Publications of the CSL group

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2003

Proceedings

A. G. Hoekstra, J. van 't Hoff, A. M. M. Artoli, and P. M. A. Sloot. Lattice BGK Simulations of Unsteady Flow in a 2D Elastic Tube. In: Computational Science - ICCS 2003. ISBN 3540401946, 9783540401940. 2657, pp. 997-1006.

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Article

I. V. Surovtsev, M. A. Yurkin, A. N. Shvalov, V. M. Nekrasov, G. F. Sivolobova, A. A. Grajdantseva, V. P. Maltsev, and A. V. Chernyshev. Kinetics of the initial stage of immunoagglutionation studied with the scanning flow cytometer. Colloids and Surfaces B: Biointerfaces 32, pp. 245-255.

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Proceedings

I. V. Surovtsev, M. A. Yurkin, A. N. Shvalov, and G. F. Sivolobova. Kinetic study of the initial stages of agglutination process with scanning flow cytometer. In: Manipulation and Analysis of Biomolecules, Cells and Tissues. ISBN 9780819447623. pp. 354-363.

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Article

B. D. Kandhai, J. J. Derksen, and H. E. A. Van den Akker. Interphase drag coefficients in gas-solid flows. AIChE Journal 49, pp. 1060-1065.

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MSc Thesis

D. P. Gavidia Simonetti. Interactive Visualization of Biomedical Data. Supervised by E. V. Zudilova.

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PhD Thesis

R. G. Belleman. Interactive Exploration in Virtual Environments. ISBN 9057761017, 9789057761010. Supervised by P. M. A. Sloot.

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Article

M. Rohde, B. D. Kandhai, J. J. Derksen, and H. E. A. Van den Akker. Improved bounce-back methods for no-slip walls in lattice-Boltzmann schemes: Theory and simulations. Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 67, p. 066703.

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Proceedings

Z. Zhao, G. D. van Albada, A. Tirado-Ramos, K. Zajac, and P. M. A. Sloot. ISS-Studio: a prototype for a user-friendly tool for designing interactive experiments in Problem Solving Environments. In: Computational science - ICCS 2003. ISBN 3540401946, 9783540401940. 1, pp. 679-688.

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PhD Thesis

P. F. Spinnato. Hybrid Systems for N-body Simulations. ISBN 9057761092, 9789057761096. Supervised by P. M. A. Sloot and G. D. van Albada.

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Proceedings

P. M. A. Sloot, G. D. van Albada, and E. V. Zudilova-Seinstra. Grid-based Interactive Visualisation of Medical Images. In: Proceedings of the First European HealthGrid Conference. pp. 57-66.

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Article

C. Salzberg, A. Antony, and H. Sayama. Genetic diversification and complex genealogy of self-replicators discovered in simple cellular automata: A preliminary report. Journal of Three-dimensional Images 17(4), pp. 103-109.

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Proceedings

C. Salzberg, A. Antony, and H. Sayama. Genetic diversification and adaptation of self-replicators discovered in simple cellular automata. In: Proceedings of the Sixth International Conference on Humans and Computers (HC-2003). pp. 194-199.

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Proceedings

L. A. Naumov. Generalized Coordinates for Cellular Automata Grids. In: Computational Science - ICCS 2003, Melbourne, Australia and St. Petersburg, Russia, Proceedings Part II. 2658, pp. 869-878.

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Proceedings

C. M. Boily, P. Pastsis, S. F. Portegies Zwart, R. Spurzem, and C. Theis. Galactic and Stellar Dynamics, Proceedings of JENAM 2002, held in Porto, Portugal, 3-6 September, 2002. EAS Publications Series 10.

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Proceedings

C. M. Boily, P. Pastsis, S. F. Portegies Zwart, R. Spurzem, and C. Theis. Galactic and Stellar Dynamics. In: Galactic and Stellar Dynamics. 10.

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Proceedings

A. Tirado Ramos, K. Zajac, Z. Zhao, P. M. A. Sloot, G. D. van Albada, and M. T. Bubak. Experimental Grid Access for Dynamic Discovery and Data Transfer in Distributed Interactive Simulation Systems. In: Computational Science - ICCS 2003, Proceedings Part I. ISBN 3540401946, 9783540401940. 2657, pp. 284-292.

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Chapter

G. E. Brown, C. H. Lee, S. F. Portegies Zwart, and H. A. Bethe. Evolution of Neutron Star, Carbon-Oxygen White Dwarf Binaries. In: Formation and evolution of black holes in the Galaxy: selected papers with commentary editor. pp. 345-354.

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Proceedings

S. L. W. McMillan and S. F. Portegies Zwart. Evolution of Dense Star Clusters Near the Galactic Center. In: Dynamics and Evolution of Dense Stellar Systems. 11, p. 47.

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MSc Thesis

C. P. Salzberg. Emergent Evolutionary Dynamics of Self-Reproducing Cellular Automata. Supervised by Hiroki Sayama.

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MSc Thesis

C. Shen. Effectiveness of Approximation Models for Multi-Disciplinary Design Optimization.

Citation
Article

D. Pooley, W. H. G. Lewin, S. F. Anderson, H. Baumgardt, A. V. Filippenko, B. M. Gaensler, L. Homer, P. Hut, V. M. Kaspi, J. Makino, B. Margon, S. L. W. McMillan, S. F. Portegies Zwart, M. van der Klis, and F. Verbunt. Dynamical Formation of Close Binary Systems in Globular Clusters. Astrophysical Journal 591(2), pp. L131-L134.

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Book

L. A. Naumov. Dynamic Programming.

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Article

R. M. H. Merks, A. G. Hoekstra, J. A. Kaandorp, and P. M. A. Sloot. Diffusion-limited Aggregation in Laminar Flows. International Journal of Modern Physics C 14(9), pp. 1171-1182.

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Proceedings

D. Kranzlmüller, M. Scarpa, and J. Volkert. DeWiz - A Modular tool Architecture for Parallel Program Analysis. In: Euro-Par 2003. Parallel Processing, 9th International Euro-Par Conference, Klagenfurt, Austria, August 26-29, 2003. Proceedings. ISBN 978-3-540-40788-1. Lecture Notes in Computer Science 2790, pp. 74-80.

Citation
Book

P. M. A. Sloot, D. Abrahamson, A. V. Bogdanov, J. J. Dongarra, A. Y. Zomaya, and Y. E. Gorbachev. Computational Science-ICCS 2003, Melbourne, Australia and St. Petersburg, Russia, Proceedings Part II.

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Book

P. M. A. Sloot, D. Abrahamson, A. V. Bogdanov, J. J. Dongarra, A. Y. Zomaya, and Y. E. Gorbachev. Computational Science-ICCS 2003, Melbourne, Australia and St. Petersburg, Russia, Proceedings Part I.

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Proceedings

P. M. A. Sloot, D. Abramson, A. V. Bogdanov, J. Dongarra, A. Y. Zomaya, and Y. E. Gorbachev. Computational Science - ICCS 2003, Melbourne, Australia and St. Petersburg, Russia, Proceedings Part IV. ISBN 978-3-540-40197-1. Lecture Notes in Computer Science 2660.

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Proceedings

P. M. A. Sloot, D. Abramson, A. V. Bogdanov, J. Dongarra, A. Y. Zomaya, and Y. E. Gorbachev. Computational Science - ICCS 2003, Melbourne, Australia and St. Petersburg, Russia, Proceedings Part III. ISBN 978-3-540-40196-4. Lecture Notes in Computer Science 2659.

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Proceedings

B. Ludäscher, I. Altintas, and A. Gupta. Compiling Abstract Scientific Workflows into Web Service Workflows. In: Proceedings of the 15th Intl. Conference on Scientific and Statistical Database Management(SSDBM).

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Article

L. A. Naumov and A. A. Shalyto. Cellular Automata. Realization and Experiments. World of PC 8, pp. 71-77.

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PhD Thesis

R. M. H. Merks. Branching growth in stony corals: a modelling approach. ISBN 9057761033, 9789057761034. Supervised by P. M. A. Sloot, A. G. Hoekstra, and J. A. Kaandorp.

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Proceedings

R. M. H. Merks, A. G. Hoekstra, J. A. Kaandorp, and P. M. A. Sloot. Branching and compactification in a model of coral growth: a critical reinvestigation of the effect of hydrodynamics. In: Mathematical modelling & Computing in Biology and Medicine; 5th ESMTB Conference 2002. pp. 539-544.

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Proceedings

L. A. Naumov and A. A. Shalyto. Automata Theory for Multi-Agent Systems Implementation. In: Proceedings of International Conference Integration of Knowledge Intensive Multi-Systems: Modeling, Exploration and Engineering (KIMAS-03). pp. 65-71.

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Proceedings

L. A. Naumov and A. A. Shalyto. Automata Theory for Applied Programming. In: Second International Conference on the Problems of Controlling. Chosen Papers in Two Volumes. 2, pp. 86-92.

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Proceedings

L. A. Naumov and A. A. Shalyto. Automata Programming as a Sort of Synchronous Programming. In: Proceedings of East-West Design & Test Conference (EWDTC 2003). pp. 140-143.

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Proceedings

Michael Lees, Brian Logan, Georgios Theodoropoulos, and David Al-Dabass. Adaptive Optimistic Synchronisation for Multi-Agent Simulation. In: Proceedings of the 17th European Simulation Multiconference. pp. 77-82.

Citation
Proceedings

A. G. Hoekstra and V. A. Babenko. Accuracy of internal fields inside spheroids in DDA-simulations of light scattering. In: Electromagnetic and Light Scattering Theory and Applications VII. ISBN 3887225791, 9783887225797. pp. 123-126.

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Article

A. M. M. Artoli, A. G. Hoekstra, and P. M. A. Sloot. Accelerated Lattice BGK method for unsteady simulations through Mach number annealing. International Journal of Modern Physics C 14(6), pp. 835-847.

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Proceedings

P. M. A. Sloot, C. A. B. Boucher, I. Kiryukhin, K. Saskov, and A. V. Boukhanovsky. A grid-based problem-solving environment for biomedicine. In: Proceedings of the First European HealthGrid Conference. pp. 300-323.

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Proceedings

Y. E. Gorbachev, M. A. Zatevakhin, V. V. Krzhizhanovskaya, and A. A. Ignatiev. A Software-Hardware System for Simulation of Technological Devices on Distributed Computer Clusters. In: Proceedings of the X All-Russian conference Telematika'2003. 1, pp. 165-167.

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Proceedings

I. Altintas, S. Bhagwanani, D. Buttler, S. Chandra, Z. Cheng, M. Coleman, T. Critchlow, A. Gupta, W. Han, L. Liu, B. Ludäscher, C. Pu, R. Moore, A. Shoshani, and M. Vouk. A Modeling and Execution Environment for Distributed Scientific Workflows. In: Proceedings of the 15th Intl. Conference on Scientific and Statistical Database Management(SSDBM). pp. 247-250.

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MSc Thesis

J. Xiao. A High Performance Distributed Computing Architecture for Molecular Image-Guided Local Drug Delivery -- An exercise in scenario based architecture design using the AFCR model.

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Article

H. Baumgardt, J. Makino, P. Hut, S. L. W. McMillan, and S. F. Portegies Zwart. A Dynamical Model for the Globular Cluster G1. Astrophysical Journal 589(1), pp. L25-L28.

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2002

Article

R. G. Ghulghazaryan, N. S. Ananikian, and P. M. A. Sloot. Yang-Lee zeros of the Q-state Potts model on recursive lattices. Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 66, pp. 1-9.

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MSc Thesis

T. Li. Web Services Technology -- Design, Implementation and Evaluation.

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Article

H. Afsarmanesh, R. G. Belleman, A. S. Z. Belloum, A. Benabdelkader, J. F. J. van den Brand, G. B. Eijkel, A. Frenkel, C. Garita, D. L. Groep, R. M. A. Heeren, Z. W. Hendrikse, L. O. Hertzberger, J. A. Kaandorp, E. C. Kaletas, V. Korkhov, C. T. A. M. de Laat, P. M. A. Sloot, D. Vasunin, A. Visser, and H. H. Yakali. VLAM-G: A Grid-based virtual laboratory. Scientific Programming 10(2), pp. 173-181.

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Proceedings

I. V. Surovtsev, A. A. Grajdantseva, and M. A. Yurkin. Use of Scanning Flow Cytometry for biodetection via earliest stages of agglutination immunoassay. In: Proceedings of the Chemical Biological Medical Treatment Symposium IV.

Citation Links
MSc Thesis

A. Hendriks. Towards 3D finite difference simulations of fluid flow in an interactive virtual reality environment.

Citation
Proceedings

P. F. Spinnato, S. F. Portegies Zwart, M. Fellhauer, G. D. van Albada, and P. M. A. Sloot. Tools and techniques for N-body Simulations. In: Proceedings of the 1st workshop on Computational Astrophysics in Italy.

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Proceedings

B. Ludäscher, I. Altintas, and A. Gupta. Time to Leave the Trees: from Syntactic to Conceptual Querying of XML. In: XML-based Data Management and Multimedia Engineering--EDBT 2002 Workshops. 2490, pp. 148-168.

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Article

R. M. H. Merks, A. G. Hoekstra, and P. M. A. Sloot. The moment propagation method for advection-diffusion in the lattice Boltzmann method: validation and Péclet number limits. Journal of computational Physics 183, pp. 563-576.

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Proceedings

P. F. Spinnato, M. Felhauer, and S. F. Portegies Zwart. The efficiency of the spiral- in of a black hole to the Galactic centre. In: eprint arXiv:astro-ph/0212494.

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Article

S. F. Portegies Zwart and S. L. W. McMillan. The Runaway Growth of Intermediate-Mass Black Holes in Dense Star Clusters. Astrophysical Journal 576(2), pp. 899-907.

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Article

K. A. Iskra, R. G. Belleman, G. D. van Albada, J. Santoso, P. M. A. Sloot, H. E. Bal, H. J. W. Spoelder, and M. T. Bubak. The Polder Computing Environment, a system for interactive distributed simulation. Concurrency and Computation: Practice and Experience 14, pp. 1313-1335.

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Article

S. F. Portegies Zwart, J. Makino, S. L. W. McMillan, and P. Hut. The Lives and Deaths of Star Clusters near the Galactic Center. Astrophysical Journal 565(1), pp. 265-279.

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Proceedings

P. F. Spinnato and S. F. Portegies Zwart. The Infall of Dense Star Clusters into the Galactic Centre. In: Proceedings of the 57th annual Nederlandse Astronomen Conferentie.

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Article

D. Pooley, W. H. G. Lewin, L. Homer, S. Anderson, B. Margon, F. Verbunt, V. M. Kaspi, N. D'Amico, B. M. Gaensler, S. F. Portegies Zwart, M. van der Klis, S. L. W. McMillan, J. Makino, D. Fox, A. V. Filippenko, and P. Hut. The Close Binary Population of Globular Clusters Revealed by Chandra. American Astronomical Society Meeting 34(4), p. #129.01.

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Book

L. A. Naumov. Tasks Solving for the Correspondence School of Modern Programming. Lesson 10: Codes and Data Compression. Part 2..

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Proceedings

Dick van Albada and Peter Sloot. Surfing the grid - Dynamic task migration in the polder metacomputer project. In: Recent Advances in Parallel Virtual Machine and Message Passing Interface - 9th European PVM/MPI Users' Group Meeting, Proceedings. ISBN 3540442960, 9783540442967, 9783540442967. pp. 4-5.

Abstract Citation Links
Proceedings

G. D. van Albada and P. M. A. Sloot. Surfing the Grid - Dynamic Task Migration in the Polder Metacomputer Project. In: Proceedings of the 9th European PVM/MPI Users' Group Meeting on Recent Advances in Parallel Virtual Machine and Message Passing Interface. ISBN 978-3-540-44296-7. pp. 4-5.

Citation
Article

J. D. Adams, J. R. Stauffer, M. F. Skrutskie, D. G. Monet, S. F. Portegies Zwart, K. A. Janes, and C. A. Beichman. Structure of the Praesepe Star Cluster. Astronomical Journal 124(3), pp. 1570-1584.

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Proceedings

R. M. H. Merks, A. G. Hoekstra, J. A. Kaandorp, and P. M. A. Sloot. Spontaneous branching in a polyp oriented model of stony coral growth. In: Computational Science- ICCS 2002, Proceedings Part I. 2329, pp. 88-96.

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Proceedings

Michael Lees, Brian Logan, and Georgios Theodoropoulos. Simulating Agent-Based Systems with HLA: The case of SIM\_AGENT. In: Proceedings of the 2002 European Simulation Interoperability Workshop. pp. 285-293.

Citation
Article

B. J. Overeinder, A. Schoneveld, and P. M. A. Sloot. Self-Organized Criticality in Optimistic Simulation of Correlated Systems. Parallel and Distributed Computing Practices 4(1), pp. 61-75.

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Article

D. M. Peterson, Y. Liu, and S. F. Portegies Zwart. Selection of the Space Interferometry Mission Astrometric Grid. Publications of the Astronomical Society of the Pacific 114(799), pp. 955-973.

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Proceedings

Z. Zhao, R. G. Belleman, G. D. van Albada, and P. M. A. Sloot. Scenario Switches and State Updates in an Agent-based Solution to Constructing Interactive Simulation Systems. In: Proceedings of the Communication Networks and Distributed Systems Modeling and Simulation Conference (CNDS 2002). pp. 3-10.

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Proceedings

K. A. Iskra, G. D. van Albada, and P. M. A. Sloot. Rollbacks in Time Warp - Analysis and Modelling. In: ASCI 2002, Proceedings of the eighth annual conference of the Advanced School for Computing and Imaging. ISBN 9080308676, 9789080308671. pp. 88-94.

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Proceedings

Z. Zhao, R. G. Belleman, G. D. van Albada, and P. M. A. Sloot. Reusability and Efficiency in Constructing Interactive Simulation Systems. In: ASCI 2002, Proceedings of the eighth annual conference of the Advanced School for Computing and Imaging. ISBN 9080308676, 9789080308671. pp. 268-275.

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Article

M. T. Bubak, D Zbik, G. D. van Albada, K. A. Iskra, and P. M. A. Sloot. Portable Library of Migratable Sockets. Scientific Programming 9, pp. 211-222.

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Proceedings

P. F. Spinnato, G. D. van Albada, and P. M. A. Sloot. Performance Modelling of Hiërarchical N-body Codes Running on Hybrid Architectures. In: ASCI 2002, Proceedings of the eight annual conference of the Advanced School for Computing and Imaging. ISBN 9080308676, 9789080308671. pp. 211-218.

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Article

B. D. Kandhai, U. Tallarek, D. Hlushkou, A. Hoekstra, P. M. A. Sloot, and H. Van As. Numerical simulation and measurement of liquid hold-up in biporous media containing discrete stagnant zones. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 360(1792), pp. 521-534.

Abstract Citation Links
MSc Thesis

A. Suinesiaputra. Multiscale optic flow analysis for Magnetic Resonance tagging.

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MSc Thesis

M. ten Dam. Multi-disciplinair ontwerp en multi-objective optimalisatie van een blended-wing-body vliegtuigconfiguratie met behulp van benaderingsmodellen.

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MSc Thesis

F. Chen. Model of Drug Therapy for HIV Infection using Non-uniform Cellular Automata.

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MSc Thesis

F. Alimadhi. Mobile Internet: Wireless access to Web-based interfaces of legacy simulations.

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Article

L. A. Naumov. Methods of Task Decomposition into Subtasks. Computer Instruments in Education 2002, pp. 94-106.

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MSc Thesis

K. Oinonen. Local curvature as a measurement of shape for three-dimensional complex objects.

Citation
Article

A. V. Porubov, G. A. Maugin, V. V. Krzhizhanovskaya, and V. V. Gursky. Large Solitary Waves Formation in Microstructured Solids. JOURNAL NOT IN LIST p. 26.

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MSc Thesis

J. M. Ragas. Interactive visualization of flowfields in an Immersive Virtual Environment -- Applied to the test case of simulated abdominal vascular reconstruction.

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Article

A. Tirado Ramos, J. Hu, and K. P. Lee. Information Object Definition-based Unified Modeling Language Representation of DICOM Structured Reporting: A Case Study of Transcoding DICOM to XML. Journal of the American Medical Informatics Association 9, pp. 63-72.

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Article

B. D. Kandhai, D. Hlushkou, A. G. Hoekstra, P. M. A. Sloot, H. van As, and U. Tallarek. Influence of Stagnant Zones on Transient and Asymptotic Dispersion in Macroscopically Homogeneous Porous Media. Physical Review Letters 88(23), pp. 1-4.

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Proceedings

R. G. Belleman and R. Shulakov. High performance distributed simulation for interactive simulated vascular reconstruction. In: LNCS; Computational Science - ICCS 2002, Proceedings Part III. 2331, pp. 265-274.

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MSc Thesis

W. Caarls. Genetic Alorithms Visualisation.

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Article

S. F. Portegies Zwart. Eenzame Zon - Berekening van de evolutie van sterrenhopen. Kunst en wetenschap 11(2), pp. 9-10.

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Chapter

R. G. Belleman and P. M. A. Sloot. Dynamic Exploration Environments. In: Dealing with the data flood (mining data, text and multimedia. pp. 771-787.

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Proceedings

V. V. Krzhizhanovskaya, M. A. Zatevakhin, A. A. Ignatiev, Y. E. Gorbachev, and P. M. A. Sloot. Distributed Simulation of Silicon-Based Film Growth. In: Parallel Processing and Applied Mathematics, 4th International Conference, PPAM 2001, Naleczow, Poland. pp. 879-887.

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MSc Thesis

A. Wibisono. Cross Cluster Migration using Dynamite -- Remote File Access Support.

Abstract Citation Links
Proceedings

P. M. A. Sloot, C. J. K. Tan, J. J. Dongarra, and A. G. Hoekstra. Computational Science - ICCS 2002, Proceedings Part III. In: Lecture Notes in Computer Science. 2331.

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Proceedings

P. M. A. Sloot, C. J. K. Tan, J. J. Dongarra, and A. G. Hoekstra. Computational Science - ICCS 2002, Proceedings Part II. In: Lecture Notes in Computer Science. 2330.

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Book

P. M. A. Sloot, C. J. K. Tan, J. J. Dongarra, and A. G. Hoekstra. Computational Science - ICCS 2002. ISBN 9783540460435. 1.

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Proceedings

P. M. A. Sloot, F. Chen, and C. A. B. Boucher. Cellular Automata Model of Drug Therapy for HIV Infection. In: 5th International Conference on Cellular Automata for Research and Industry, ACRI 2002. 2493, pp. 282-293.

Citation Links
Proceedings

R. M. H. Merks, A. G. Hoekstra, J. A. Kaandorp, and P. M. A. Sloot. Branching and compactification in a model of coral growth: a critical reinvestigation of the effect of hydrodynamics. In: ECMTB2002: 5th Conference of the European Society of the Mathematical and Theoretical Biology, book of abstracts.

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Proceedings

A. M. M. Artoli, A. G. Hoekstra, and P. M. A. Sloot. Accuracy of 2D pulsatile flow in the lattice Boltzmann BGK method. In: LNCS; Computational Science - ICCS 2002, Proceedings Part I. 2329, pp. 361-370.

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Proceedings

Z. Zhao, R. G. Belleman, G. D. van Albada, and P. M. A. Sloot. AG-IVE: an Agent based solution to constructing Interactive Simulation Systems. In: Computational Science - ICCS 2002, Proceedings Part I. 2329, pp. 693-703.

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Article

S. F. Portegies Zwart, D. Pooley, and W. H. G. Lewin. A dozen colliding wind X-ray binaries in the star cluster R136 in the 30 Doradus region. Astroph. J. 574(2), pp. 762-770.

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MSc Thesis

E. A. Koopman. A comparison of a particle tracking and a lattice Boltzmann based method for advection diffusion problems.

Citation
Proceedings

P. F. Spinnato, G. D. van Albada, and P. M. A. Sloot. A Versatile Simulation Model for Hiërarchical Treecodes. In: Computational Science - ICCS 2002, Proceedings Part I. ISBN 3540435913, 9783540435914. 2329, pp. 176-185.

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Report

P. F. Spinnato, G. D. van Albada, and P. M. A. Sloot. A Versatile Simulation Model for Hierarchical Treecodes.

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Proceedings

J. Santoso, G. D. van Albada, T. Basaruddin, and P. M. A. Sloot. A Simulation Environment for Job Scheduling on Distributed Systems. In: Computational Science - ICCS 2002, Proceedings Part I. 2329, pp. 653-662.

Citation Links
Proceedings

K. Zajac, M. Bubak, M. Malawski, P. M. A. Sloot, and A. Tirado-Ramos. A Proposal of Services For Managing Interactive Grid Applications. In: Second Cracow Grid Workshop. pp. 155-163.

Abstract Citation Links