Publications of the CSL group

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2000

Chapter

A. G. Hoekstra and P. M. A. Sloot. Distributed Particle Simulation of Flow in Complex Geometries. In: High Performance Computing in Engineering VI. pp. 371-380.

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PhD Thesis

B. J. Overeinder. Distributed Event-driven Simulation- Scheduling Strategies and Resource Management. ISBN 9057760584, 9789057760587. Supervised by P. M. A. Sloot and M. Livny.

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Chapter

P. M. A. Sloot, J. A. Kaandorp, A. G. Hoekstra, and B. J. Overeinder. Distributed Cellular Automata: Large Scale Simulation of Natural Phenomena. In: Bio-inspired Computation.

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Proceedings

R. G. Belleman, Z. Zhao, G. D. van Albada, and P. M. A. Sloot. Design considerations for the construction of immersive dynamic exploration environments. In: ASCI 2000, Proceedings of the sixth annual conference of the Advanced School for Computing and Imaging. ISBN 908030865X, 9789080308657. pp. 195-201.

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Proceedings

E. V. Zudilova-Seinstra and D. P. Shamonin. Creating DEMO Presentations on the base of Visualization Model. In: Proceedings of the HPCN2000 Conference, Amsterdam, May 2000. 1823, pp. 460-467.

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Proceedings

S. F. Portegies Zwart. Collisions in Compact Star Clusters.. In: ASP Conf. Ser. 211: Massive Stellar Clusters. p. 181.

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Proceedings

A. G. Hoekstra, M. O. Frijlink, and P. M. A. Sloot. Calculation of the radiation forces on each dipole in the discrete dipole approximation. In: Light Scattering by Nonspherical Particles: Halifax Contributions. ISBN 0970231601, 9780970231604. pp. 237-240.

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Chapter

A. G. Hoekstra and P. M. A. Sloot. Biophysical and Biomedical Applications of Non-Spherical Scattering. In: Light Scattering by Nonspherical Particles, Theory Measurements and Applications. ISBN 0124986609, 9780124986602. pp. 585-602.

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Article

E. D. Havik, W. Hoffmann, and P. W. Hemker. Application of the over-set grid technique to a model singular perturbation problem. Computing 65(4), pp. 339-356.

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Report

M. O. Freijlink. Application of the Discrete Dipole Approximation to Radiation Pressure Calculations on Dust-Aggregates: An Exploration.

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Proceedings

J. S. Gallagher III, E. K. Grebel, P. Kroupa, D. McLaughlin, H. Zinnecker, and S. F. Portegies Zwart. A few General Remarks from the Final Discussion of the Workshop on Massive Stellar Clusters. In: ASP Conf. Ser. 211: Massive Stellar Clusters. p. 310.

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Article

A. Schoneveld, P. M. A. Sloot, M. Lees, and E. Karyadi. A Framework for Dynamic Load Balancing: A Case Study on Explosive Containment Simulation. Parallel Computing 26, pp. 737-751.

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Proceedings

A. V. Bogdanov, E. V. Zudilova-Seinstra, M. A. Zatevakhin, and D. P. Shamonin. 3D Visualisation of Convective Cloud Simulation. In: Proc. of 9th. International symposium on flow visualization, Edinburg. pp. 118-124.

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1999

Proceedings

E. V. Zudilova-Seinstra. Using Animation for Presenting the Results of Numerical Simulation. In: Proc. of International Conference of Information Systems Analysis and Synthesis) / Conference of the Systemics, Cybernetics and Informatics. pp. 643-647.

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Proceedings

A. G. Hoekstra, M. O. Frijlink, D. de Kanter, and P. M. A. Sloot. Two new applications of large scale dda simulations. In: Proceedings of the 4th Conference on Electromagnetic and light Scattering by Nonspherical Particles:Theory and Applications. pp. 333-334.

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Proceedings

P. M. A. Sloot and B. J. Overeinder. Time warped automata: Parallel discrete event simulation of asynchronous ca's. In: Proceedings of the Third International Conference on Parallel Processing and Applied Mathematics, Kazimierz Dolny, Poland, 14-17 september 1999. ISBN 8391199401, 9788391199404. pp. 43-62.

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Other: misc

J. A. Kaandorp. Thematic issue on Virtual Reality in Industry and Research. Future Generation Computer Systems 14, pp. 467-536.

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Article

S. F. Portegies Zwart and L. R. Yungelson. The possible companions of young radio pulsars. Monthly Notices of the Royal Astronomical Society 309, pp. 26-30.

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Article

S. F. Portegies Zwart and E. P. J. van den Heuvel. The origin of single radio pulsars. New Astronomy 4, pp. 355-363.

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Proceedings

R. M. H. Merks, J. A. Kaandorp, and P. M. A. Sloot. The interplay of hydrodynamics and genetic regulation in the morphogenesis of sponges and stony corals: pilot studies. In: Theory and Mathematics in Biology and Medicine: Abstracts. p. 345.

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Article

S. F. Portegies Zwart, J. Makino, S. L. W. McMillan, and P. Hut. Star cluster ecology. III. Runaway collisions in young compact star clusters. Astronomy & Astrophysics 348, pp. 117-126.

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Other: misc

D. Talia and P. M. A. Sloot. Special Issue on Cellular Automata. Future Generation Computer Systems 16(2--3), pp. 157-310.

Citation
Chapter

P. M. A. Sloot. Simulation and Visualisation in Medical Diagnosis: Perspectives and Computational Requirements. In: Advanced Infrastructures for Future Healthcare.

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Proceedings

M. Rosner and A. Tirado-Ramos. Security Functions of the MIRACLE System: A Case in Security for Enterprise CPR. In: 3rd Conference and Workshop on Distributed Object Computing Security (DOCsec).

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Proceedings

R. Martinez, J. F. Cook, and A. Tirado-Ramos. Seamless handling of DICOM-related medical information through object-oriented distributed services. In: SPIE Medical Imaging '99.

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Book

M. Boasson, J. A. Kaandorp, J. F. M. Tonino, and M. G. Vosselman. Proceedings of the fifth annual conference of the Advanced School for Computing and Imaging ASCI.

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Book

P. M. A. Sloot, M. T. Bubak, A. G. Hoekstra, and L. O. Hertzberger. Proceedings High-Performance Computing and Networking (HPCN Europe '99), Amsterdam, the Netherlands. ISBN 3540658211, 9783540658214.

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Proceedings

P. F. Spinnato, G. D. van Albada, and P. M. A. Sloot. Performance modelling of hybrid parallel systems. In: Proceedings of the TUG99 Meeting, Barcelona, Spain, Sept. 1999.

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PhD Thesis

A. Schoneveld. Parallel complex systems simulation. ISBN 9057760363, 9789057760365. Supervised by P. M. A. Sloot.

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Article

A. Schoneveld and J. F. de Ronde. P-cam: A framework for parallel complex systems simulations. Future Generation Computer Systems 16(2-3 Dec.99), pp. 217-234.

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Article

J. Zhang, R. Blaak, E. Trizac, J. A. Cuesta, and D. Frenkel. Optimal packing of polydisperse hard-sphere fluids. Journal of Chemical Physics 110, pp. 5318-5324.

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Article

M. T. Bubak, W. Funika, K. A. Iskra, and R. Maruszewksi. Ocm-based tools for performance monitoring of message passing applications, Amsterdam, The Netherlands. Lecture Notes in Computer Science 1593, pp. 1270-1273.

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Proceedings

M. T. Bubak, W. Funika, K. A. Iskra, and R. Maruszewski. OCM-Based Tools for Performance Monitoring of Message Passing Applications. In: High-Performance Computing and Networking (HPCN Europe '99), Amsterdam, The Netherlands. ISBN 978-3-540-65821-4. Lecture Notes in Computer Science pp. 1270-1273.

Abstract Citation
Article

J. A. Kaandorp. Morphological analysis of growth forms of branching marine sessile organisms along environmental gradients. Marine Biology 134, pp. 295-306.

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Proceedings

G. D. van Albada, H. van der Graaf, G. Heijboer, J. W. van Holten, W. J. Kasdorp, J. B. van der Laan, L. Lapikas, G. J. L. Nooren, C. W. J. Noteboom, J. E. J. Oberski, H. Z. Peek, A. Schimmel, T. G. B. W. Sluijk, J. Venema, and P. K. A. de Witt Huberts. Measurements of mechanical vibrations in a solid aluminium sphere and bar excited by 0.5gev electrons. In: Proc. 2nd Amaldi conference, Geneva, July 1997. ISBN 9810235658, 9789810235659. p. 402.

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Article

D. Kandhai, D. J.-E. Vidal, A. G. Hoekstra, H. Hoefsloot, P. Iedema, and P. M. A. Sloot. Lattice-Boltzmann and finite element simulations of fluid flow in a SMRX static mixer reactor. International Journal for Numerical Methods in Fluids 31(6), pp. 1019-1033.

Abstract Citation Links
PhD Thesis

B. D. Kandhai. Large Scale Lattice-Boltzmann Simulations: Computational Methods and Applications. Supervised by P. M. A. Sloot and A. G. Hoekstra.

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Proceedings

B. D. Kandhai, A. Koponen, A. G. Hoekstra, and P. M. A. Sloot. Iterative momentum relaxation for fast lattice-boltzmann simulations. In: Proceedings of the fifth annual conference of the Advanced School for Computing and Imaging ASCI, June 15-17, 1999. pp. 274-278.

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Article

B. D. Kandhai, A. Koponen, A. G. Hoekstra, and P. M. A. Sloot. Iterative momentum relaxation for fast lattice-boltzmann simulations. Lecture Notes in Computer Science 1593, pp. 311-318.

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Article

B. D. Kandhai, A. Koponen, A. G. Hoekstra, M. Kataja, J. Timonen, and P. M. A. Sloot. Implementation aspects of 3d lattice-bgk: Boundaries, accuracy and a new fast relaxation method. Journal of comparative physiology 150, pp. 482-501.

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Article

A. Tirado-Ramos and Y. alSafadi. IHE Technical Framework Specification: Modality Worklist Management. JOURNAL NOT IN LIST 1, pp. 56-60.

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Proceedings

P. M. A. Sloot. High performance simulation with cellular automata. In: Proceedings of HiPer'99, Tromso, Norway, june 27-30 1999. ISBN 8290456999, 9788290456998. pp. 169-207.

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Chapter

J. A. Kaandorp and P. M. A. Sloot. Growth and form of sponges and corals in a moving fluid. In: Pattern Formation in biology, vision and dynamics. pp. 24-41.

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Article

R. G. Belleman, J. A. Kaandorp, P. M. A. Sloot, and D. Dijkman. Geoprove: Geometric probes for virtual environments. Lecture Notes in Computer Science 1593, pp. 817-827.

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Proceedings

R. G. Belleman, J. A. Kaandorp, D. Dijkman, and P. M. A. Sloot. Geoprove: Geometric probes for virtual environments. In: Proceedings of the fifth annual conference of the Advanced School for Computing and Imaging ASCI, June 15-17, 1999. June 1999, pp. 38-43.

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Proceedings

R. G. Belleman, J. A. Kaandorp, D. Dijkman, and P. M. A. Sloot. GEOPROVE: Geometric Probes for Virtual Environments. In: High-Performance Computing and Networking (HPCN Europe '99), Amsterdam, The Netherlands. ISBN 978-3-540-65821-4. Lecture Notes in Computer Science pp. 817-827.

Citation
Proceedings

P. M. A. Sloot and B. J. Overeinder. Extensions to time warp parallel simulation for spatially decomposed applications. In: Proceedings of the fifth annual conference of the Advanced School for Computing and Imaging ASCI. june, pp. 118-124.

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Proceedings

B. J. Overeinder and P. M. A. Sloot. Extensions to time warp parallel simulation for spatial decomposed applications. In: Proceedings of the Fourth United Kingdom Simulation Society Conference (UKSim 99). April 1999, p. 73.

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Proceedings

B. J. Overeinder and P. M. A. Sloot. Extensions to Time Warp Parallel Simulation for Spatially Decomposed Applications. In: Proceedings of the fifth annual conference of the Advanced School for Computing and Imaging ASCI, June 15--17, 1999. pp. 118-124.

Citation
Proceedings

B. J. Overeinder and P. M. A. Sloot. Extensions to Time Warp Parallel Simulation for Spatial Decomposed Applications. In: Proceedings of the Fourth United Kingdom Simulation Society Conference (UKSim 99). pp. 67-73.

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Article

S. F. Portegies Zwart, C. H. Lee, and H. K. Lee. Explaining the light curves of gamma-ray bursts with a precessing jet. Astronomy and Astrophysics Supplement Series 138, pp. 503-504.

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Article

S. F. Portegies Zwart and K. Takahashi. Escape from a Crisis in Fokker-Planck Models. Celestial Mechanics & Dynamical Astronomy 73, pp. 179-186.

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Proceedings

M. T. Bubak, W. Funika, K. A. Iskra, and R. Wismüller. Enhancing the Functionality of Performance Measurement Tools for Message Passing Environments. In: Recent Advances in Parallel Virtual Machine and Message Passing Interface, Proceedings of the 6th European PVM/MPI Users' Group Meeting, Barcelona, Spain, September 1999. ISBN 978-3-540-66549-6. Lecture Notes in Computer Science pp. 67-74.

Abstract Citation
Article

M. T. Bubak, W. Funika, K. A. Iskra, and R. Wismüller. Enchancing the functionality of performance measurement tools for message passing environments. Lecture Notes in Computer Science 1697, pp. 67-74.

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Proceedings

G. D. van Albada, J. Clinckemaillie, A. H. L. Emmen, J. Gehring, O. Heinz, F. van der Linden, A. Reinefeld, P. M. A. Sloot, and B. J. Overeinder. Dynamite-blasting obstacles to parallel cluster computing. In: Proceedings of the fifth annual conference of the Advanced School for Computing and Imaging ASCI, june 15-17, 1999. pp. 31-37.

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Article

G. D. van Albada, J. Clinckemaillie, A. H. L. Emmen, J. Gehring, O. Heinz, F. van der Linden, B. J. Overeinder, A. Reinefeld, and P. M. A. Sloot. Dynamite - blasting obstacles to parallel cluster computing. Lecture Notes in Computer Science 1593, pp. 300-310.

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Proceedings

K. Takahashi and S. F. Portegies Zwart. Dynamical Evolution of Tidally Truncated Star Clusters. In: ASP Conf. Ser. 182: Galaxy Dynamics - A Rutgers Symposium. p. 107.

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Proceedings

A. Schoneveld, M. Lees, E. Karyadi, and P. M. A. Sloot. Dynamic load balancing in parallel finite element simulations. In: Proceedings of the fifth annual conference of the Advanced School for Computing and Imaging ASCI. June 1999, pp. 429-434.

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Article

A. Schoneveld, M. Lees, and E. Karyadi. Dynamic load balancing in parallel finite element simulations. Lecture Notes in Computer Science 1593, pp. 409-419.

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Proceedings

A. Schoneveld, M. Lees, E. Karyadi, and P. M. A. Sloot. Dynamic Load Balancing in Parallel Finite Element Simulations. In: High-Performance Computing and Networking (HPCN Europe '99), Amsterdam, The Netherlands. ISBN 978-3-540-65821-4. Lecture Notes in Computer Science pp. 409-419.

Citation
Article

P. M. A. Sloot, J. A. Kaandorp, A. G. Hoekstra, and B. J. Overeinder. Distributed simulation with cellular automata: Architecture and applications. Lecture Notes in Computer Science 1725, pp. 203-249.

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Proceedings

P. M. A. Sloot, J. A. Kaandorp, A. G. Hoekstra, and B. J. Overeinder. Distributed Simulation with Cellular Automata: Architecture and Applications. In: SOFSEM'99 Theory and Practice of Informatics, Proceedings of 26th Seminar on Current Trends, in Theory and Practice of Informatics, Milovy, Czech Republic, November 27 - December 4. ISBN 978-3-540-66694-3. Lecture Notes on Computer Science pp. 203-249.

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Other: misc

P. M. A. Sloot. De som der delen - inaugural address. ISBN 978-90-5629-084-9.

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Article

D. Dubbeldam, A. G. Hoekstra, and P. M. A. Sloot. Computational aspects of multispecies lattice-gas automata. Lecture Notes in Computer Science 1593, pp. 339-349.

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Proceedings

D. Dubbeldam, A. G. Hoekstra, and P. M. A. Sloot. Computational aspects of multispecies lattice-gas automata. In: Proceedings of the fifth annual conference of the Advanced School for Computing and Imaging ASCI, June 15-17, 1999. June 1999, pp. 267-273.

Citation Links
Proceedings

D. Dubbeldam, A. G. Hoekstra, and P. M. A. Sloot. Computational Aspects of Multi-Species Lattice-Gas Automata. In: High-Performance Computing and Networking (HPCN Europe '99), Amsterdam, The Netherlands. ISBN 978-3-540-65821-4. Lecture Notes in Computer Science pp. 339-349.

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Article

D. Talia and P. M. A. Sloot. Cellular automata: Promise and prospects in computational science. Future Generation Computer Systems 16(2-3,dec.99), pp. v-vii.

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Article

S. F. Portegies Zwart, C. H. Lee, and H. K. Lee. Can Precessing Jets Explain the Light Curves of Gamma-Ray Bursts?. Astrophysical Journal 520, pp. 666-679.

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Proceedings

M. Bergman, G. D. van Albada, H. Simon, H. Buchner, P. M. A. Sloot, and V. Friedrich. Brain activity and parallel computing. In: Proceedings of the fifth annual conference of the Advanced School for Computing and Imaging ASCI, June 15-17, 1999. pp. 44-45.

Citation Links
Proceedings

Y. E. Gorbachev and E. V. Zudilova-Seinstra. 3-D Visualization for Presenting Results of Numerical Simulation. In: High-Performance Computing and Networking (HPCN Europe '99), Amsterdam, The Netherlands. 1593, pp. 1250-1253.

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1998

MSc Thesis

E. Berk. Towards a parallel implementation of Lindenmayer systems.

Citation
Proceedings

S. F. Portegies Zwart. The dissipation of tidally truncated star clusters with stellar evolution: Escape from a crisis in Fokker-Planck models. In: IAU Colloq. 172: Impact of Modern Dynamics in Astronomy. p. E70.

Citation Links
Proceedings

S. F. Portegies Zwart and K. Takahashi. The disruption of globular star clusters in the galaxy: A comparative analysis between N-body and Fokker-Planck models. In: Dynamical Studies of Star Clusters and Galaxies, Parallel Meeting P5 of Prospects of Astronomy and Astrophysics for the New Millennium, Joint European and National Astronomy Meeting for 1998 (JENAM98), 7th European and Annual Czech Astronomical Society Conference, held in Prague, Czech Rep., Sep. 9-12, 1998, Convenors and Editors of P5: P. Kroupa, J. Palous, and R. Spurzem, Abstract Book published by ESA Publ. Division, c/o ESTEC, Noordwijk, The Netherlands, p. 193.. p. 193.

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Article

W. Hoffmann. The Gauss-Huard algorithm and LU factorization. Linear Algebra and Its Applications 275, pp. 281-286.

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Article

K. Takahashi and S. F. Portegies Zwart. The Disruption of Globular Star Clusters in the Galaxy: A Comparative Analysis between Fokker-Planck and N-Body Models. Astrophysical Journal Letters 503, p. L49.

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Article

S. F. Portegies Zwart, C. A. Tout, and H. M. Lee. Stellar Evolution and Dynamics in Star Clusters. Highlights of Astronomy 11, p. 622.

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Other: misc

A. G. Hoekstra and A. Bode. Special Issue on High Performance Computing and Networking Europe 1997. Future Generation Computer Systems 13(4--5), pp. 247-400.

Citation
Other: misc

J. A. Kaandorp. Special Issue on EURO-VR Mini-conference '97: Virtual reality in industry and research. Future Generation Computer Systems 14(3-4), pp. 143-300.

Citation
Article

A. Koponen, M. Kataja, J. Timonen, and B. D. Kandhai. Simulation of single-fluid flow in Porous Media. International Journal of Modern Physics C 9, pp. 1505-1522.

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Proceedings

M. A. Zatevakhin, V. V. Krzhizhanovskaya, and Y. E. Gorbachev. Simulation of a-Si:H Film Growth During Remote PECVD. In: Europhysics Conference Abstracts. 22/H, pp. 488-489.

Citation Links
MSc Thesis

M. Bani Aman. Reactive lattice gas automaton.

Citation
Report

J. M. Braan, A. G. Hoekstra, and P. M. A. Sloot. Prototyping an HPCNet Distance Learning Environment: Rationale and Implementation.

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MSc Thesis

J. M. Braan. Prototyping a distance learning environment on the internet: rationale and implementation.

Citation
Chapter

P. M. A. Sloot, M. T. Bubak, and L. O. Hertzberger. Proceedings high-performance computing and networking (HPCN Europe '98 Amsterdam). In: Lecture notes in computer science. ISBN 3540644431, 9783540644439.

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Book

P. M. A. Sloot, M. T. Bubak, and L. O. Hertzberger. Proceedings High-Performance Computing and Networking (HPCN Europe '98), Amsterdam, The Netherlands.

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Article

A. Koponen, B. D. Kandhai, E. Hellen, and M. Alava. Permeability of three-dimensional random fibre webs. Physical Review Letters 80, pp. 716-719.

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Proceedings

D. Kandhai, D. Dubbeldam, A. G. Hoekstra, and P. M. A. Sloot. Parallel lattice-Boltzmann simulation of fluid flow in centrifugal elutration chambers. In: High-Performance Computing and Networking. ISBN 9783540697831. pp. 173-182.

Abstract Citation Links
Article

S. F. Portegies Zwart, P. Hut, J. Makino, and S. L. W. McMillan. On the dissolution of evolving star clusters. Astronomy & Astrophysics 337, pp. 363-371.

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Proceedings

M. T. Bubak, W. Funika, K. A. Iskra, R. Maruszewski, and J. Mo'scinski. Off-line and On-line Performance Monitoring Tools. In: High Performance Computing on Hewlett-Packard Systems, Proceedings of HiPer'98 Conference, Zurich, Switzerland, October 14-16 1998. pp. 200-206.

Citation Links
Proceedings

M. T. Bubak, W. Funika, K. A. Iskra, R. Maruszewski, and J. Mo'scinski. Off-line Performance Monitoring using OMIS. In: Recent Advances in Parallel Virtual Machine and Message Passing Interface, Proceedings of the 5th European PVM/MPI Users' Group Meeting, Liverpool, England, September 1998. 1497, pp. 5-11.

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MSc Thesis

S. S. Ghoreifi. Modeling accretive growth with particle systems using pair interactions.

Citation
Chapter

M. A. Kartawidjaja and A. G. Hoekstra. Memory efficiency of parallel programs and memory bounded speedup. In: High-performance computign and networking (HPCN Europe '98). ISBN 3540644431, 9783540644439. pp. 766-775.

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PhD Thesis

J. F. de Ronde. Mapping in High Performance Computing - A Case Study in Finite Element Simulation. Supervised by P. M. A. Sloot and L. O. Hertzberger.

Citation Links
Proceedings

A. Machi' and P. F. Spinnato. MPI parallelisation of a fluid-dynamical code for astrophysical applications, optimised and tested on various computing architectures. In: Proceedings of the workshop CAPI98.

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Proceedings

A. Machi' and P. F. Spinnato. MPI parallelisation of a fluid-dynamical SPH code and optimisation of such code by means of dynamic geometric decompisition of the integration domain. In: Proceedings of the IV national conference of SIMAI.

Citation Links
Proceedings

B. D. Kandhai, D. Dubbeldam, A. G. Hoekstra, and P. M. A. Sloot. Lattice boltzmann hydrodynamics in centrifugal elutriation chambers. In: ASCI'98 : proceedings of the fourth annual conference of the Advanced School for Computing and Imaging. ISBN 9080308633, 9789080308633. pp. 269-274.

Citation Links
Proceedings

B. D. Kandhai, D. Dubbeldam, A. G. Hoekstra, and P. M. A. Sloot. Lattice Boltzmann hydrodynamics in Centrifugal Elutriation Chambers. In: Proceedings of the fourth annual conference of the Advanced School for Computing and Imaging. pp. 269-274.

Citation
Article

B. D. Kandhai, A. Koponen, A. G. Hoekstra, M. Kataja, J. Timonen, and P. M. A. Sloot. Lattice Boltzmann Hydrodynamics on Parallel Systems. Computer Physics Communications 111, pp. 14-26.

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Article

A. G. Hoekstra, M. D. Grimminck, and P. M. A. Sloot. Large scale simulations of elastic light scattering by a fast discrete dipole approximation. International Journal of Modern Physics C 9(1), pp. 87-102.

Abstract Citation Links
Article

A. G. Hoekstra, M. D. Grimminck, and P. M. A. Sloot. Large scale simulations of elastic light scattering by a fast dipole approximation. International Journal of Modern Physics C pp. 87-102.

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