzegari, and A. G. Hoekstra. Image-based flow simulation of platelet aggregates under different shear rates. PLoS Computational Biology 19(7), e1010965.
  Abstract Citation Links
• Article
  J. F. Uleman, R. J. F. Melis, E. Ntanasi, N. Scarmeas, A. G. Hoekstra, R. Quax, and M. G. M. Olde Rikkert. Simulating the multicausality of Alzheimer's disease with system dynamics. Alzheimer's & Dementia 19(6), pp. 2633-2654.
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• Article
  C. J. Spieker, G. Závodszky, C. Mouriaux, P. H. Mangin, and A. G. Hoekstra. Initial platelet aggregation in the complex shear environment of a punctured vessel model. Physics of Fluids 35(7), 071904.
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• Article
  Rémy Petkantchin, Alexandre Rousseau, Omer Eker, Karim Zouaoui Boudjeltia, Franck Raynaud, Bastien Chopard, Alfons Hoekstra, Raymond Padmos, Victor Azizi, Claire Miller, and Max van der Kolk. Author Correction: A simplified mesoscale 3D model for characterizing fibrinolysis under flow conditions. Scientific Reports 13, 20369.
  Abstract Citation Links
• Article
  R. Petkantchin, A. Rousseau, O. Eker, K. Zouaoui Boudjeltia, F. Raynaud, B. Chopard, A. Hoekstra, R. Padmos, V. Azizi, C. Miller, and M. van der Kolk. A simplified mesoscale 3D model for characterizing fibrinolysis under flow conditions. Scientific Reports 13, 13681.
  Abstract Citation Links
• Article
  J. F. Uleman, R. J. F. Melis, A. G. Hoekstra, M. G. M. Olde Rikkert, and R. Quax. Exploring the potential impact of multi-factor precision interventions in Alzheimer's disease with system dynamics. Journal of Biomedical Informatics 145, 104462.
  Abstract Citation Links

2022

• Article
  D. Ye, P. Zun, V. Krzhizhanovskaya, and A. G. Hoekstra. Uncertainty quantification of a three-dimensional in-stent restenosis model with surrogate modelling. Journal of the Royal Society Interface 19(187), 20210864.
  Abstract Citation Links
• Article
  B. Czaja, J. de Bouter, M. Heisler, G. Závodszky, S. Karst, M. Sarunic, D. Maberley, and A. Hoekstra. The effect of stiffened diabetic red blood cells on wall shear stress in a reconstructed 3D microaneurysm. Computer methods in biomechanics & biomedical engineering 25(15), pp. 1691-1709.
  Abstract Citation Links
• Article
  L. Wang, E. P. van Poelgeest, A. C. Pronk, J. G. Daams, M. M. G. Leeflang, A. G. Hoekstra, and N. van der Velde. Impact of cardiovascular evaluations and interventions on fall risk in older adults: a protocol for a scoping review and evidence map. BMJ Open 12(4), e057959.
  Abstract Citation Links
• Article
  R. M. Padmos, N. Arrarte Terreros, T. I. Józsa, G. Závodszky, H. A. Marquering, C. B. L. M. Majoie, S. J. Payne, and A. G. Hoekstra. Modelling collateral flow and thrombus permeability during acute ischaemic stroke. Journal of the Royal Society Interface 19(195), 20220649.
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• Article
  J. van der Velden, F. W. Asselbergs, J. Bakkers, S. Batkai, L. Bertrand, C. R. Bezzina, I. Bot, B. J. J. M. Brundel, L. Carrier, S. Chamuleau, M. Ciccarelli, D. Dawson, S. M. Davidson, A. Dendorfer, D. J. Duncker, T. Eschenhagen, L. Fabritz, I. Falcão-Pires, P. Ferdinandy, M. Giacca, H. Girao, C. Gollmann-Tepeköylü, M. Gyongyosi, T. J. Guzik, N. Hamdani, S. Heymans, A. Hilfiker, D. Hilfiker-Kleiner, A. G. Hoekstra, J.-S. Hulot, D. W. D. Kuster, L. W. van Laake, S. Lecour, T. Leiner, W. A. Linke, J. Lumens, E. Lutgens, R. Madonna, L. Maegdefessel, M. Mayr, P. van der Meer, R. Passier, F. Perbellini, C. Perrino, M. Pesce, S. Priori, C. A. Remme, B. Rosenhahn, U. Schotten, R. Schulz, K. R. Sipido, J. P. G. Sluijter, F. van Steenbeek, S. Steffens, C. M. Terracciano, C. G. Tocchetti, P. Vlasman, K. K. Yeung, S. Zacchigna, D. Zwaagman, and T. Thum. Animal models and animal-free innovations for cardiovascular research: current status and routes to be explored. Consensus document of the ESC Working Group on Myocardial Function and the ESC Working Group on Cellular Biology of the Heart. Cardiovascular research 118(15), pp. 3016-3051.
  Abstract Citation Links

2021

• Article
  J. F. Uleman, R. J. F. Melis, R. Quax, E. A. van der Zee, D. Thijssen, M. Dresler, O. van de Rest, I. F. van der Velpen, H. H. H. Adams, B. Schmand, I. M. C. M. de Kok, J. de Bresser, E. Richard, M. Verbeek, A. G. Hoekstra, E. A. J. A. Rouwette, and M. G. M. Olde Rikkert. Mapping the multicausality of Alzheimer’s disease through group model building. GeroScience 43(2), p. 829–843.
  Abstract Citation Links
• Article
  B. J. M. van Rooij, G. Závodszky, A. G. Hoekstra, and D. N. Ku. Haemodynamic flow conditions at the initiation of high-shear platelet aggregation: a combined in vitro and cellular in silico study. Interface Focus 11(1), 20190126.
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• Article
  T. I. Józsa, R. M. Padmos, N. Samuels, W. K. El-Bouri, A. G. Hoekstra, and S. J. Payne. A porous circulation model of the human brain for in silico clinical trials in ischaemic stroke. Interface Focus 11(1), 20190127.
  Abstract Citation Links
• Article
  R. M. Padmos, T. I. Józsa, W. K. El-Bouri, P. R. Konduri, S. J. Payne, and A. G. Hoekstra. Coupling one-dimensional arterial blood flow to three-dimensional tissue perfusion models for in silico trials of acute ischaemic stroke. Interface Focus 11(1), 20190125.
  Abstract Citation Links
• Article
  R. M. Padmos, N. Arrarte Terreros, T. I. Józsa, G. Závodszky, H. A. Marquering, C. B. L. M. Majoie, and A. G. Hoekstra. Modelling the leptomeningeal collateral circulation during acute ischaemic stroke. Medical Engineering & Physics 91, pp. 1-11.
  Abstract Citation Links
• Article
  D. Ye, L. Veen, A. Nikishova, J. Lakhlili, W. Edeling, O. O. Luk, V. V. Krzhizhanovskaya, and A. G. Hoekstra. Uncertainty quantification patterns for multiscale models. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 379(2197), 20200072.
  Abstract Citation Links
• Proceedings
  R. M. Padmos, T. I. Józsa, W. K. El-Bouri, G. Závodszky, S. J. Payne, and A. G. Hoekstra. Two-Way Coupling Between 1D Blood Flow and 3D Tissue Perfusion Models. In: Computational Science – ICCS 2021. ISBN 9783030779672. III, pp. 670-683.
  Abstract Citation Links
• Article
  T. I. Józsa, R. M. Padmos, W. K. El-Bouri, A. G. Hoekstra, and S. J. Payne. On the Sensitivity Analysis of Porous Finite Element Models for Cerebral Perfusion Estimation. Annals of Biomedical Engineering 49(12), p. 3647–3665.
  Abstract Citation Links
• Proceedings
  M. van der Kolk, C. Miller, R. Padmos, V. Azizi, and A. Hoekstra. des-ist: A Simulation Framework to Streamline Event-Based In Silico Trials. In: Computational Science – ICCS 2021. ISBN 9783030779672. III, pp. 648-654.
  Abstract Citation Links
• Proceedings
  C. Miller, M. van der Kolk, R. Padmos, T. Józsa, and A. Hoekstra. Uncertainty Quantification of Coupled 1D Arterial Blood Flow and 3D Tissue Perfusion Models Using the INSIST Framework. In: Computational Science – ICCS 2021. ISBN 9783030779801. VI, pp. 691-697.
  Abstract Citation Links
• Article
  D. Suleimenova, H. Arabnejad, W. N. Edeling, D. Coster, O. O. Luk, J. Lakhlili, V. Jancauskas, M. Kulczewski, L. Veen, D. Ye, P. Zun, V. Krzhizhanovskaya, A. Hoekstra, D. Crommelin, P. V. Coveney, and D. Groen. Tutorial applications for Verification, Validation and Uncertainty Quantification using VECMA toolkit. Journal of Computational Science 53, 101402.
  Abstract Citation Links
• Article
  D. Ye, A. Nikishova, L. Veen, P. Zun, and A. G. Hoekstra. Non-intrusive and semi-intrusive uncertainty quantification of a multiscale in-stent restenosis model. Reliability Engineering & System Safety 214, 107734.
  Abstract Citation Links
• Article
  C. J. Spieker, G. Závodszky, C. Mouriaux, M. van der Kolk, C. Gachet, P. H. Mangin, and A. G. Hoekstra. The Effects of Micro-vessel Curvature Induced Elongational Flows on Platelet Adhesion. Annals of Biomedical Engineering 49(12), p. 3609–3620.
  Abstract Citation Links
• Article
  T. Georgakopoulou, A.-E. van der Wijk, E. N. T. P. Bakker, E. vanBavel, A. Hoekstra, R. Padmos, V. Azizi, C. Miller, and M. van der Kolk. Quantitative 3D analysis of tissue damage in a rat model of microembolization. Journal of Biomechanics 128, 110723.
  Abstract Citation Links
• Article
  C. Miller, R. M. Padmos, M. van der Kolk, T. I. Józsa, N. Samuels, Y. Xue, S. J. Payne, and A. G. Hoekstra. In silico trials for treatment of acute ischemic stroke: Design and implementation. Computers in Biology and Medicine 137, 104802.
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• Article
  G. Luraghi, S. Bridio, C. Miller, A. Hoekstra, J. F. Rodriguez Matas, and F. Migliavacca. Applicability analysis to evaluate credibility of an in silico thrombectomy procedure. Journal of Biomechanics 126, 110631.
  Abstract Citation Links
• Article
  P. Zun, A. Svitenkov, and A. Hoekstra. Effects of local coronary blood flow dynamics on the predictions of a model of in-stent restenosis. Journal of Biomechanics 120, 110361.
  Abstract Citation Links
• Article
  J. F. Uleman, R. Quax, R. J. F. Melis, A. Hoekstra, and M. G. M. Olde Rikkert. An individualized systems model to optimize Alzheimer’s disease prevention strategies. Alzheimer's & Dementia 17(S10), e050885.
  Abstract Citation Links
• Article
  P. V. Coveney, A. Hoekstra, B. Rodriguez, and M. Viceconti. Computational biomedicine. Part II. Interface Focus 11(1), 20200082.
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• Article
  P. V. Coveney, D. Groen, and A. G. Hoekstra. Reliability and reproducibility in computational science: implementing validation, verification and uncertainty quantification in silico. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 379(2197), 20200409.
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2020

• Article
  A. Nikishova, G. E. Comi, and A. G. Hoekstra. Sensitivity analysis based dimension reduction of multiscale models. Mathematics and Computers in Simulation 170, pp. 205-220.
  Abstract Citation Links
• Proceedings
  B. Czaja, G. Závodszky, and A. Hoekstra. A Heterogeneous Multi-scale Model for Blood Flow. In: Computational Science – ICCS 2020. ISBN 9783030504335. VI, pp. 403-409.
  Abstract Citation Links
• Article
  B. Czaja, M. Gutierrez, G. Závodszky, D. de Kanter, A. Hoekstra, and O. Eniola-Adefeso. The influence of red blood cell deformability on hematocrit profiles and platelet margination. PLoS Computational Biology 16(3), e1007716.
  Abstract Citation Links
• Article
  K. de Vries, A. Nikishova, B. Czaja, G. Závodszky, and A. G. Hoekstra. Inverse Uncertainty Quantification of a cell model using a Gaussian Process metamodel. International Journal for Uncertainty Quantification 10(4), pp. 333-349.
  Abstract Citation Links
• Proceedings
  L. E. Veen and A. G. Hoekstra. Easing Multiscale Model Design and Coupling with MUSCLE 3. In: Computational Science – ICCS 2020. ISBN 9783030504335. VI, pp. 425-438.
  Abstract Citation Links
• Article
  A. M. Shibeko, B. Chopard, A. G. Hoekstra, and M. A. Panteleev. Redistribution of TPA Fluxes in the Presence of PAI-1 Regulates Spatial Thrombolysis. Biophysical Journal 119(3), pp. 638-651.
  Abstract Citation Links
• Article
  P. R. Konduri, H. A. Marquering, E. E. van Bavel, A. Hoekstra, C. B. L. M. Majoie, R. Padmos, and V. Azizi. In-Silico Trials for Treatment of Acute Ischemic Stroke. Frontiers in Neurology 11, 558125.
  Abstract Citation Links
• Article
  P. S. Zun, A. J. Narracott, P. C. Evans, B. J. M. van Rooij, and A. G. Hoekstra. A particle-based model for endothelial cell migration under flow conditions. Biomechanics and Modeling in Mechanobiology 19(2), pp. 681-692.
  Abstract Citation Links
• Article
  B. J. M. van Rooij, G. Závodszky, A. G. Hoekstra, and D. N. Ku. Biorheology of occlusive thrombi formation under high shear: in vitro growth and shrinkage. Scientific Reports 10, 18604.
  Abstract Citation Links
• Article
  J. Uleman, R. J. F. Melis, A. Hoekstra, R. Quax, and M. G. M. Olde Rikkert. Uncovering the multicausality of Alzheimer’s disease: A systems modeling approach. Alzheimer's & Dementia 16(S10), e041105.
  Abstract Citation Links

2019

• Article
  S. Alowayyed, T. Piontek, J. L. Suter, O. Hoenen, D. Groen, O. Luk, B. Bosak, P. Kopta, K. Kurowski, O. Perks, K. Brabazon, V. Jancauskas, D. Coster, P. V. Coveney, and A. G. Hoekstra. Patterns for High Performance Multiscale Computing. Future Generation Computer Systems 91, pp. 335-346.
  Abstract Citation Links
• Article
  A. Nikishova, L. Veen, P. Zun, and A. G. Hoekstra. Semi-intrusive multiscale metamodelling uncertainty quantification with application to a model of in-stent restenosis. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 377(2142), 2018154.
  Abstract Citation Links
• Article
  G. Závodszky, B. van Rooij, B. Czaja, V. Azizi, D. de Kanter, and A. G. Hoekstra. Red blood cell and platelet diffusivity and margination in the presence of cross-stream gradients in blood flows. Physics of Fluids 31(3), 031903.
  Abstract Citation Links
• Proceedings
  V. Azizi Tarksalooyeh, G. Závodszky, and A. G. Hoekstra. Optimizing Parallel Performance of the Cell Based Blood Flow Simulation Software HemoCell. In: Computational Science – ICCS 2019. ISBN 9783030227449. III, pp. 537-547.
  Abstract Citation Links
• Article
  A. Nikishova and A. G. Hoekstra. Semi-intrusive uncertainty propagation for multiscale models. Journal of Computational Science 35, pp. 80-90.
  Abstract Citation Links
• Article
  A. G. Hoekstra, S. Portegies Zwart, and P. V. Coveney. Multiscale modelling, simulation and computing: from the desktop to the exascale. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 377(2142), 20180355.
  Abstract Citation Links
• Article
  A. G. Hoekstra, B. Chopard, D. Coster, S. Portegies Zwart, and P. V. Coveney. Multiscale computing for science and engineering in the era of exascale performance. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 377(2142), 20180144.
  Abstract Citation Links
• Article
  M. G. M. Olde Rikkert, P. P. M. van Zuijlen, M. de Kleuver, A. van Reekum, A. G. Hoekstra, and P. M. A. Sloot. Complexiteit van ziekten. Nederlands Tijdschrift voor Geneeskunde 163(35), D3970.
  Abstract Citation Links
• Article
  B. J. M. van Rooij, G. Závodszky, V. W. Azizi Tarksalooyeh, and A. G. Hoekstra. Identifying the start of a platelet aggregate by the shear rate and the cell-depleted layer. Journal of the Royal Society Interface 16(159), 20190148.
  Abstract Citation Links
• Article
  V. Sivadasan, E. Lorenz, A. G. Hoekstra, and D. Bonn. Shear thickening of dense suspensions: The role of friction. Physics of Fluids 31(10), 103103.
  Abstract Citation Links
• Article
  P. S. Zun, A. J. Narracott, C. Chiastra, J. Gunn, and A. G. Hoekstra. Location-Specific Comparison Between a 3D In-Stent Restenosis Model and Micro-CT and Histology Data from Porcine In Vivo Experiments. Cardiovascular Engineering and Technology 10(4), p. 568–582.
  Abstract Citation Links
• Article
  S. Alowayyed, M. Vassaux, B. Czaja, P. V. Coveney, and A. G. Hoekstra. Towards heterogeneous multi-scale computing on large scale parallel supercomputers. Supercomputing Frontiers and Innovations 6(4), pp. 20-43.
  Abstract Citation Links

2018

• Article
  S. Alowayyed, G. Závodszky, V. Azizi, and A. G. Hoekstra. Load balancing of parallel cell-based blood flow simulations. Journal of Computational Science 24, pp. 1-7.
  Abstract Citation Links
• Article
  R. Quax, G. Chliamovitch, A. Dupuis, J.-L. Falcone, B. Chopard, A. G. Hoekstra, and P. M. A. Sloot. Information processing features can detect behavioral regimes of dynamical systems. Complexity 2018, 6047846.
  Abstract Citation Links
• Article
  A. Nikishova, L. Veen, P. Zun, and A. G. Hoekstra. Uncertainty Quantification of a Multiscale Model for In-Stent Restenosis. Cardiovascular Engineering and Technology 9(4), pp. 761-774.
  Abstract Citation Links
• Article
  E. Lorenz, V. Sivadasan, D. Bonn, and A. G. Hoekstra. Combined Lattice–Boltzmann and rigid-body method for simulations of shear-thickening dense suspensions of hard particles. Computers & fluids 172, pp. 474-482.
  Abstract Citation Links
• Article
  M. de Haan, G. Zavodszky, V. Azizi, and A. G. Hoekstra. Numerical investigation of the effects of red blood cell cytoplasmic viscosity contrasts on single cell and bulk transport behaviour. Applied Sciences 8(9), 1616.
  Abstract Citation Links
• Article
  B. Czaja, G. Závodszky, V. Azizi Tarksalooyeh, and A. G. Hoekstra. Cell-resolved blood flow simulations of saccular aneurysms: effects of pulsatility and aspect ratio. Journal of the Royal Society Interface 15(146), 20180485.
  Abstract Citation Links
• Article
  A. G. Hoekstra, F. van de Vosse, and O. Röhrle. The Virtual Physiological Human Conference 2016. Journal of Computational Science 24, pp. 65-67.
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• Article
  A. G. Hoekstra, E. T. van Bavel, M. Siebes, F. Gijsen, and L. Geris. Virtual physiological human 2016: translating the virtual physiological human to the clinic. Interface Focus 8(1), 20170067.
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• Article
  B. Chopard, J.-L. Falcone, P. Kunzli, L. Veen, and A. G. Hoekstra. Multiscale Modeling: recent progress and open questions. Multiscale and Multidisciplinary Modeling, Experiments and Design 1(1), p. 57–68.
  Abstract Citation Links
• Article
  V. W. Azizi Tarksalooyeh, G. Závodszky, B. J. M. van Rooij, and A. G. Hoekstra. Inflow and outflow boundary conditions for 2D suspension simulations with the immersed boundary lattice Boltzmann method. Computers & fluids 172, p. 312–317.
  Abstract Citation Links

2017

• Article
  D. Groen, B. Bosak, V. Krzhizhanovskaya, A. Hoekstra, and P. Koumoutsakos. Multiscale Modelling and Simulation, 14th International Workshop. Procedia Computer Science 108, pp. 1811-1812.
  Abstract Citation Links
• Article
  A. Nikishova, A. Kalyuzhnaya, A. Boukhanovsky, and A. Hoekstra. Uncertainty quantification and sensitivity analysis applied to the wind wave model SWAN. Environmental Modelling & Software 95, pp. 344-357.
  Abstract Citation Links
• Article
  S. Alowayyed, D. Groen, P. V. Coveney, and A. G. Hoekstra. Multiscale computing in the exascale era. Journal of Computational Science 22, pp. 15-25.
  Abstract Citation Links
• Article
  G. Závodszky, B. van Rooij, V. Azizi, and A. Hoekstra. Cellular Level In-silico Modeling of Blood Rheology with An Improved Material Model for Red Blood Cells. Frontiers in Physiology 8, 563.
  Abstract Citation Links
• Article
  G. Závodszky, B. van Rooij, V. Azizi, S. Alowayyed, and A. Hoekstra. Hemocell: a high-performance microscopic cellular library. Procedia Computer Science 108, pp. 159-165.
  Abstract Citation Links
• Article
  L. Mountrakis, E. Lorenz, and A. G. Hoekstra. Revisiting the use of the immersed-boundary lattice-Boltzmann method for simulations of suspended particles. Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 96(1), 013302.
  Abstract Citation Links
• Article
  B. Chopard, D. Ribeiro de Sousa, J. Lätt, L. Mountrakis, F. Dubois, C. Yourassowsky, P. Van Antwerpen, O. Eker, L. Vanhamme, D. Perez-Morga, G. Courbebaisse, E. Lorenz, A. G. Hoekstra, and K. Zouaoui Boudjeltia. A physical description of the adhesion and aggregation of platelets. Royal Society Open Science 4, 170219.
  Abstract Citation Links
• Article
  P. S. Zun, T. Anikina, A. I. Svitenkov, and A. G. Hoekstra. A Comparison of Fully-Coupled 3D In-Stent Restenosis Simulations to In-vivo Data. Frontiers in Physiology 8, 284.
  Abstract Citation Links
• Article
  N. B. Melnikova, A. I. Svitenkov, D. R. Hose, and A. G. Hoekstra. A cell-based mechanical model of coronary artery tunica media. Journal of the Royal Society Interface 14, 20170028.
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2016

• Article
  D. Groen, V. Krzhizhanovskaya, B. Bosak, T. Scheibe, and A. Hoekstra. Multiscale modelling and simulation, 13th international workshop. Procedia Computer Science 80, pp. 1242-1243.
  Abstract Citation Links
• Article
  L. Mountrakis, E. Lorenz, and A. G. Hoekstra. Scaling of shear-induced diffusion and clustering in a blood-like suspension. Europhysics Letters 114(1), 14002.
  Abstract Citation Links
• Article
  O. Har-Shemesh, R. Quax, B. Miñano, A. G. Hoekstra, and P. M. A. Sloot. Nonparametric estimation of Fisher information from real data. Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 93(2), 023301.
  Abstract Citation Links
• Article
  O. Har-Shemesh, R. Quax, A. G. Hoekstra, and P. M. A. Sloot. Information geometric analysis of phase transitions in complex patterns: the case of the Gray-Scott reaction-diffusion model. Journal of Statistical Mechanics : Theory and Experiment 2016(4), 043301.
  Abstract Citation Links
• Article
  M. A. Yurkin and A. G. Hoekstra. Corrigendum to “The discrete dipole approximation: An overview and recent developments” [J. Quant. Spectrosc. Radiat. Transfer 106 (2007) 558–589]. Journal of Quantitative Spectroscopy & Radiative Transfer 171, pp. 82-83.
  Citation Links
• Chapter
  A. Mizeranschi, D. Groen, J. Borgdorff, A. G. Hoekstra, B. Chopard, and W. Dubitzky. Anatomy and Physiology of Multiscale Modeling and Simulation in Systems Medicine. In: Systems Medicine. ISBN 9781493932832. pp. 375-404.
  Abstract Citation Links
• Article
  A. G. Hoekstra, S. Alowayyed, E. Lorenz, N. Melnikova, L. Mountrakis, B. van Rooij, A. Svitenkov, G. Závodszky, and P. Zun. Towards the virtual artery: a multiscale model for vascular physiology at the physics–chemistry–biology interface. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 374(2080), 20160146.
  Abstract Citation Links
• Article
  A. I. Svitenkov, P. Zun, O. Rekin, and A. G. Hoekstra. Partitioning of Arterial Tree for Parallel Decomposition of Hemodynamic Calculations. Procedia Computer Science 80, p. 977–987.
  Abstract Citation Links

2015

• Article
  H. Tahir, I. Niculescu, C. Bona-Casas, R. M. H. Merks, and A. G. Hoekstra. An in silico study on the role of smooth muscle cell migration in neointimal formation after coronary stenting. Journal of the Royal Society Interface 12(108), 20150358.
  Abstract Citation Links
• Article
  L. Mountrakis, E. Lorenz, O. Malaspinas, S. Alowayyed, B. Chopard, and A. G. Hoekstra. Parallel performance of an IB-LBM suspension simulation framework. Journal of Computational Science 9, pp. 45-50.
  Abstract Citation Links
• Article
  M. A. Yurkin, V. P. Maltsev, and A. G. Hoekstra. Convergence of the discrete dipole approximation. I. Theoretical analysis: erratum. Journal of the Optical Society of America. A, Optics, Image Science and Vision 32(12), pp. 2407-2408.
  Citation Links
• Article
  V. V. Krzhizhanovskaya, D. Groen, B. Bosak, and A. G. Hoekstra. Multiscale Modelling and Simulation Workshop: 12 Years of Inspiration. Procedia Computer Science 51, pp. 1082-1087.
  Abstract Citation Links
• Article
  A. I. Svitenkov, S. A. Chivilikhin, A. G. Hoekstra, and A. V. Boukhanovsky. Fluid Simulations with Atomistic Resolution: Multiscale Model with Account of Nonlocal Momentum Transfer. Procedia Computer Science 51, pp. 1108-1117.
  Abstract Citation Links
• Article
  P. S. Zun and A. G. Hoekstra. On the Possible Interaction Mechanism between Collateral Vessels and Restenosis. Procedia Computer Science 66, pp. 412-418.
  Abstract Citation Links

2014

• Article
  J. Borgdorff, M. Mamonski, B. Bosak, K. Kurowski, M. Ben Belgacem, B. Chopard, D. Groen, P. V. Coveney, and A. G. Hoekstra. Distributed multiscale computing with MUSCLE 2, the Multiscale Coupling Library and Environment. Journal of Computational Science 5(5), pp. 719-731.
  Abstract Citation Links
• Article
  B. Chopard, J. Borgdorff, and A. G. Hoekstra. A framework for multi-scale modelling. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 372(2021), 2013037813.
  Abstract Citation Links
• Article
  C. M. Amatruda, C. Bona Casas, B. K. Keller, H. Tahir, G. Dubini, A. Hoekstra, D. R. Hose, P. Lawford, F. Migliavacca, A. J. Narracott, and J. Gunn. From histology and imaging data to models for in-stent restenosis. The international journal of artificial organs 37(10), pp. 786-800.
  Abstract Citation Links
• Article
  S. Karabasov, D. Nerukh, A. Hoekstra, B. Chopard, and P. V. Coveney. Multiscale modelling: approaches and challenges. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 372(2021), 20130390.
  Citation Links
• Article
  L. Mountrakis, E. Lorenz, and A. G. Hoekstra. Validation of an efficient two-dimensional model for dense suspensions of red blood cells. International Journal of Modern Physics C 25(12), 1441005.
  Abstract Citation Links
• Article
  H. Tahir, C. Bona-Casas, A. J. Narracott, J. Iqbal, J. Gunn, P. Lawford, and A. G. Hoekstra. Endothelial repair process and its relevance to longitudinal neointimal tissue patterns: Comparing histology with in silico modelling. Journal of the Royal Society Interface 11(94), 20140022.
  Abstract Citation Links
• Chapter
  A. Hoekstra, B. Chopard, and P. Lawford. Multi-Scale Modelling and Simulation. In: Computational biomedicine: modelling the human body. ISBN 9780199658183. pp. 138-160.
  Citation Links
• Article
  J. Borgdorff, M. Ben Belgacem, C. Bona-Casas, L. Fazendeiro, D. Groen, O. Hoenen, A. Mizeranschi, J. L. Sutter, D. Coster, P. V. Coveney, W. Dubitzky, A. G. Hoekstra, P. Strand, and B. Chopard. Performance of distributed multiscale simulations. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 372(2021), 20130407.
  Abstract Citation Links
• Article
  A. Hoekstra, B. Chopard, and P. Coveney. Multiscale modelling and simulation: a position paper. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 372(2021), 20130377.
  Abstract Citation Links
• Article
  S. Karabasov, D. Nerukh, A. Hoekstra, B. Chopard, and P. Coveney. Multi-scale systems in fluids and soft matter: approaches, numerics and applications. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 372(2021).
  Citation Links

2013

• Proceedings
  C. Bona-Casas, J. Borgdorff, H. Tahir, and A. G. Hoekstra. An off-lattice 3D model for in-stent restenosis.
  Citation
• Proceedings
  C. Bona-Casas, J. Borgdorff, H. Tahir, and A. G. Hoekstra. First results on a 3D model for in-stent restenosis.
  Citation Links
• Proceedings
  H. Tahir, C. Bona-Casas, and A. G. Hoekstra. Modelling in-stent restenosis: morphological differences in the tissue patterns based on the origin of endothelium recovery.
  Citation
• Proceedings
  H. Tahir, C. Bona-Casas, and A. G. Hoekstra. In-stent restenosis patterns based on the origin of endothelium recovery.
  Citation Links
• Article
  H. Tahir, C. Bona-Casas, and A. G. Hoekstra. Modelling the Effect of a Functional Endothelium on the Development of In-Stent Restenosis. PLoS ONE 8(6), e66138.
  Abstract Citation Links
• Article
  D. Groen, J. Borgdorff, C. Bona-Casas, J. Hetherington, R. W. Nash, S. J. Zasada, I. Saverchenko, M. Mamonski, K. Kurowski, M. O. Bernabeu, A. G. Hoekstra, and P. V. Coveney. Flexible composition and execution of high performance, high fidelity multiscale biomedical simulations. Interface Focus 3(2), 20120087.
  Abstract Citation Links
• Article
  L. Mountrakis, E. Lorenz, and A. G. Hoekstra. Where do the platelets go? A simulation study of fully resolved blood flow through aneurysmal vessels. Interface Focus 3(2), p. 20120089.
  Abstract Citation Links
• Article
  J. Borgdorff, J.-L. Falcone, E. Lorenz, C. Bona-Casas, B. Chopard, and A. G. Hoekstra. Foundations of distributed multiscale computing: formalization, specification, and analysis. Journal of Parallel and Distributed Computing 73(4), pp. 465-483.
  Abstract Citation Links
• Article
  J. Borgdorff, M. Mamonski, B. Bosak, D. Groen, M. Ben Belgacem, K. Kurowski, and A. G. Hoekstra. Multiscale Computing with the Multiscale Modeling Library and Runtime Environment. Procedia Computer Science 18, pp. 1097-1105.
  Abstract Citation Links
• Proceedings
  Francesco Pennella, Piergiorgio Gentile, Marco A. Deriu, Diego Gallo, Alessandro Schiavi, Gianluca Ciardelli, Eric Lorenz, Alfons G. Hoekstra, Alberto Audenino, and Umberto Morbiducci. A virtual test bench to study transport phenomena in 3D porous scaffolds using lattice boltzmann simulations. In: ASME 2013 Summer Bioengineering Conference, SBC 2013. ISBN 9780791855607.
  Citation Links

2012

• Article
  J. Borgdorff, D. Groen, S. Ferlin, I. Saverchenko, J. Suter, A. G. Hoekstra, and P. V. Coveney. Multiscale Simulations on Distributed European e-Infrastructures. Inside 10(1), pp. 72-77.
  Citation Links
• Article
  J. Borgdorff, C. Bona-Casas, M. Mamonski, K. Kurowski, T. Piontek, B. Bosak, K. Rycerz, E. Ciepiela, T. Gubala, D. Harezlak, M. Bubak, E. Lorenz, and A. G. Hoekstra. A distributed multiscale computation of a tightly coupled model using the Multiscale Modeling Language. Procedia Computer Science 9, pp. 596-605.
  Abstract Citation Links

2011

• Proceedings
  B. Chopard, J.-L. Falcone, A. G. Hoekstra, and J. Borgdorff. A framework for multiscale and multiscience modeling and numerical simulations. In: Unconventional Computation. ISBN 9783642213410. pp. 2-8.
  Abstract Citation Links
• Article
  H. Tahir, A. G. Hoekstra, E. Lorenz, P. V. Lawford, D. R. Hose, J. Gunn, and D. J. W. Evans. Multi-scale simulations of the dynamics of in-stent restenosis: impact of stent deployment and design. Interface Focus 1(3), pp. 365-373.
  Abstract Citation Links
• Chapter
  V. P. Maltsev, A. G. Hoekstra, and M. A. Yurkin. Optics of white blood cells: optical models, simulations, and experiments. In: Advanced optical flow cytometry: methods and disease diagnoses. ISBN 9783527409341. pp. 63-93.
  Citation Links
• Article
  S. Murtaza, A. G. Hoekstra, and P. M. A. Sloot. Cellular automata simulations on a FPGA cluster. International Journal of High Performance Computing Applications 25(2), pp. 193-204.
  Abstract Citation Links
• Article
  L. Naumov, A. Hoekstra, and P. Sloot. Cellular automata models of tumour natural shrinkage. Physica A : Statistical Mechanics and its Applications 390(12), pp. 2283-2290.
  Abstract Citation Links
• Article
  A. Caiazzo, D. Evans, J.-L. Falcone, J. Hegewald, E. Lorenz, B. Stahl, D. Wang, J. Bernsdorf, B. Chopard, J. Gunn, R. Hose, M. Krafczyk, P. Lawford, R. Smallwood, D. Walker, and A. Hoekstra. A Complex Automata approach for in-stent restenosis: two-dimensional multiscale modelling and simulations. Journal of Computational Science 2(1), pp. 9-17.
  Abstract Citation Links
• Article
  M. A. Yurkin and A. G. Hoekstra. The discrete-dipole-approximation code ADDA: capabilities and known limitations. Journal of Quantitative Spectroscopy & Radiative Transfer 112(13), pp. 2234-2247.
  Abstract Citation Links
• Proceedings
  J. Borgdorff, J.-L. Falcone, E. Lorenz, B. Chopard, and A. G. Hoekstra. A principled approach to distributed multiscale computing, from formalization to execution. In: Workshop Proceedings, 7th IEEE International Conference on eScience. ISBN 9781467300261. pp. 97-104.
  Abstract Citation Links
• Proceedings
  J. Bernsdorf, G. Berti, B. Chopard, J. Hegewald, M. Krafczyk, D. Wang, E. Lorenz, and A. Hoekstra. Towards distributed multiscale simulation of biological processes. In: The Seventh IEEE International Conference on e-Science. Workshops: eScienceW 2011: proceedings: Stockholm, Sweden, 5-8 December 2011. ISBN 9781467300261. pp. 89-96.
  Abstract Citation Links
• Article
  E. Lorenz and A. G. Hoekstra. Heterogeneous multiscale simulations of suspension flow. Multiscale Modeling & Simulation 9(4), pp. 1301-1326.
  Abstract Citation Links

2010

• Article
  L. Naumov, A. Hoekstra, and P. Sloot. The influence of mitoses rate on growth dynamics of a cellular automata model of tumour growth. Procedia Computer Science 1(1), pp. 971-978.
  Abstract Citation Links
• Chapter
  A. G. Hoekstra, A. Caiazzo, E. Lorenz, J.-L. Falcone, and B. Chopard. Complex Automata: Multi-scale Modeling with Coupled Cellular Automata. In: Simulating complex systems by cellular automata. ISBN 9783642122026. pp. 29-57.
  Abstract Citation Links
• Book
  A. G. Hoekstra, J. Kroc, and P. M. A. Sloot. Simulating complex systems by cellular automata. ISBN 9783642122033.
  Abstract Citation Links
• Proceedings
  A. G. Hoekstra, P. Lawford, and R. Hose. Modelling and simulating in-stent restenosis with complex automata. In: Conference abstracts VPH 2010, 1st Virtual Physiological Human Conference. pp. 222-224.
  Abstract Citation Links
• Proceedings
  A. G. Hoekstra. Multiscale coupling of a Lattice Boltzmann simulation of blood flow to cell- and tissue-level processes: the case of in-stent restenosis. In: Proceedings of the V European Conference on Computational Fluid Dynamics (ECCOMAS CFD 2010), Lisbon, Portugal.
  Abstract Citation Links
• Article
  M. A. Yurkin, D. de Kanter, and A. G. Hoekstra. Accuracy of the discrete dipole approximation for simulation of optical properties of gold nanoparticles. Journal of Nanophotonics 4(1), p. 041585.
  Abstract Citation Links
• Chapter
  A. G. Hoekstra, J. Kroc, and P. M. A. Sloot. Introduction to modeling of complex systems using cellular automata. In: Simulating complex systems by cellular automata. ISBN 9783642122033. pp. 1-16.
  Abstract Citation Links
• Article
  P. M. A. Sloot and A. G. Hoekstra. Multi-scale modelling in computational biomedicine. Briefings in Bioinformatics 11(1), pp. 142-152.
  Abstract Citation Links
• Article
  G. J. Streekstra, J. G. G. Dobbe, and A. G. Hoekstra. Quantification of the fraction poorly deformable red blood cells using ektacytometry. Optics Express 18(13), pp. 14173-14182.
  Abstract Citation Links
• Article
  J.-L. Falcone, B. Chopard, and A. Hoekstra. MML: towards a Multiscale Modeling Language. Procedia Computer Science 1(1), pp. 819-826.
  Abstract Citation Links
• Article
  E. van der Pol, A. G. Hoekstra, A. Sturk, C. Otto, T. G. van Leeuwen, and R. Nieuwland. Optical and non-optical methods for detection and characterization of microparticles and exosomes. Journal of Thrombosis and Haemostasis 8(12), pp. 2596-2607.
  Abstract Citation Links
• Proceedings
  A. G. Hoekstra and P. Coveney. Towards distributed multiscale computing for the VPH. In: Conference abstracts VPH 2010, 1st Virtual Physiological Human Conference. pp. 198-200.
  Abstract Citation Links
• Article
  M. A. Yurkin, M. Min, and A. G. Hoekstra. Application of the discrete dipole approximation to very large refractive indices: Filtered coupled dipoles revived. Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 82(3), p. 036703.
  Abstract Citation Links
• Article
  A. Hoekstra, L.-S. Luo, and M. Krafczyk. Mesoscopic methods in engineering and science. Computers & Mathematics with Applications 59(7), pp. 2139-2140.
  Citation Links
• Proceedings
  A. G. Hoekstra, J. Kroc, and P. M. A. Sloot. Preface. In: Simulating Complex Systems by Cellular Automata. ISBN 9783642122033. pp. xi-xiii.
  Citation Links

2009

• Article
  J. B. W. Geerdink and A. G. Hoekstra. Comparing Entropic and Multiple Relaxation Times Lattice Boltzmann Methods for blood flow simulations. International Journal of Modern Physics C 20(5), pp. 721-733.
  Abstract Citation Links
• Article
  E. Lorenz, A. G. Hoekstra, and A. Caiazzo. Lees-Edwards boundary conditions for lattice Boltzmann suspension simulations. Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 79(3), p. 036706.
  Abstract Citation Links
• Article
  D. I. Strokotov, M. A. Yurkin, K. V. Gilev, D. R. van Bockstaele, A. G. Hoekstra, N. B. Rubtsov, and V. P. Maltsev. Is there a difference between T- and B-lymphocyte morphology?. Journal of Biomedical Optics 14(6), p. 064036.
  Abstract Citation Links
• Proceedings
  A. Caiazzo, D. Evans, J.-L. Falcone, J. Hegewald, E. Lorenz, B. Stahl, D. Wang, J. Bernsdorf, B. Chopard, J. Gunn, R. Hose, M. Krafczyk, P. Lawford, R. Smallwood, D. Walker, and A. G. Hoekstra. Towards a Complex Automata multiscale model of in-stent restenosis. In: Computational Science – ICCS 2009. ISBN 9783642019708. I, pp. 705-714.
  Abstract Citation Links
• Article
  L. Axner, A. G. Hoekstra, A. Jeays, P. Lawford, R. Hose, and P. M. A. Sloot. Simulations of time harmonic blood flow in the Mesenteric artery: comparing finite element and lattice Boltzmann methods. BioMedical Engineering OnLine 8, p. 23.
  Abstract Citation Links
• Article
  S. Murtaza, A. G. Hoekstra, and P. M. A. Sloot. Compute bound and I/O bound Cellular Automata simulations on FPGA logic. ACM Transactions on Reconfigurable Technology and Systems 1(4), p. 23.
  Abstract Citation Links
• Article
  E. Lorenz, A. Caiazzo, and A. G. Hoekstra. Corrected momentum exchange method for lattice Boltzmann simulations of suspension flow. Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 79(3), p. 036705.
  Abstract Citation Links
• Article
  A. Caiazzo, J.-L. Falcone, B. Chopard, and A. G. Hoekstra. Asymptotic analysis of Complex Automata models for reaction-diffusion systems. Applied Numerical Mathematics 59(8), pp. 2023-2034.
  Abstract Citation Links
• Proceedings
  D. J. W. Evans, A. Caiazzo, J. L. Falcone, J. Hegewald, E. Lorenz, B. Stahl, D. Wang, J. Bernsdorf, B. Chopard, J. Gunn, D. Walker, R. Hose, M. Krafczyk, A. Hoekstra, and P. Lawford. COAST: Modelling Restenosis and Stent Based Therapies. In: International Conference on Advancements of Medicine and Health Care through Technology. ISBN 9783642042928. pp. 319-322.
  Abstract Citation Links

2008

• Proceedings
  B. Chopard, J.-L. Falcone, R. Razakarinina, A. G. Hoekstra, and A. Caiazzo. On the collision-propagation and gather-update formulations of a Cellular Automata rule. In: Cellular Automata, 8th International Conference on Cellular Automata for Reseach and Industry, ACRI 2008. ISBN 978-3-540-79991-7. Lecture Notes in Computer Science 5191, pp. 144-151.
  Citation
• Other: misc
  A. G. Hoekstra. Book review: Optical Polarization in Biomedical Applications, V.V. Tuchin, L.V. Wang, D.A. Zimnyakov. Journal of Quantitative Spectroscopy \& Radiative Transfer 109, pp. 531-531.
  Citation
• Chapter
  A. G. Hoekstra, S. F. Portegies Zwart, M. T. Bubak, and P. M. A. Sloot. Towards Distributed Petascale Computing. In: Petascale Computing: Algorithms and Applications. ISBN 978-1-58488-909-0. pp. 147-164.
  Citation Links
• Other: misc
  V. V. Krzhizhanovskaya and A. G. Hoekstra. Special Issue on Simulation of Multiphysics Multiscale Systems. International Journal for Multiscale Computational Engineering 6(1).
  Citation Links
• Proceedings
  D. J. W. Evans, A. G. Hoekstra, J. Gunn, D. Walker, D. R. Hose, R. H. Smallwood, B. Chopard, M. Krafczyk, J. M. Bernsdorf, and P. V. Lawford. Multiscale Modelling: Application of the Complex Automata Simulation Technique (COAST). In: Proceedings of the European Biomechanics Society conference 2008.
  Citation
• Proceedings
  B. Chopard, J.-L. Falcone, R. Razakanirina, A. Hoekstra, and A. Caiazzo. On the collision-propagation and gather-update formulations of a cellular automata rule. In: Cellular Automata. ISBN 9783540799924. pp. 144-151.
  Abstract Citation Links
• Proceedings
  S. Murtaza, A. G. Hoekstra, and P. M. A. Sloot. Floating point based Cellular Automata simulations using a dual FPGA-enabled system. In: 2008 Second International Workshop on High-Performance Reconfigurable Computing Technology and Applications (HPRCTA): proceedings: held in conjunction with SC 08, Austin, TX, November 17, 2008. ISBN 9781424428267.
  Abstract Citation Links
• Article
  A. V. Chernyshev, P. A. Tarasov, K. A. Semianov, V. M. Nekrasov, A. G. Hoekstra, and V. P. Maltsev. Erythrocyte lysis in isotonic solution of ammonium chloride: Theoretical modelling and experimental verification. Journal of Theoretical Biology 251(1), pp. 93-107.
  Abstract Citation Links
• Proceedings
  A. Caiazzo, J. L. Falcone, B. Chopard, and A. G. Hoekstra. Error investigations in complex automata models for reaction-diffusion systems. In: Cellular Automata. ISBN 9783540799924. pp. 260-267.
  Abstract Citation Links
• Proceedings
  M. A. Yurkin, M. Min, and A. G. Hoekstra. Application of the discrete dipole approximation to extreme refractive indices: Filtered coupled dipoles revived. In: 11th Electromagnetic & Light Scattering Conference: Extended abstracts: 7-12 September 2008, de Havilland Campus, University of Hertfordshire. pp. 109-112.
  Abstract Citation Links
• Proceedings
  A. G. Hoekstra, J.-L. Falcone, A. Caiazzo, and B. Chopard. Multi-scale modeling with cellular automata: The complex automata approach. In: Cellular Automata. ISBN 9783540799924. pp. 192-199.
  Abstract Citation Links
• Proceedings
  M. A. Yurkin, D. de Kanter, and A. G. Hoekstra. Study of light scattering by a granulated coated sphere - a model of granulated blood cells. In: 11th Electromagnetic & Light Scattering Conference: Extended abstracts: 7-12 September 2008, de Havilland Campus, University of Hertfordshire. pp. 299-302.
  Abstract Citation Links
• Proceedings
  A. Caiazzo, J. L. Falcone, B. Chopard, and A. G. Hoekstra. Scale-splitting error in complex automata models for reaction-diffusion systems. In: Computational Science – ICCS 2008. ISBN 9783540693871. II, pp. 291-300.
  Abstract Citation Links
• Proceedings
  V. V. Krzhizhanovskaya and A. G. Hoekstra. Simulation of Multiphysics Multiscale Systems, 5th International Workshop. In: Computational Science – ICCS 2008. ISBN 9783540693871. II, pp. 165-166.
  Abstract Citation Links
• Proceedings
  J. Hegewald, M. Krafczyk, J. Tölke, A. Hoekstra, and B. Chopard. An agent-based coupling platform for complex automata. In: Computational Science – ICCS 2008. ISBN 9783540693871. II, pp. 227-233.
  Abstract Citation Links
• Article
  D. Y. Orlova, M. A. Yurkin, A. G. Hoekstra, and V. P. Maltsev. Light scattering by neutrophils: Model, simulation, and experiment. Journal of Biomedical Optics 13(5), p. 054057.
  Abstract Citation Links
• Article
  D. J. W. Evans, P. V. Lawford, J. Gunn, D. Walker, D. R. Hose, R. H. Smallwood, B. Chopard, M. Krafczyk, J. Bernsdorf, and A. Hoekstra. The application of multiscale modelling to the process of development and prevention of stenosis in a stented coronary artery. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 366(1879), pp. 3343-3360.
  Abstract Citation Links
• Article
  L. Axner, J. Bernsdorf, T. Zeiser, P. Lammers, J. Linxweiler, and A. G. Hoekstra. Performance evaluation of a parallel sparse lattice Boltzmann solver. Journal of computational Physics 227(10), pp. 4895-4911.
  Abstract Citation Links
• Article
  D. J. W. Evans, A. Hoekstra, J. Gunn, D. Walker, D. R. Hose, R. H. Smallwood, B. Chopard, M. Krafczyk, J. Bernsdorf, and P. V. Lawford. Multiscale Modelling: Application of the Complex Automata Simulation Technique (COAST). Journal of Biomechanics 41(S1), p. 482.
  Citation Links
• Article
  A. G. Hoekstra. [Review of: V.V. Tuchin, L.V. Wang (2006) Optical polarization in biomedical applications]. Journal of Quantitative Spectroscopy & Radiative Transfer 109(3), pp. 531-531.
  Citation Links

2007

• Book
  A. G. Hoekstra, V. P. Maltsev, and G. Videen. Optics of Biological Particles.
  Citation Links
• Proceedings
  A. G. Hoekstra, E. Lorenz, J.-L. Falcone, and B. Chopard. Towards a Complex Automata Framework for Multi-Scale Modeling: Formalism and the Scale Separation Map. In: Computational Science – ICCS 2007. ISBN 9783540725848. I, pp. 922-930.
  Abstract Citation Links
• Proceedings
  M. A. Yurkin, A. G. Hoekstra, R. S. Brock, and J. Q. Lu. Systematic comparison of the discrete dipole approximation and the finite difference time domain method. In: The 10th Conference on Electromagnetic and Light Scattering. pp. 249-252.
  Citation Links
• Article
  L. Axner, J. Lätt, A. G. Hoekstra, B. Chopard, and P. M. A. Sloot. Simulating Time Harmonic Flows with the Regularized L-BGK Method. International Journal of Modern Physics C 18, pp. 661-666.
  Citation Links
• Article
  M. A. Yurkin and A. G. Hoekstra. The discrete dipole approximation: an overview and recent developments. Journal of Quantitative Spectroscopy & Radiative Transfer 106, pp. 558-589.
  Citation Links
• Article
  M. A. Yurkin, K. A. Semyanov, V. P. Maltsev, and A. G. Hoekstra. Discrimination of granulocyte subtypes from light scattering: theoretical analysis using a granulated sphere model. Optics Express 15, pp. 16561-16580.
  Citation Links
• Book
  A. G. Hoekstra. Guest Editor Special Issue ‘Simulating Multiphysics Multiscale Systems’ of the International Journal for Multiscale Computational Engineering.
  Citation Links
• Article
  L. Axner, A. G. Hoekstra, and P. M. A. Sloot. Simulating Time Harmonic Flows with the Lattice Boltzmann Method. Physical Review E - Statistical, Nonlinear, and Soft Matter Physics p. 036709.
  Citation Links
• Proceedings
  K. A. Semyanov, P. A. Tarasov, M. A. Yurkin, A. G. Hoekstra, and V. P. Maltsev. Characterization of native red blood cell morphology by scanning flow cytometry. In: 8th International Congress on Optical Particle Characterization. p. 56.
  Citation Links
• Article
  A. Penttilä, E. Zubko, K. Lumme, K. Muinonen, M. A. Yurkin, B. T. Draine, J. Rahola, A. G. Hoekstra, and Y. Shkuratov. Comparison between discrete dipole implementations and exact techniques. Journal of Quantitative Spectroscopy & Radiative Transfer 106, pp. 417-436.
  Citation Links
• Chapter
  A. G. Hoekstra and P. M. A. Sloot. Modelleren en Simuleren. In: ICT-Zakboek.
  Citation Links
• Article
  A. G. Hoekstra, E. Lorenz, J.-L. Falcone, and B. Chopard. Toward a Complex Automata Formalism for Multi-Scale Modeling. International Journal for Multiscale Computational Engineering 5, pp. 491-502.
  Citation Links
• Chapter
  A. G. Hoekstra, S. Portegies Zwart, M. Bubak, and P. M. A. Sloot. Towards distributed petascale computing. In: Petascale computing: Algorithms and applications. ISBN 9781584889090. pp. 147-164.
  Citation Links
• Chapter
  P. M. A. Sloot and A. G. Hoekstra. Modeling Dynamic Systems with Cellular Automata. In: Handbook of Dynamic System Modeling. ISBN 9781420010855. pp. 21.1-21.19.
  Citation Links
• Proceedings
  S. Murtaza, A. G. Hoekstra, and P. M. A. Sloot. Performance evaluation of FPGA-based Cellular Automata accelerators. In: Proceedings of the Third Annual Reconfigurable Systems Summer Institute (RSSI'07).
  Citation Links
• Article
  M. A. Yurkin, A. G. Hoekstra, R. S. Brock, and J. Q. Lu. Systematic comparison of the discrete dipole approximation and the finite difference time domain method for large dielectric scatterers. Optics Express 15, pp. 17902-17911.
  Citation Links
• Proceedings
  S. Murtaza, A. G. Hoekstra, and P. M. A. Sloot. Performance Modeling of 2D Cellular Automata on FPGA. In: International Conference on Field Programmable Logic and Applications, FPL 2007. pp. 74-78.
  Citation Links
• Proceedings
  M. A. Yurkin, K. A. Semyanov, V. P. Maltsev, and A. G. Hoekstra. Light scattering by granulated spheres applied to discriminate subtypes of granulated blood cells. In: International Conference on Laser Applications in Life Sciences 2007. pp. TuL07-II3.
  Citation Links
• Article
  M. A. Yurkin, V. P. Maltsev, and A. G. Hoekstra. The discrete dipole approximation for simulation of light scattering by particles much larger than the wavelength. Journal of Quantitative Spectroscopy & Radiative Transfer 106, pp. 546-557.
  Citation Links

2006

• Article
  A. M. Artoli, A. G. Hoekstra, and P. M. A. Sloot. Optimizing lattice Boltzmann simulations for unsteady flows. Computers & fluids 35(2), pp. 227-240.
  Abstract Citation Links
• Article
  R. M. H. Merks, A. G. Hoekstra, J. A. Kaandorp, P. M. A. Sloot, and P. Hogeweg. Problem-Solving Environments for Biological Morphogenesis. IEEE Computational Science and Engineering 8, pp. 61-72.
  Citation Links
• Article
  M. A. Yurkin, V. P. Maltsev, and A. G. Hoekstra. Convergence of the discrete dipole approximation. II. An extrapolation technique to increase the accuracy. Journal of the Optical Society of America. A, Optics, Image Science and Vision 23, pp. 2592-2601.
  Citation Links
• Proceedings
  A. G. Hoekstra, B. Chopard, P. Lawford, R. Hose, M. Krafczyk, and J. M. Bernsdorf. Introducing Complex Automata for Modelling Multi-Scale Complex Systems. In: proceedings European Complex Systems Conference 2006.
  Citation Links
• Proceedings
  M. A. Yurkin, D. de Kanter, and A. G. Hoekstra. Applicability of effective medium approximation to light scattering by granulated biological cells- first results. In: Proceedings of the NATO Advanced Research Workshop: opticsof Biological Particles. pp. 46-47.
  Citation Links
• Proceedings
  L. Abrahamyan, J. M. Bernsdorf, T. Zeiser, P. Lammers, A. G. Hoekstra, and P. M. A. Sloot. MPI parallelization and performance aspects of a graph based LB flow solver. In: Proceedings Discrete Simulation of Fluid Dynamics DSFD2006, Geneva, Switserland.
  Citation Links
• Proceedings
  M. A. Yurkin and A. G. Hoekstra. An Extrapolation Technique to Increase the Accuracy of The Discrete Dipole Approximation. In: Proceedings of 9th International Conference on Electromagnetic and Light Scattering by Non-Spherical Particles. pp. 283-286.
  Citation Links
• Article
  A. G. Hoekstra, V. P. Maltsev, and G. Videen. Preface to special issue dedicated to the Optical Properties of Biological Cells. Journal of Quantitative Spectroscopy & Radiative Transfer 102, pp. 1-2.
  Citation Links
• Chapter
  P. A. Tarasov, M. A. Yurkin, P. A. Avrorov, K. A. Semyanov, A. G. Hoekstra, and V. P. Maltsev. Optics of erythrocytes. In: Optics of Biological Particles. pp. 231-246.
  Citation Links
• Article
  I. V. Kolesnikova, S. V. Potapov, M. A. Yurkin, A. G. Hoekstra, V. P. Maltsev, and K. A. Semyanov. Determination of volume, shape and refractive index of individual blood platelets. Journal of Quantitative Spectroscopy & Radiative Transfer 102, pp. 37-45.
  Citation Links
• Chapter
  K. A. Semyanov, A. E. Zharinov, P. A. Tarasov, M. A. Yurkin, I. G. Skribunov, D. R. van Bockstaele, A. G. Hoekstra, and V. P. Maltsev. Optics of leucocytes. In: Optics of Biological Particles. pp. 253-264.
  Citation Links
• Proceedings
  L. Abrahamyan, A. G. Hoekstra, and P. M. A. Sloot. Choosing Optimal L-BGK Simulation Parameters for Time Harmonic Flows. In: Proceedings Discrete Simulation of Fluid Dynamics DSFD2006, Geneva, Switserland.
  Citation Links
• Article
  M. A. Yurkin, V. P. Maltsev, and A. G. Hoekstra. Convergence of the discrete dipole approximation. I. Theoretical analysis. Journal of the Optical Society of America. A, Optics, Image Science and Vision 23(10), pp. 2578-2591.
  Citation Links
• Proceedings
  M. A. Yurkin, V. P. Maltsev, and A. G. Hoekstra. Can the Discrete Dipole Approximation Simulate Scattering of Particles with Size Parameter equal to 100?. In: Proceedings of 9th International Conference on Electromagnetic and Light Scattering by Non-Spherical Particles. pp. 279-282.
  Citation Links
• Article
  A. M. M. Artoli, A. G. Hoekstra, and P. M. A. Sloot. Mesoscopic simulations of systolic flow in the Human abdominal aorta. Journal of Biomechanics 39, pp. 873-884.
  Citation Links
• Book
  A. G. Hoekstra. Special Issue ‘Optics of Biological Particles’ of J. Quant. Specrt. Rad. Transf. Volume 102, number 1, November 2006.
  Citation Links
• Proceedings
  A. Pentila, E. Zubko, K. Lumme, K. Muinonen, M. A. Yurkin, Y. Shkuratov, and A. G. Hoekstra. Comparison between discrete dipole and exact techniques. In: Proceedings of the 9th Conference on Electromagnetic and Light Scattering by Nonspherical Particles: Theory, Measurement and Applications. pp. 227-230.
  Citation Links

2005

• Proceedings
  P. M. A. Sloot, C. A. B. Boucher, M. T. Bubak, A. G. Hoekstra, P. Plaszczak, A. Posthumus, D. A. M. C. van de Vijver, S. Wesner, and A. Tirado Ramos. VIROLAB - A Virtual Laboratory for Decision Support in Viral Diseases Treatment. In: Cracow Grid Workshop 2005. p. 33.
  Citation Links
• Article
  P. M. A. Sloot, J. A. Kaandorp, and A. G. Hoekstra. Towards Virtual Physiological Human: Multilevel Modelling and Simulation of the Human Anatomy and Phsyiology.
  Citation Links
• Proceedings
  M. A. Yurkin, D. de Kanter, and A. G. Hoekstra. Applicability of effective medium approximation to light scattering by granulated biological cells - first results. In: Proceedings of the NATO Advanced Research Workshop: Optics of Biological Particles. ISBN 978-5-98901-002-8. pp. 46-47.
  Citation Links
• Article
  M. A. Yurkin, K. Semyanov, P. A. Tarasov, A. V. Chernyshev, A. G. Hoekstra, and V. P. Maltsev. Experimental and theoretical study of light scattering by individual mature red blood cells with scanning flow cytometry and discrete dipole approximation. Applied Optics 44, pp. 52449-5256.
  Citation Links
• Report
  P. M. A. Sloot, J. A. Kaandorp, A. G. Hoekstra, N. Ayache, J-P. Boissel, S. Brunak, G. Clapworthy, J Fingberg, G. Lonsdale, A. F. Frangi, G. Deco, P. Hunter, P. L. Nielsen, M. Halstead, R. Hose, I. Magnin, F. Martin-Sanchez, S. van Sint Jan, and M. Viceconti. Towards Virtual Physiological Human: multilevel modelling and simulation of the human anatomy and phsyiology.
  Citation Links
• Chapter
  A. Tirado Ramos, D. P. Shamonin, R. Shulakov, D. J. Groen, A. G. Hoekstra, G. D. van Albada, E. V. Zudilova-Seinstra, and P. M. A. Sloot. Interactive Problem Solving Environments on the Grid for Image-based Computational Haemodynamics. In: The CrossGrid Book.
  Citation Links
• Article
  A. G. Hoekstra and P. M. A. Sloot. Introducing Grid Speedup Gamma: A Scalability Metric for Parallel Applications on the Grid. Lecture Notes in Computer Science 3470, pp. 534-543.
  Citation Links
• Proceedings
  M. A. Yurkin, K. Semyanov, A. G. Hoekstra, and V. P. Maltsev. Experimental and Theoretical Study of Light Scattering by Individual Mature Red Blood Cells with Scanning Flow Cytometry and Discrete Dipole Approximation. In: Proceedings 8th Conference on Electromagnetic and Light Scattering by Nonspherical Particles: Theory, Measurement and Applications. pp. 333-336.
  Citation Links
• Chapter
  A. G. Hoekstra. Image-based computational hemodynamics with the Lattice Boltzmann method. In: Computational Fluid and Solid Mechanics 2005. pp. 672-675.
  Citation Links
• Book
  P. M. A. Sloot, A. G. Hoekstra, T. Priol, A. Reinefeld, and M. T. Bubak. Advances in Grid Computing - EGC 2005. ISBN 3540269185, 9783540269182.
  Citation Links
• Article
  L. Abrahamyan, J. A. Schaap, A. G. Hoekstra, D. P. Shamonin, F. M. A. Box, R. J. van der Geest, J. H. C. Reiber, and P. M. A. Sloot. A Problem Solving Environment for Image-Based Computational Hemodynamics. Lecture Notes in Computer Science 3514, pp. 287-294.
  Citation Links
• Proceedings
  M. A. Yurkin and A. G. Hoekstra. Capabilities of the discrete dipole approximation for simulation light scattering by biological cells. In: Proceedings of the NATO Advanced Research Workshop: Optics of Biological Particles. pp. 19-20.
  Citation Links
• Proceedings
  P. M. A. Sloot, C. A. Boucher, M. T. Bubak, A. G. Hoekstra, P. Plaszczak, A. Postumus, D. van de Vijver, S. Wesner, and A. Tirado Ramos. VIROLAB - A virtual Laboratory for Decision Support in Viral Diseases Treatment. In: Cracow Grid Workshop.
  Citation Links

2004

• Proceedings
  P. M. A. Sloot, B. Chopard, and A. G. Hoekstra. Cellular Automata: 6th International Conference on Cellular Automata for Research and Industry, ACRI 2004, Amsterdam, The Netherlands, October 25-28, 2004. ISBN 978-3-540-23596-5. Lecture Notes in Computer Science 3305.
  Citation Links
• Article
  A. M. M. Artoli, L. Abrahamyan, and A. G. Hoekstra. Accuracy versus Performance in Lattice Boltzmann BGK Simulations of Systolic Flows. Lecture Notes in Computer Science 3039, pp. 548-555.
  Citation Links
• Article
  P. M. A. Sloot and A. G. Hoekstra. Virtual Vascular Surgery on the Grid. ERCIM News 59, pp. 50-51.
  Citation Links
• Article
  K. Semyanov, P. A. Tarasov, A. E. Zharinov, A. V. Chernyshev, A. G. Hoekstra, and V. P. Maltsev. Single-Particle Sizing from Light Scattering by Spectral Decomposition. Applied Optics 43(26), pp. 5110-5115.
  Citation Links
• Article
  A. M. M. Artoli, D. Kandhai, H. C. J. Hoefsloot, A. G. Hoekstra, and P. M. A. Sloot. Lattice BGK simulations of flow in a symmetric bifurcation. Future Generation Computer Systems 20(6), pp. 909-916.
  Citation Links
• Article
  A. G. Hoekstra, J. van 't Hoff, A. M. M. Artoli, and P. M. A. Sloot. Unsteady flow in a 2D elastic tube with the LBGK method. Future Generation Computer Systems 20(6), pp. 917-924.
  Citation Links
• Article
  A. Tirado Ramos, P. M. A. Sloot, A. G. Hoekstra, and M. T. Bubak. An integrative approach to high-performance biomedical problem solving environments on the Grid. Parallel Computing 30(9-10), pp. 1037-1055.
  Citation Links
• Article
  B. Chopard and A. Hoekstra. Computational Science of Lattice Boltzmann Modelling. Future Generation Computer Systems 20(6), pp. EX1-EX2, 907-1096.
  Citation Links
• Article
  B. Chopard and A. Hoekstra. Computational science of lattice Boltzmann modelling. Future Generation Computer Systems 20(6), pp. 907-908.
  Citation Links
• Book
  P. M. A. Sloot, B. Chopard, and A. G. Hoekstra. Cellular Automata, Proccedings ACRI2004. ISBN 3540235965, 9783540235965.
  Citation Links
• Article
  R. M. H. Merks, A. G. Hoekstra, J. A. Kaandorp, and P. M. A. Sloot. Polyp oriented modelling of coral growth. Journal of Theoretical Biology 228(4), pp. 559-576.
  Abstract Citation Links
• Proceedings
  Peter M. A. Sloot, Alfredo Tirado-Ramos, Alfons G. Hoekstra, and Marian Bubak. An interactive grid for non-invasive vascular reconstruction. In: 2004 IEEE International Symposium on Cluster Computing and the Grid, CCGrid 2004. ISBN 078038430X, 9780780384309. pp. 309-319.
  Abstract Citation
• Proceedings
  P. M. A. Sloot, A. Tirado-Ramos, A. G. Hoekstra, and M. Bubak. An interactive grid environment for non-invasive vascular reconstruction. In: CCGrid 2004 . ISBN 078038430X, 9780780384309. pp. 309-319.
  Abstract Citation Links

2003

• Article
  A. M. M. Artoli, A. G. Hoekstra, and P. M. A. Sloot. Accelerated Lattice BGK method for unsteady simulations through Mach number annealing. International Journal of Modern Physics C 14(6), pp. 835-847.
  Citation Links
• Proceedings
  R. M. H. Merks, A. G. Hoekstra, J. A. Kaandorp, and P. M. A. Sloot. Problem Solving Environment for Modelling Stony Coral Morphogenesis. In: Computational Science - ICCS 2003. ISBN 3540401946, 9783540401940. 2657, pp. 639-648.
  Citation Links
• Proceedings
  A. G. Hoekstra, J. van 't Hoff, A. M. M. Artoli, and P. M. A. Sloot. Lattice BGK Simulations of Unsteady Flow in a 2D Elastic Tube. In: Computational Science - ICCS 2003. ISBN 3540401946, 9783540401940. 2657, pp. 997-1006.
  Citation Links
• Proceedings
  R. M. H. Merks, A. G. Hoekstra, J. A. Kaandorp, and P. M. A. Sloot. Branching and compactification in a model of coral growth: a critical reinvestigation of the effect of hydrodynamics. In: Mathematical modelling & Computing in Biology and Medicine; 5th ESMTB Conference 2002. pp. 539-544.
  Citation Links
• Proceedings
  A. M. M. Artoli, B. D. Kandhai, H. C. J. Hoefsloot, A. G. Hoekstra, and P. M. A. Sloot. Lattice Boltzmann, a robust and accurate solver for interactive computational hemodynamics. In: Computational Science - ICCS 2003. ISBN 3540401946, 9783540401940. 2657, pp. 1034-1043.
  Citation Links
• Article
  A. M. M. Artoli, A. G. Hoekstra, and P. M. A. Sloot. Simulation of a Systolic Cycle in a Realistic Artery with the Lattice Boltzmann BGK Method. International Journal of Modern Physics C 17(1 en 2), pp. 95-98.
  Citation Links
• Proceedings
  A. G. Hoekstra and V. A. Babenko. Accuracy of internal fields inside spheroids in DDA-simulations of light scattering. In: Electromagnetic and Light Scattering Theory and Applications VII. ISBN 3887225791, 9783887225797. pp. 123-126.
  Citation Links
• Article
  R. Merks, A. Hoekstra, J. Kaandorp, and P. Sloot. Models of coral growth: spontaneous branching, compactification and the Laplacian growth assumption. Journal of Theoretical Biology 224(2), pp. 153-166.
  Abstract Citation Links
• Article
  R. M. H. Merks, A. G. Hoekstra, J. A. Kaandorp, and P. M. A. Sloot. Diffusion-limited Aggregation in Laminar Flows. International Journal of Modern Physics C 14(9), pp. 1171-1182.
  Abstract Citation Links

2002

• Proceedings
  R. M. H. Merks, A. G. Hoekstra, J. A. Kaandorp, and P. M. A. Sloot. Branching and compactification in a model of coral growth: a critical reinvestigation of the effect of hydrodynamics. In: ECMTB2002: 5th Conference of the European Society of the Mathematical and Theoretical Biology, book of abstracts.
  Citation Links
• Proceedings
  R. M. H. Merks, A. G. Hoekstra, J. A. Kaandorp, and P. M. A. Sloot. Spontaneous branching in a polyp oriented model of stony coral growth. In: Computational Science- ICCS 2002, Proceedings Part I. 2329, pp. 88-96.
  Citation Links
• Proceedings
  P. M. A. Sloot, C. J. K. Tan, J. J. Dongarra, and A. G. Hoekstra. Computational Science - ICCS 2002, Proceedings Part III. In: Lecture Notes in Computer Science. 2331.
  Citation Links
• Proceedings
  A. M. M. Artoli, A. G. Hoekstra, and P. M. A. Sloot. Accuracy of 2D pulsatile flow in the lattice Boltzmann BGK method. In: LNCS; Computational Science - ICCS 2002, Proceedings Part I. 2329, pp. 361-370.
  Citation Links
• Article
  A. M. M. Artoli, A. G. Hoekstra, and P. M. A. Sloot. 3D Pulsatile flow with the Lattice Boltzmann BGK Method. International Journal of Modern Physics C 13(8), pp. 1119-1134.
  Citation Links
• Article
  B. D. Kandhai, D. Hlushkou, A. G. Hoekstra, P. M. A. Sloot, H. van As, and U. Tallarek. Influence of Stagnant Zones on Transient and Asymptotic Dispersion in Macroscopically Homogeneous Porous Media. Physical Review Letters 88(23), pp. 1-4.
  Citation Links
• Article
  R. M. H. Merks, A. G. Hoekstra, and P. M. A. Sloot. The moment propagation method for advection-diffusion in the lattice Boltzmann method: validation and Péclet number limits. Journal of computational Physics 183, pp. 563-576.
  Abstract Citation Links
• Book
  P. M. A. Sloot, C. J. K. Tan, J. J. Dongarra, and A. G. Hoekstra. Computational Science - ICCS 2002. ISBN 9783540460435. 1.
  Citation Links
• Proceedings
  P. M. A. Sloot, C. J. K. Tan, J. J. Dongarra, and A. G. Hoekstra. Computational Science - ICCS 2002, Proceedings Part II. In: Lecture Notes in Computer Science. 2330.
  Citation Links
• Article
  B. D. Kandhai, U. Tallarek, D. Hlushkou, A. Hoekstra, P. M. A. Sloot, and H. Van As. Numerical simulation and measurement of liquid hold-up in biporous media containing discrete stagnant zones. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 360(1792), pp. 521-534.
  Abstract Citation Links

2001

• Proceedings
  A. M. M. Artoli, B. D. Kandhai, H. G. Hoefsloot, A. G. Hoekstra, and P. M. A. Sloot. Shear Stress in Lattice Boltzmann Simulations. In: Europhysics Conference on Computational Physics in series Publication Series of the John von Neumann Institute for computing. 8, p. A127.
  Citation Links
• Chapter
  P. M. A. Sloot, J. A. Kaandorp, A. G. Hoekstra, and B. J. Overeinder. Distributed Cellular Automata: Large Scale Simulation of Natural Phenomena. In: Solutions to Parallel and Distributed Computing Problems: Lessons from Biological Sciences. pp. 1-46.
  Citation Links
• Proceedings
  P. M. A. Sloot and A. G. Hoekstra. Cellular Automata as a Mesoscopic Approach to Model and simulate Complex Systems. In: Proceedings of the 2001 International Conference on Computational Science ICCS 2001, in series LNCS volume 2074 (II). ISBN 3540422331, 9783540422334. LNCS 2074, pp. 518-527.
  Citation Links
• Article
  B. D. Kandhai, A. Koponen, A. G. Hoekstra, and P. M. A. Sloot. Iterative momentum relaxation for fast lattice-Boltzmann Simulations. Future Generation Computer Systems 18(1), pp. 89-96.
  Citation Links
• Article
  A. G. Hoekstra and P. M. A. Sloot. Wall effects on density fluctuations in the GBL thermal lattice gas automaton. Computer Physics Communications 142(1-3), pp. 151-154.
  Citation Links
• Book
  L. O. Hertzberger, A. G. Hoekstra, and R. D. Williams. Proceedings High-Performance Computing and Networking (HPCN Europe 2001). ISBN 3540422935, 9783540422938.
  Citation Links
• Proceedings
  A. M. M. Artoli, A. G. Hoekstra, and P. M. A. Sloot. Time dependent flow in a rigid tube using the Lattice Boltzmann Method. In: International Conference on Discrete Simulation of Fluid Dynamics in series Europhysics Conference Abstracts. 25H, p. 3.
  Citation Links
• Proceedings
  R. M. H. Merks, A. G. Hoekstra, and P. M. A. Sloot. Validation of the Lowe-Frenkel tracer dispersion method in the lattice Boltzmann method. In: Europhysics Conference on Computational Physics, in series Publication series of the John von Neumann Institute for Computing. 8, p. A140.
  Citation Links
• Proceedings
  R. M. H. Merks, A. G. Hoekstra, and P. M. A. Sloot. Validation of the Lowe-Frenkel tracer dispersion method in the lattice Botzmann method. In: Proceedings of the 7th annual conference of the Advanced School for Computing and Imaging. ISBN 9080308668, 9789080308664. pp. 137-141.
  Citation Links
• Article
  A. G. Hoekstra, M. O. Frijlink, L. B. F. M. Waters, and P. M. A. Sloot. Radiation forces in the discrete-dipole approximation. Journal of the Optical Society of America. A, Optics, Image Science and Vision 18(8), pp. 1944-1953.
  Citation Links

2000

• Article
  H. E. Bal, R. A. F. Bhoedjang, R. F. H. Hofman, C. J. H. Jacobs, T. Kielmann, J. Maassen, R. van Nieuwpoort, J. Romein, L. Renambot, T. Rühl, R. Veldema, K. Verstoep, A. Baggio, G. Ballintijn, I. Kuz, G. Pierre, M. R. van Steen, A. S. Tanenbaum, G. Doornbos, D. Germans, H. J. W. Spoelder, E.-J. Baerends, S. van Gisbergen, H. Afsarmanesh, G. D. van Albada, A. S. Z. Belloum, D. Dubbeldam, Z. W. Hendrikse, L. O. Hertzberger, A. G. Hoekstra, K. A. Iskra, B. D. Kandhai, D. C. Koelma, F. van der Linden, B. J. Overeinder, P. M. A. Sloot, P. F. Spinnato, D. H. J. Epema, A. van Gemund, P. P. Jonker, A. Radulescu, C. van Reeuwijk, H. J. Sips, P. M. W. Knijnenburg, M. Lew, F. Sluiter, L. Wolters, H. Blom, and A. J. van der Steen. The Distributed ASCI supercomputer project. Operating Systems Review 34(4), pp. 76-96.
  Abstract Citation Links
• Chapter
  P. M. A. Sloot, J. A. Kaandorp, A. G. Hoekstra, and B. J. Overeinder. Distributed Cellular Automata: Large Scale Simulation of Natural Phenomena. In: Bio-inspired Computation.
  Citation Links
• Proceedings
  A. G. Hoekstra, M. O. Frijlink, and P. M. A. Sloot. Calculation of the radiation forces on each dipole in the discrete dipole approximation. In: Light Scattering by Nonspherical Particles: Halifax Contributions. ISBN 0970231601, 9780970231604. pp. 237-240.
  Citation Links
• Article
  D. Dubbeldam, A. G. Hoekstra, and P. M. A. Sloot. Dynamic Structure Factor in Single and Two-Species Thermal GBL Lattice Gas. Computer Physics Communications 129, pp. 13-20.
  Citation Links
• Chapter
  A. G. Hoekstra and P. M. A. Sloot. Biophysical and Biomedical Applications of Non-Spherical Scattering. In: Light Scattering by Nonspherical Particles, Theory Measurements and Applications. ISBN 0124986609, 9780124986602. pp. 585-602.
  Citation Links
• Chapter
  A. G. Hoekstra and P. M. A. Sloot. Distributed Particle Simulation of Flow in Complex Geometries. In: High Performance Computing in Engineering VI. pp. 371-380.
  Citation Links
• Article
  B. D. Kandhai, W. Soll, S. Chen, A. G. Hoekstra, and P. M. A. Sloot. Finite-Difference Lattice-BGK Methods on Nested Grids. Computer Physics Communications 129, pp. 100-109.
  Citation Links

1999

• Proceedings
  D. Dubbeldam, A. G. Hoekstra, and P. M. A. Sloot. Computational Aspects of Multi-Species Lattice-Gas Automata. In: High-Performance Computing and Networking (HPCN Europe '99), Amsterdam, The Netherlands. ISBN 978-3-540-65821-4. Lecture Notes in Computer Science pp. 339-349.
  Citation Links
• Proceedings
  P. M. A. Sloot, J. A. Kaandorp, A. G. Hoekstra, and B. J. Overeinder. Distributed Simulation with Cellular Automata: Architecture and Applications. In: SOFSEM'99 Theory and Practice of Informatics, Proceedings of 26th Seminar on Current Trends, in Theory and Practice of Informatics, Milovy, Czech Republic, November 27 - December 4. ISBN 978-3-540-66694-3. Lecture Notes on Computer Science pp. 203-249.
  Citation Links
• Article
  P. M. A. Sloot, J. A. Kaandorp, A. G. Hoekstra, and B. J. Overeinder. Distributed simulation with cellular automata: Architecture and applications. Lecture Notes in Computer Science 1725, pp. 203-249.
  Citation Links
• Article
  B. D. Kandhai, A. Koponen, A. G. Hoekstra, M. Kataja, J. Timonen, and P. M. A. Sloot. Implementation aspects of 3d lattice-bgk: Boundaries, accuracy and a new fast relaxation method. Journal of comparative physiology 150, pp. 482-501.
  Citation Links
• Proceedings
  B. D. Kandhai, A. Koponen, A. G. Hoekstra, and P. M. A. Sloot. Iterative momentum relaxation for fast lattice-boltzmann simulations. In: Proceedings of the fifth annual conference of the Advanced School for Computing and Imaging ASCI, June 15-17, 1999. pp. 274-278.
  Citation Links
• Article
  B. D. Kandhai, A. Koponen, A. G. Hoekstra, and P. M. A. Sloot. Iterative momentum relaxation for fast lattice-boltzmann simulations. Lecture Notes in Computer Science 1593, pp. 311-318.
  Citation Links
• Article
  D. Dubbeldam, A. G. Hoekstra, and P. M. A. Sloot. Computational aspects of multispecies lattice-gas automata. Lecture Notes in Computer Science 1593, pp. 339-349.
  Citation Links
• Book
  P. M. A. Sloot, M. T. Bubak, A. G. Hoekstra, and L. O. Hertzberger. Proceedings High-Performance Computing and Networking (HPCN Europe '99), Amsterdam, the Netherlands. ISBN 3540658211, 9783540658214.
  Citation Links
• Article
  D. Kandhai, D. J.-E. Vidal, A. G. Hoekstra, H. Hoefsloot, P. Iedema, and P. M. A. Sloot. Lattice-Boltzmann and finite element simulations of fluid flow in a SMRX static mixer reactor. International Journal for Numerical Methods in Fluids 31(6), pp. 1019-1033.
  Abstract Citation Links
• Proceedings
  A. G. Hoekstra, M. O. Frijlink, D. de Kanter, and P. M. A. Sloot. Two new applications of large scale dda simulations. In: Proceedings of the 4th Conference on Electromagnetic and light Scattering by Nonspherical Particles:Theory and Applications. pp. 333-334.
  Citation Links
• Proceedings
  D. Dubbeldam, A. G. Hoekstra, and P. M. A. Sloot. Computational aspects of multispecies lattice-gas automata. In: Proceedings of the fifth annual conference of the Advanced School for Computing and Imaging ASCI, June 15-17, 1999. June 1999, pp. 267-273.
  Citation Links

1998

• Article
  A. G. Hoekstra and A. Bode. Guest Editorial, High Performance Computing and Networking Europe 1997. Future Generation Computer Systems 13(4--5), pp. 247-249.
  Citation Links
• Other: misc
  A. G. Hoekstra and A. Bode. Special Issue on High Performance Computing and Networking Europe 1997. Future Generation Computer Systems 13(4--5), pp. 247-400.
  Citation
• Proceedings
  B. D. Kandhai, D. Dubbeldam, A. G. Hoekstra, and P. M. A. Sloot. Lattice Boltzmann hydrodynamics in Centrifugal Elutriation Chambers. In: Proceedings of the fourth annual conference of the Advanced School for Computing and Imaging. pp. 269-274.
  Citation
• Article
  A. G. Hoekstra, J. Rahola, and P. M. A. Sloot. Accuracy of Internal Fields in Volume Integral Equation Simulations of Light Scattering. Applied Optics 37, pp. 8482-8497.
  Citation Links
• Article
  B. D. Kandhai, A. Koponen, A. G. Hoekstra, M. Kataja, J. Timonen, and P. M. A. Sloot. Lattice Boltzmann Hydrodynamics on Parallel Systems. Computer Physics Communications 111, pp. 14-26.
  Citation Links
• Article
  A. G. Hoekstra and A. Bode. Guest editorial, high performance computing and networking Europe 1997. Future Generation Computer Systems 4-5(13), pp. 247-249.
  Citation Links
• Article
  A. G. Hoekstra, M. D. Grimminck, and P. M. A. Sloot. Large scale simulations of elastic light scattering by a fast dipole approximation. International Journal of Modern Physics C pp. 87-102.
  Citation Links
• Report
  J. M. Braan, A. G. Hoekstra, and P. M. A. Sloot. Prototyping an HPCNet Distance Learning Environment: Rationale and Implementation.
  Citation Links
• Chapter
  M. A. Kartawidjaja and A. G. Hoekstra. Memory efficiency of parallel programs and memory bounded speedup. In: High-performance computign and networking (HPCN Europe '98). ISBN 3540644431, 9783540644439. pp. 766-775.
  Citation Links
• Article
  L. Dorst, A. Hoekstra, J. M. van den Akker, J. Breeman, F. C. A. Groen, J. Lagerberg, A. Visser, H. Yakali, and L. O. Hertzberger. Evaluation automatic debiting systems by modelling and simulation of virtual sensors. IEEE Transactions on Instrumentation and Measurement 1(2), pp. 18-25.
  Citation Links
• Article
  B. D. Kandhai, D. Vidal, A. G. Hoekstra, H. C. J. Hoefsloot, P. Iedema, and P. M. A. Sloot. A comparison between lattice-boltzmann and finite element simulations of fluid flow in static mixer reactors. International Journal of Modern Physics C 9(8), pp. 1123-1128.
  Citation Links
• Article
  A. G. Hoekstra, M. D. Grimminck, and P. M. A. Sloot. Large scale simulations of elastic light scattering by a fast discrete dipole approximation. International Journal of Modern Physics C 9(1), pp. 87-102.
  Abstract Citation Links
• Proceedings
  D. Kandhai, D. Dubbeldam, A. G. Hoekstra, and P. M. A. Sloot. Parallel lattice-Boltzmann simulation of fluid flow in centrifugal elutration chambers. In: High-Performance Computing and Networking. ISBN 9783540697831. pp. 173-182.
  Abstract Citation Links
• Proceedings
  A. Hoekstra, J. Rahola, and P. Sloot. Internal fields in volume integral equation simulations of light scattering: accuracy and resonances. In: Proceedings of conference on light scattering by nonspherical particles. pp. 16-19.
  Citation Links
• Proceedings
  B. D. Kandhai, D. Dubbeldam, A. G. Hoekstra, and P. M. A. Sloot. Lattice boltzmann hydrodynamics in centrifugal elutriation chambers. In: ASCI'98 : proceedings of the fourth annual conference of the Advanced School for Computing and Imaging. ISBN 9080308633, 9789080308633. pp. 269-274.
  Citation Links
• Proceedings
  A. Hoekstra and P. Sloot. A parallel fast discrete dipole approximation for large scale simulations of elastic light scattering. In: ASCI'98 : proceedings of the fourth annual conference of the Advanced School for Computing and Imaging. ISBN 9080308633, 9789080308633. pp. 73-79.
  Citation Links

1997

• Proceedings
  A. G. Hoekstra, L. Dorst, M. Bergman, J. M. Lagerberg, A. Visser, H. H. Yakali, F. C. A. Groen, and L. O. Hertzberger. High Performance Discrete Event Simulations to evaluate Complex Industrial Systems, The case of Automatic Debiting Systems for Electronic Toll Collection on Motor Highways. In: High Performance Computing and Networking. Lecture Notes in Computer Science 1225, pp. 41-50.
  Citation Links
• Report
  A. G. Hoekstra, W. Hoffmann, M. A. Kartawidjaja, B. J. Overeinder, J. Santoso, and P. M. A. Sloot. A High Performance Simulation Environment, project status report. .
  Citation
• Chapter
  B. D. Kandhai, A. Koponen, A. G. Hoekstra, M. Kataja, J. Timonen, and P. M. A. Sloot. Performance of a parallel 3d lattice boltzmann code for simulating fluid flow. In: International Workshop on Physics of Structurally Disordered Materials.
  Citation Links
• Chapter
  A. G. Hoekstra, G. R. Meijer, and L. O. Hertzberger. A generic simulation environment to evaluate and design automatic debitting systems. In: Proceeding Intelligent Transport Systems 1997.
  Citation Links
• Chapter
  A. Koponen, M. Kataja, J. Timonen, B. D. Kandhai, A. G. Hoekstra, and P. M. A. Sloot. Fluid flow in three-dimensional random fibre webs. In: CSC News, High Performance Computing and Networking in Finland. pp. 12-14.
  Citation Links
• Chapter
  A. G. Hoekstra and P. M. A. Sloot. Elastic light scattering from single biological cells. In: Progress in Electromagnetics Research Symposium 1997. p. 583.
  Citation Links
• Chapter
  A. G. Hoekstra, P. J. H. Brinkhorst, and P. M. A. Sloot. First results of dda simulations of elastic light scattering by red blood cells. In: Proceedings Workshop on Light Scattering by Non-Spherical Particles (SCANOP). pp. 39-40.
  Citation Links
• Article
  A. Koponen, B. D. Kandhai, E. Hellen, M. Alava, A. G. Hoekstra, M. Kataja, K. Niskanen, P. M. A. Sloot, and J. Timonen. Permeability of three-dimensional random fibre webs. Physical Review Letters .
  Citation Links
• Chapter
  L. Dorst, F. C. A. Groen, J. M. van den Akker, J. Breeman, A. G. Hoekstra, J. M. Lagerberg, A. Visser, H. Yakali, and L. O. Hertzberger. The virtual sensor concept applied to simulation: the evaluation of automatic debiting system. In: Proceedings 1997 Workshop on Emergent Technologies and Virtual Systems for Instrumentation and Measurements. pp. 118-124.
  Citation Links
• Article
  A. G. Hoekstra, L. Dorst, M. Bergman, J. Lagerberg, A. Visser, H. Yakali, F. Groen, and L. O. Hertzberger. High performance discrete event simulations to evaluate complex industrial systems, the case of automatic. Lecture Notes in Computer Science 1225, pp. 41-50.
  Abstract Citation Links
• Chapter
  B. J. Overeinder and A. G. Hoekstra. Performance measurements of a light scattering code on the Parsytec CC: Comparison with the Parsytec PowerXplorer. In: Proceedings of the third annual conference of the Advanced School for Computing and Imaging. pp. 116-119.
  Citation Links
• Proceedings
  A. G. Hoekstra, L. Dorst, M. Bergman, J. Lagerberg, A. Visser, H. Yakali, F. Groen, and L. O. Hertzberger. Modelling and simulation of automatic debiting systems for electronic toll collection on motor highways. In: Applied Modelling and Simulation. ISBN 0889862303, 9780889862302. pp. 104-108.
  Citation Links
• Proceedings
  A. G. Hoekstra, J. M. Lagerberg, and L. O. Hertzberger. Modelling and Simulation of an Automatic Debiting System. In: CERN School of Computing. pp. 233-240.
  Citation Links

1996

• Chapter
  A. G. Hoekstra and P. M. A. Sloot. The Discrete Dipole Approximation - Possibilities and Problems to Simulate Elastic Light Scattering. In: Proceedings of the 1st Workshop on Electromagnetic and Light Scattering, Theory and Applications. pp. 7-18.
  Citation Links
• Chapter
  A. G. Hoekstra and P. M. A. Sloot. Parallel Hierarchical Methods for Large Scale Simulations of Virtual Particle Models. In: ASCI 1996, Proceedings of the second annual conference of the Advanced School for Computing and Imaging. pp. 49-53.
  Citation Links
• Chapter
  A. G. Hoekstra, M. D. Grimminck, and P. M. A. Sloot. Simulating Light Scattering from micron-sized particles: A parallel Fast Discrete Dipole Approximation. In: Proceedings High Performance Computing and Networking Europe 1996. pp. 269-275.
  Citation Links
• Article
  R. M. P. Doornbos, M. Schaeffer, A. G. Hoekstra, P. M. A. Sloot, B. G. de Grooth, and J. Greve. Elastic Light Scattering Measurements of Single Biological Cells in an Optical Trap. Applied Optics 34, pp. 729-734.
  Citation Links
• Article
  A. G. Hoekstra, P. M. A. Sloot, F. van der Linden, M. van Muiswinkel, J. J. J. Vesseur, and L. O. Hertzberger. Native and Generic Parallel Programming Environments on a Transputer and a PowerPC Platform. Concurrency 8, pp. 19-46.
  Citation Links
• Article
  A. G. Hoekstra, L. O. Hertzberger, and P. M. A. Sloot. The Optical `Fingerprints' of Cells: Catching the Bad Guys. IEEE Computational Science and Engineering Spring, pp. 4-5.
  Citation Links

1995

• Chapter
  A. G. Hoekstra, P. M. A. Sloot, and L. O. Hertzberger. Comparing the Parix and PVM parallel programming environments. In: ASCI '95: Proceedings of the first annual conference of the Advanced School for Computing and Imaging. pp. 288-292.
  Citation Links
• Chapter
  A. G. Hoekstra and P. M. A. Sloot. Simulating Elastic Light Scattering. In: PowerXplorer User Report, 1st edition. pp. 65-69.
  Citation Links
• Chapter
  A. G. Hoekstra, P. M. A. Sloot, and L. O. Hertzberger. Comparing the Parix and PVM parallel programming environments. In: Proceedings of the Workshop on Parallel Programming and Computation (ZEUS '95) and the 4th Nordic Transputer Conference (NTUG '95). pp. 13-17.
  Citation Links
• Chapter
  A. G. Hoekstra and P. M. A. Sloot. Development of Parallel Hierarchical Methods. In: PowerXplorer User Report, 1st edition. pp. 70-76.
  Citation Links
• Article
  A. G. Hoekstra and P. M. A. Sloot. Coupled Dipole Simulations of Elastic Light Scattering on Parallel Systems. International Journal of Modern Physics C 6, pp. 663-679.
  Citation Links
• Proceedings
  A. G. Hoekstra, P. M. A. Sloot, and L. O. Hertzberger. Comparing the Parix and PVM parallel programming enviroments. In: Transputer and Occam Engineering Series, Parallel Programming and Applications, Workshop Proceedings. pp. 13-17.
  Citation Links

1994

• Chapter
  P. M. A. Sloot, A. G. Hoekstra, and L. O. Hertzberger. A Comparison of the Iserver-Occam, Parix, Express, and PVM Programming Environments on a Parsytec GCel. In: High Performance Computing and Networking, Volume II Networking and Tools. pp. 253-259.
  Citation Links
• Article
  G. J. Streekstra, A. G. Hoekstra, and R. M. Heethaar. Anomalous Diffraction by arbitrarily oriented Ellipsoids: Applications in Ektacytometry. Applied Optics 33, pp. 7288-7296.
  Citation Links
• Article
  A. G. Hoekstra and P. M. A. Sloot. New Computational Techniques to Simulate Light Scattering from Arbitrary Particles. Particle & Particle Systems Characterization 11, pp. 189-193.
  Citation Links
• PhD Thesis
  A. G. Hoekstra. Computer Simulations of Elastic Light Scattering. Supervised by L. O. Hertzberger and P. M. A. Sloot.
  Citation Links
• Article
  R. M. P. Doornbos, A. G. Hoekstra, K. E. I. Deurloo, B. G. de Grooth, P. M. A. Sloot, and J. Greve. Lissajous-Like Patterns in Scatter Plots of Calibration Beads. Cytometry 16, pp. 236-242.
  Citation Links
• Article
  A. G. Hoekstra, R. M. P. Doornbos, K. E. I. Deurloo, Herke Jan Noordmans, B. G. de Grooth, and P. M. A. Sloot. Another face of Lorenz-Mie scattering. Applied Optics 33(3), pp. 494-500.
  Abstract Citation Links

1993

• Article
  A. G. Hoekstra and P. M. A. Sloot. Dipolar Unit Size in Coupled Dipole Calculations of the Scattering Matrix Elements Elements. Optics Letters 18, pp. 1211-1213.
  Citation Links
• Proceedings
  A. G. Hoekstra and P. M. A. Sloot. New computational techniques to simulate Light Scattering from arbitrary particles. In: The 3rd International Congress on Optical Particle Sizing '93. pp. 167-172.
  Citation Links
• Article
  G. J. Streekstra, A. G. Hoekstra, E.-J. Nijhof, and R. M. Heethaar. The interpretation of light scattering by ellipsoidal red blood cells in ektacytometry: Fraunhofer versus anomalous diffraction. Applied Optics 32, pp. 2266-2272.
  Citation Links
• Proceedings
  A. G. Hoekstra, R. M. P. Doornbos, K. E. I. Deurloo, H. J. Noordmans, B. G. de Grooth, and P. M. A. Sloot. An unexpected signature of Lorenz-Mie scattering observed in FlowCytometric experiments. In: The 3rd International Congress on Optical Particle Sizing '93. pp. 153-158.
  Citation Links
• Proceedings
  G. J. Streekstra, A. G. Hoekstra, and R. M. Heethaar. Anomalous diffraction as a tools for the characterization of ellipsoidal red blood cells in Ektacytometry. In: Proceedings of the 3rd International Congress on Optical Particle Sizing. pp. 37-42.
  Citation Links
• Article
  P. M. A. Sloot and A. G. Hoekstra. Light Scattering simulations on a massively parallel computer at the IC3A. Transputer Applications 1, pp. 42-49.
  Citation Links
• Proceedings
  A. G. Hoekstra and P. M. A. Sloot. Implementation of a Parallel Conjugate Gradient Method for Simulation of Elastic Light. In: The 4th international conference Physics Computing '92. pp. 345-346.
  Citation Links
• Article
  R. M. P. Doornbos, A. G. Hoekstra, K. E. I. Deurloo, B. G. de Grooth, P. M. A. Sloot, and J. Greve. Polarization measurements in a Flow Cytometer; Lissajous Pattererns in scatter plots of calibrations beads. Cytometry Supplement.
  Citation Links
• Proceedings
  A. G. Hoekstra and P. M. A. Sloot. Simulating Elastic Light Scattering using High Performance Computing methods. In: European Simulation Symposium 1993. pp. 462-467.
  Citation Links

1992

• Report
  P. M. A. Sloot, A. G. Hoekstra, W. Hoffmann, and L. O. Hertzberger. Time Complexity of a Parallel Conjugate Gradient Solver for Light Scattering Simulations: Theory and SPMD Implementation. .
  Citation Links
• Article
  P. M. A. Sloot and A. G. Hoekstra. Implementation of a parallel conjugate gradient method for simulation of elastic light scattering. Computers in Physics 6, pp. 323-323.
  Citation Links

1991

• Article
  A. G. Hoekstra, L. O. Hertzberger, and P. M. A. Sloot. Simulation of Elastic Light Scattering on distributed memory machines. Bulletin of the American Physical Society 36, pp. 1798-1798.
  Citation Links
• Proceedings
  A. G. Hoekstra, P. M. A. Sloot, M. J. Haan, and L. O. Hertzberger. Time complexity analysis for distributed memory computers: Implementation of a parallel Conjugate Gradient method. In: Computing Science in the Netherlands. pp. 249-266.
  Citation Links
• Article
  G. J. Streekstra, A. G. Hoekstra, E.-J. Nijhof, and R. M. Heethaar. The interpretation of the light scattering by ellipsoidal red blood cells in ektacytometry: Fraunhofer versus Anomalous Diffraction. Medical & Biological Engineering & Computing 29, p. 849.
  Citation Links
• Article
  A. G. Hoekstra, J. Aten, and P. M. A. Sloot. The effect of aniosmotic media on the volume of the T-lymphocyte nucleus. Biophysical Journal 59, pp. 765-774.
  Citation Links

1990

• Proceedings
  P. M. A. Sloot and A. G. Hoekstra. Arbitrarily-shaped particles measured in Flow-through systems. In: The 2nd internaltional congress on particle sizing. pp. 605-611.
  Citation Links
• Proceedings
  P. M. A. Sloot and A. G. Hoekstra. Morphological characteristics of nucleated bloodcells studied by elastic light scattering. In: The 2nd international congress on particle sizing. pp. 382-394.
  Citation Links

1989

• Proceedings
  P. M. A. Sloot, M. J. Carels, and A. G. Hoekstra. CACE: a case of Embedded System Development. In: Computing Science in the Netherlands. pp. 441-462.
  Citation Links
• Article
  P. M. A. Sloot, A. G. Hoekstra, H. van de Liet, and C. G. Figdor. Scatter matrix elements of biological particles measured in a flow-through system: Theory and practice. Applied Optics 28, pp. 1752-1762.
  Citation Links
• Article
  P. M. A. Sloot, H. van der Liet, A. G. Hoekstra, and C. G. Figdor. Scattering matrix elements of biological particles measured in a flow through system: theory and practice. Applied Optics 28(10), pp. 1752-1762.
  Abstract Citation Links

1988

• Article
  J. M. M. de Nijs, A. H. M. Holtslag, A. G. Hoekstra, and A. van Silfhout. Calibration method for rotating-analyzer ellipsometers. Journal of the Optical Society of America. A, Optics and Image Science 5, pp. 1466-1471.
  Citation Links
• Article
  P. M. A. Sloot, A. G. Hoekstra, and C. G. Figdor. Osmotic response of lymphocytes measured by means of forward lightscattering: theoretical considerations. Cytometry 9(6), pp. 636-641.
  Abstract Citation Links