Publications of the CSL group

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2010

• PhD Thesis
  J. J. van der Ham. A Semantic Model for Complex Computer Networks: The Network Description Language. ISBN 978-90-814160-2-3. Supervised by P. M. A. Sloot and C. T. A. M. de Laat.
  Citation Links

2009

• Article
  N. Graf, A. Hoppe, E. Georgiadi, R. Belleman, C. Desmedt, D. Dionysiou, M. Erdt, J. Jacques, E. Kolokotroni, A. Lunzer, M. Tsiknakis, and G. Stamatakos. ‘In silico' oncology for clinical decision making in the context of nephroblastoma. Klinische Pädiatrie 221(3), pp. 141-149.
  Abstract Citation Links
• Chapter
  M. Bubak, M. Malawski, T. Gubala, M. Kasztelnik, P. Nowakowski, D. Harezlak, T. Bartynski, J. Kocot, E. Ciepiela, W. Funika, D. Krol, B. Balis, M. Assel, and A. Tirado-Ramos. Virtual Laboratory for Collaborative Applications. In: Handbook of research on computational grid technologies for life sciences, biomedicine, and healthcare. ISBN 9781605663746. pp. 531-551.
  Citation Links
• Article
  R. J. Allison, S. P. Goodwin, R. J. Parker, S. F. Portegies Zwart, R. de Grijs, and M. B. N. Kouwenhoven. Using the minimum spanning tree to trace mass segregation. Monthly Notices of the Royal Astronomical Society 395(3), pp. 1449-1454.
  Abstract Citation Links
• Book
  E. Zudilova-Seinstra, T. Adriaansen, and R. van Liere. Trends in interactive visualization: State-of-the-art survey. ISBN 9781848002685.
  Abstract Citation Links
• Proceedings
  A. Caiazzo, D. Evans, J.-L. Falcone, J. Hegewald, E. Lorenz, B. Stahl, D. Wang, J. Bernsdorf, B. Chopard, J. Gunn, R. Hose, M. Krafczyk, P. Lawford, R. Smallwood, D. Walker, and A. G. Hoekstra. Towards a Complex Automata multiscale model of in-stent restenosis. In: Computational Science – ICCS 2009. ISBN 9783642019708. I, pp. 705-714.
  Abstract Citation Links
• Proceedings
  G. de Marchi, F. Paresce, and S. F. Portegies Zwart. Time Evolution of the Stellar Mass Function of Galactic Clusters. In: American Astronomical Society Meeting #213, #442.06 Abstracts. American Astronomical Society Meeting Abstracts 41, p. 320.
  Citation Links
• Article
  G. De Marchi, F. Paresce, and S. Portegies Zwart. Time Evolution of the Stellar Mass Function of Galactic Clusters. Bulletin - American Astronomical Society 41, p. 320.
  Citation Links
• Proceedings
  J. Meizner, M. Malawski, S. Naqvi, and M. Bubak. Threat model for MOCCA component environment. In: Cracow'08 Grid Workshop: October 13-15, 2008 Cracow, Poland: proceedings. ISBN 9788361433002. pp. 94-102.
  Citation Links
• Proceedings
  A. Tirado-Ramos and A. Shiflet. Third Workshop on Teaching Computational Science (WTCS 2009). In: Computational Science – ICCS 2009. ISBN 9783642019739. II, pp. 3-4.
  Abstract Citation Links
• Article
  V. V. Korkhov, J. T. Moscicki, and V. V. Krzhizhanovskaya. The user-level scheduling of divisible load parallel applications with resource selection and adaptive workload balancing on the Grid. IEEE Systems Journal 3(1), pp. 121-130.
  Abstract Citation Links
• Article
  S. F. Portegies Zwart. The lost siblings of the Sun. Astrophysical Journal Letters 696(1), pp. L13-L16.
  Abstract Citation Links
• Article
  J. C. A. Miller-Jones, P. G. Jonker, G. Nelemans, S. Portegies Zwart, V. Dhawan, W. Brisken, E. Gallo, and M. P. Rupen. The formation of the black hole in the X-ray binary system V404 Cyg. Monthly Notices of the Royal Astronomical Society 394(3), pp. 1440-1448.
  Abstract Citation Links
• Article
  E. Glebbeek, E. Gaburov, S. E. de Mink, O. R. Pols, and S. F. Portegies Zwart. The evolution of runaway stellar collision products. Astronomy & Astrophysics 497(1), pp. 255-264.
  Abstract Citation Links
• Report
  G. S. Cook, R. G. Belleman, M. Scarpa, and C. T. A. M. de Laat. The Cook Report on Internet Protocol on WiVR: a Window into Virtual Reality.
  Citation
• Report
  G. S. Cook, R. G. Belleman, R. J. Strijkers, M. L. Cristea, R. J. Meijer, and C. T. A. M. de Laat. The Cook Report on Internet Protocol on Interactive Networks (A User Interface for Appliction Owned Lightpath Networks).
  Citation
• Article
  M. Ashyraliyev, Y. Fomekong-Nanfack, J. A. Kaandorp, and J. G. Blom. Systems biology: parameter estimation for biochemical models. The FEBS Journal 276(4), pp. 886-902.
  Abstract Citation Links
• Proceedings
  J. Kitowski, M. Tura\la, K. Wiatr, M. T. Bubak, A. Kusznir, J. Niwicki, T. Szepieniec, M. Radecki, A. Ozieblo, Z. Mosurska, A. Szymańska, K. Krawentek, and et al.. Structure and status of National Grid Initiative in Poland. In: Cracow'08 Grid Workshop: October 13-15, 2008 Cracow, Poland: proceedings. ISBN 978-83-61433-00-2. pp. 39-51.
  Citation
• PhD Thesis
  J. Vidal Rodriguez. Stochasticity in signal transduction pathways. ISBN 9789090247397. Supervised by P. M. A. Sloot and J. A. Kaandorp.
  Citation Links
• Article
  V. Krzhizhanovskaya. Special section: Simulation of Multiphysics Multiscale Systems: Going Nano. Preface. International Journal for Multiscale Computational Engineering 7(1), pp. vii-viii.
  Citation Links
• Article
  L. Smarr, M. Brown, and C. de Laat. Special section: OptIPlanet - The OptIPuter global collaboratory. Future Generation Computer Systems 25(2), pp. 109-113.
  Abstract Citation Links
• Article
  L. Axner, A. G. Hoekstra, A. Jeays, P. Lawford, R. Hose, and P. M. A. Sloot. Simulations of time harmonic blood flow in the Mesenteric artery: comparing finite element and lattice Boltzmann methods. BioMedical Engineering OnLine 8, p. 23.
  Abstract Citation Links
• Proceedings
  V. V. Krzhizhanovskaya and V. V. Korkhov. Simulation of plasma chemical processes on heterogeneous Grid resourses with adaptive load balancing for parallel solvers (Моделирование плазмохимических процессов на гетерогенных ресурсах Grid с адаптивной балансировкой нагрузки для параллельных солверов). In: Proceedings of the all-Russian supercomputer conference 'Scientific services on the Internet: Scalability, parallelism, efficiency'. ISBN 9785211056978. pp. 351-352.
  Citation Links
• Other: misc
  V. V. Krzhizhanovskaya. Simulation of Multiphysics Multiscale Systems: Going Nano. International Journal for Multiscale Computational Engineering 7(1).
  Citation Links
• Other: misc
  V. V. Krzhizhanovskaya. Simulation of Multiphysics Multiscale Systems: Going Nano. International Journal for Multiscale Computational Engineering, Special Section 7(1), pp. vii-viii.
  Citation Links
• Proceedings
  V. V. Krzhizhanovskaya. Simulation of Multiphysics Multiscale Systems, 6th International Workshop. In: Computational Science – ICCS 2009. ISBN 9783642019708. I, pp. 653-654.
  Abstract Citation Links
• Proceedings
  R. Quax, D. A. Bader, and P. M. A. Sloot. Simulating individual-based models of epidemics in hierarchical networks. In: Computational Science – ICCS 2009. ISBN 9783642019708. I, pp. 725-734.
  Abstract Citation Links
• Article
  J. Cui, J. A. Kaandorp, O. O. Ositelu, V. Beaudry, A. Knight, Y. F. Nanfack, and K. W. Cunningham. Simulating calcium influx and free calcium concentrations in yeast. Cell Calcium 45(2), pp. 123-132.
  Abstract Citation Links
• Chapter
  T. Gubala, M. Bubak, and P. M. A. Sloot. Semantic Integration for Research Environments. In: Handbook of research on computational grid technologies for life sciences, biomedicine, and healthcare. ISBN 9781605663746. pp. 514-530.
  Citation Links
• Article
  E. Gaburov, S. Harfst, and S. Portegies Zwart. SAPPORO: A way to turn your graphics cards into a GRAPE-6. New Astronomy 14(7), pp. 630-637.
  Abstract Citation Links
• Proceedings
  P. Bar, C. Coti, D. Groen, T. Herault, V. Kravtsov, A Schuster, and M. Swain. Running parallel applications with topology-aware grid middleware. In: Proceedings of the 2009 Fifth IEEE International Conference on e-Science. ISBN 9780769538778. pp. 292-299.
  Abstract Citation Links
• Chapter
  E. V. Zudilova-Seinstra, T. Adriaansen, and R. van Liere. Overview of interactive visualization. In: Trends in interactive visualization. ISBN 9781848002685. pp. 3-15.
  Abstract Citation Links
• Proceedings
  D. Groen, S. Harfst, and S. Portegies Zwart. On the origin of grid species: The living application. In: Computational Science – ICCS 2009. ISBN 9783642019708. I, pp. 205-212.
  Abstract Citation Links
• PhD Thesis
  S. S. Msanjila. On inter-organizational trust engineering in networked collaborations: modeling and management of rational trust. ISBN 978-90-5776-196-6. Supervised by P. M. A. Sloot and H. Afsarmanesh.
  Citation Links
• Proceedings
  V. Krzhizhanovskaya. Multi-model multi-scale simulation of complex plasma chemical processes. In: EUCASS Aerospace Thematic Workshop on Fundamentals of Aerodynamic-Flow and Combustion Control by Plasmas, Les Houches, France.
  Citation Links
• MSc Thesis
  N. Zarrabi. Modeling and Simulation of HIV-1 Intracellular Replication. Supervised by P. M. A. Sloot.
  Citation Links
• Proceedings
  M. V. Baryshnikova and V. V. Krzhizhanovskaya. Model development of a PECVD reactor for titanium dioxide film deposition [in Russian]. In: International Conference "38th Science Week". pp. 56-57.
  Citation Links
• Chapter
  M. Postma and P. J. M. van Haastert. Mathematics of experimentally generated chemoattractant gradients. In: Chemotaxis: methods and protocols. ISBN 9781607611974. pp. 473-488.
  Citation Links
• PhD Thesis
  J. Cui. Mathematical modeling of metal ion homeostasis and signaling systems. ISBN 9789088910883. Supervised by P. M. A. Sloot and J. A. Kaandorp.
  Citation Links
• Article
  E. Lorenz, A. G. Hoekstra, and A. Caiazzo. Lees-Edwards boundary conditions for lattice Boltzmann suspension simulations. Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 79(3), p. 036706.
  Abstract Citation Links
• Article
  D. I. Strokotov, M. A. Yurkin, K. V. Gilev, D. R. van Bockstaele, A. G. Hoekstra, N. B. Rubtsov, and V. P. Maltsev. Is there a difference between T- and B-lymphocyte morphology?. Journal of Biomedical Optics 14(6), p. 064036.
  Abstract Citation Links
• Proceedings
  R. Strijkers, L. Muller, M. Cristea, R. Belleman, C. de Laat, P. Sloot, and R. Meijer. Interactive control over a programmable computer network using a multi-touch surface. In: Computational Science – ICCS 2009. ISBN 9783642019739. II, pp. 719-728.
  Abstract Citation Links
• MSc Thesis
  A. Z. \"Ozsoy. Interactive Visualization of Large Medical Datasets on the Grid. Supervised by R. G. Belleman.
  Citation
• MSc Thesis
  F. I. Rusadi. Interactive Visualization of Graphs on Multiple Levels of Detail Using a Direct-Touch Interactive Graphics Device. Supervised by R. G. Belleman.
  Citation Links
• Proceedings
  R. J. Strijkers, L. Y. L. Muller, M. L. Cristea, R. G. Belleman, C. T. A. M. de Laat, P. M. A. Sloot, and R. J. Meijer. Interactive Control over a Programmable Computer Network Using a Multi-touch Surface. In: Computational Science - ICCS 2009: 9th International Conference, Baton Rouge, LA, USA, Proceedings, Part II. ISBN 978-3-642-01972-2. Lecture Notes in Computer Science 5545, pp. 719-728.
  Citation Links
• Proceedings
  V. Krzhizhanovskaya and S. Ryaboshuk. Information technologies and software packages for education of specialists in materials science [In Russian]. In: Proceedings of the Third International Conference on Information Technologies in Education, Science and Industry (Serpuhov, Russia): Part I. pp. 285-287.
  Abstract Citation Links
• Article
  Y. Fomekong-Nanfack, M. Postma, and J. A. Kaandorp. Inferring Drosophila gap gene regulatory network: Pattern analysis of simulated gene expression profiles and stability analysis. BMC Research Notes 2, p. 256.
  Abstract Citation Links
• Article
  Y. Fomekong-Nanfack, M. Postma, and J. A. Kaandorp. Inferring Drosophila gap gene regulatory network: A parameter sensitivity and perturbation analysis. BMC Systems Biology 3, p. 94.
  Abstract Citation Links
• Proceedings
  A. Suinesiaputra, P. J. de Koning, E. V. Zudilova-Seinstra, J. H. C. Reiber, and R. J. van der Geest. In vivo validations of 3D tubular NURBS fitting model applied on severe stenotic and high curvature MRA of carotid arteries. In: ESMRMB Congress.
  Citation Links
• PhD Thesis
  V. V. Korkhov. Hierarchical resource management in grid computing. ISBN 9789057761898. Supervised by P. M. A. Sloot and A. S. Z. Belloum.
  Citation Links
• Article
  P. M. A. Sloot, P. V. Coveney, G. Ertaylan, V. Müller, C. A. Boucher, and M. Bubak. HIV decision support: From molecule to man. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 367(1898), pp. 2691-2703.
  Abstract Citation Links
• Article
  A. Bossenbroek, A. Tirado-Ramos, and P. M. A. Sloot. Grid resource allocation by means of option contracts. IEEE Systems Journal 3(1), pp. 49-64.
  Abstract Citation Links
• PhD Thesis
  F. Dijkstra. Framework for path finding in multi-layer transport networks. ISBN 978-90-814160-1-6. Supervised by P. M. A. Sloot and C. T. A. M. de Laat.
  Citation Links
• Article
  M. B. N. Kouwenhoven, A. G. A. Brown, S. P. Goodwin, S. F. Portegies Zwart, and L. Kaper. Exploring the consequences of pairing algorithms for binary stars. Astronomy & Astrophysics 493(3), pp. 979-1016.
  Abstract Citation Links
• Proceedings
  E. V. Zudilova-Seinstra, P. M. A. Sloot, P. J. H. de Koning, A. Suinesiaputra, R. J. van der Geest, and J. H. C. Reiber. Exploring 2D/3D input techniques for medical image analysis. In: International Conference on Information Visualisation, track Biomedical Visualization (MediViz09), Barcelona, Spain. ISBN 9780769537344. pp. 147-152.
  Abstract Citation Links
• Proceedings
  B. W. van Schooten, E. M. A. G. van Dijk, E. V. Zudilova-Seinstra, P. J. H. de Koning, and J. H. C. Reiber. Evaluating visualisation and navigation techniques for interpretation of MRA data. In: GRAPP 2009. ISBN 9789898111678. pp. 405-408.
  Abstract Citation Links
• Proceedings
  B. W. van Schooten, E. M. A. G. van Dijk, E. V. Zudilova-Seinstra, P. J. H. de Koning, and J. H. C. Reiber. Evaluating Visualization and Navigation Techniques for Interpretation of MRA Data. In: International Conference on Computer Graphics Theory and Applications (GRAPP 2009). pp. 405-408.
  Citation
• Proceedings
  T. Bartyński, M. Bubak, T. Gubała, D. Harężlak, M. Kasztelnik, J. Kocot, and P. Nowakowski. Environment for collaborative e-science applications: CGW08 tutorial. In: Cracow'08 Grid Workshop: October 13-15, 2008 Cracow, Poland: proceedings. ISBN 9788361433002. pp. 58-60.
  Citation Links
• Proceedings
  G. S. Shirshov and V. V. Krzhizhanovskaya. Developing a model of processes in a shock tube with ignition of combustible gas mixtures [in Russian]. In: International Conference "38th Science Week". pp. 65-66.
  Citation Links
• Proceedings
  V. A. Zverev, I. S. Kiseleva, and V. V. Krzhizhanovskaya. Developing a model of nickel film growth in a PECVD reactor [in Russian]. In: International Conference "38th Science Week". pp. 59-60.
  Citation Links
• Article
  P. M. A. Sloot. Crisis computing: beslissingsondersteuning in een complexe wereld. Magazine Nationale Veiligheid en Crisisbeheersing 7(8), pp. 62-63.
  Abstract Citation Links
• Book
  M. Bubak, M. Turała, and K. Wiatr. Cracow '08 Grid Workshop, October 13-15, 2008, Cracow, Poland: proceedings. ISBN 9788361433002.
  Citation Links
• Article
  E. Lorenz, A. Caiazzo, and A. G. Hoekstra. Corrected momentum exchange method for lattice Boltzmann simulations of suspension flow. Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 79(3), p. 036705.
  Abstract Citation Links
• Proceedings
  D. A. Ivanov, I. Marinov, Y. E. Gorbachev, A. S. Smirnov, and V. V. Krzhizhanovskaya. Computer Simulation of Laser Annealing of a Nanostructured Surface. In: Proceedings of the ASME IDETC/CIE-2009 conference. ISBN 978-0-7918-3856-3. pp. DETC2009-87087.
  Citation
• Article
  S. Murtaza, A. G. Hoekstra, and P. M. A. Sloot. Compute bound and I/O bound Cellular Automata simulations on FPGA logic. ACM Transactions on Reconfigurable Technology and Systems 1(4), p. 23.
  Abstract Citation Links
• Book
  G. Allen, J. Nabrzyski, E. Seidel, G. D. van Albada, J. Dongarra, and P. M. A. Sloot. Computational Science – ICCS 2009. ISBN 9783642019708, 9783642019739.
  Abstract Citation Links
• Chapter
  J. Kroc and P. M. A. Sloot. Complex systems modeling by cellular automata. In: Encyclopedia of artificial intelligence. ISBN 9781599048499. pp. 353-360.
  Abstract Citation Links
• Article
  A. D. Verkerk, M. M. de Jong, J. K. Rath, M. Brinza, R. E. I. Schropp, W. J. Goedheer, V. V. Krzhizhanovskaya, Y. E. Gorbachev, K. E. Orlov, E. M. Khilkevitch, and A. S. Smirnov. Compensation of decreased ion energy by increased hydrogen dilution in plasma deposition of thin film silicon solar cells at low substrate temperatures. Materials Science and Engineering B-Advanced Functional Solid-State Materials 159-160, pp. 53-56.
  Abstract Citation Links
• Article
  J. B. W. Geerdink and A. G. Hoekstra. Comparing Entropic and Multiple Relaxation Times Lattice Boltzmann Methods for blood flow simulations. International Journal of Modern Physics C 20(5), pp. 721-733.
  Abstract Citation Links
• Proceedings
  V. Krzhizhanovskaya. Challenges and solutions in simulation of plasma discharge in reactive flows. In: EUCASS Aerospace Thematic Workshop on Fundamentals of Aerodynamic-Flow and Combustion Control by Plasmas, Les Houches, France.
  Citation Links
• Article
  J. Cui, J. A. Kaandorp, P. M. A. Sloot, C. M. Lloyd, and M. V. Filatov. Calcium homeostasis and signaling in yeast cells and cardiac myocytes. FEMS Yeast Research 9(8), pp. 1137-1147.
  Abstract Citation Links
• Proceedings
  D. J. W. Evans, A. Caiazzo, J. L. Falcone, J. Hegewald, E. Lorenz, B. Stahl, D. Wang, J. Bernsdorf, B. Chopard, J. Gunn, D. Walker, R. Hose, M. Krafczyk, A. Hoekstra, and P. Lawford. COAST: Modelling Restenosis and Stent Based Therapies. In: International Conference on Advancements of Medicine and Health Care through Technology. ISBN 9783642042928. pp. 319-322.
  Abstract Citation Links
• Article
  A. Caiazzo, J.-L. Falcone, B. Chopard, and A. G. Hoekstra. Asymptotic analysis of Complex Automata models for reaction-diffusion systems. Applied Numerical Mathematics 59(8), pp. 2023-2034.
  Abstract Citation Links
• Proceedings
  W. Rząsa and M. Bubak. Application of Petri nets to evaluation of Grid applications efficiency. In: Cracow '08 Grid Workshop: October 13-15, 2008 Cracow, Poland: proceedings. ISBN 9788361433002. pp. 261-269.
  Citation Links
• Proceedings
  L. Caroprese, P. M. A. Sloot, B. Ó Nualláin, and E. Zumpano. A logical framework for detecting anomalies in drug resistance algorithms. In: Proceedings of IDEAS'09. ISBN 9781605584027. pp. 23-30.
  Abstract Citation Links
• Article
  A. S. Z. Belloum. A grid-enabled workflow management system for e-Science. issue 147: iSGTW international science Grid This Week .
  Citation Links
• Article
  M. Assel, D. van de Vijver, P. Libin, K. Theys, D. Harezlak, B. Ó Nualláin, P. Nowakowski, M. Bubak, A.-M. Vandamme, S. Imbrechts, R. Sangeda, T. Jiang, D. Frentz, and P. Sloot. A collaborative environment allowing clinical investigations on integrated biomedical databases. Studies in Health Technology and Informatics 147, pp. 51-61.
  Abstract Citation Links
• MSc Thesis
  A. Bossenbroek. A Numerical Approach to Bonus-Malus Executive Compensation Plans. Supervised by B. D. Kandhai, D. R. Fokkema, and B. Bosma.
  Citation Links
• Proceedings
  G. Allen, J. Nabrzyski, E. Seidel, G. D. van Albada, J. Dongarra, and P. M. A. Sloot. In: Computational Science - ICCS 2009: 9th International Conference, Baton Rouge, LA, USA, Proceedings, Part I. ISBN 978-3-642-01969-2. Lecture Notes in Computer Science 5544.
  Citation Links

2008

• Article
  A. G. Hoekstra. [Review of: V.V. Tuchin, L.V. Wang (2006) Optical polarization in biomedical applications]. Journal of Quantitative Spectroscopy & Radiative Transfer 109(3), pp. 531-531.
  Citation Links
• Proceedings
  E. V. Zudilova-Seinstra, J. Adriaanse, and A. Berg. Visualizing climate data on a tiled panel display: A user-centered approach. In: IADIS International Conference on Computer Graphics and Visualization 2008. ISBN 9789728924638. pp. 197-202.
  Abstract Citation Links
• Proceedings
  M. Bubak, T. Gubala, M. Malawski, B. Balis, W. Funika, T. Bartynski, E. Ciepiela, D. Harezlak, M. Kasztelnik, J. Kocot, D. Krol, P. Nowakowski, M. Pelczar, J. Wach, M. Assel, and A. Tirado-Ramos. Virtual laboratory for development and execution of biomedical collaborative applications. In: Proceedings of the 21st IEEE international symposium on computer-based medical systems: June 17-19, 2008, Jyväskula, Finland. ISBN 9780769531656. pp. 373-378.
  Abstract Citation Links
• Article
  P. Sloot. ViroLab: From the molecule to the man. eStrategies Projects pp. 53-55.
  Abstract Citation Links
• Article
  P. Sloot, P. Coveney, M. T. Bubak, A.-M. Vandamme, B. Ó Nuallain, D. van de Vijver, and C. Boucher. ViroLab: A collaborative decision support system in viral disease treatment. Reviews in Antiviral Therapy 3, pp. 4-7.
  Abstract Citation Links
• Proceedings
  T. Gubala, B. Baliś, M. Malawski, M. Kasztelnik, P. Nowakowski, M. Assel, D. Harężlak, T. Bartyński, J. Kocot, E. Ciepiela, D. Król, J. Wach, M. Pelczar, W. Funika, and M. Bubak. ViroLab Virtual Laboratory. In: Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings. ISBN 9788391514191. pp. 35-40.
  Citation Links
• Proceedings
  P. M. A. Sloot, A. Tirado-Ramos, G. Ertaylan, B. O Nuallain, D. van de Vijver, C. A. Boucher, and M. Bubak. VIROLAB: A distributed decision support system for viral disease treatment. In: Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings. ISBN 9788391514191. pp. 33-34.
  Citation Links
• Article
  J. L. Guisado, F. Fernández de Vega, F. Jiménez Morales, K. A. Iskra, and P. M. A. Sloot. Using cellular automata for parallel simulation of laser dynamics with dynamic load balancing. International Journal of High Performance Systems Architecture (IJHPSA) 1(4), pp. 251-259.
  Abstract Citation Links
• Proceedings
  K. Rycerz, M. Bubak, and P. M. A. Sloot. Using HLA and Grid for distributed multiscale simulations. In: Parallel Processing and Applied Mathematics. ISBN 9783540681113. pp. 780-787.
  Abstract Citation Links
• Proceedings
  W. Funika, D. Harężlak, D. Król, P. Pęgiel, and M. Bubak. User interfaces of the Virolab Virtual Laboratory. In: Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings. ISBN 9788391514191. pp. 47-52.
  Citation Links
• Proceedings
  T. Bartyński, M. Malawski, T. Gubała, and M. Bubak. Universal Grid client: Grid Operation Invoker. In: Parallel Processing and Applied Mathematics. ISBN 9783540681113. pp. 1068-1077.
  Abstract Citation Links
• Proceedings
  T. Gubała, M. Kasztelnik, M. Malawski, and M. Bubak. Towards a system-level science support. In: Computational Science – ICCS 2008. ISBN 9783540693840. I, pp. 56-65.
  Abstract Citation Links
• Proceedings
  A. Wibisono, Z. Zhao, A. Belloum, and M. Bubak. Towards a Virtual Laboratory for interactive parameter sweep applications on the Grid. In: Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings. ISBN 9788391514191. pp. 266-271.
  Citation Links
• Chapter
  A. G. Hoekstra, S. F. Portegies Zwart, M. T. Bubak, and P. M. A. Sloot. Towards Distributed Petascale Computing. In: Petascale Computing: Algorithms and Applications. ISBN 978-1-58488-909-0. pp. 147-164.
  Citation Links
• Article
  D. J. W. Evans, P. V. Lawford, J. Gunn, D. Walker, D. R. Hose, R. H. Smallwood, B. Chopard, M. Krafczyk, J. Bernsdorf, and A. Hoekstra. The application of multiscale modelling to the process of development and prevention of stenosis in a stented coronary artery. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 366(1879), pp. 3343-3360.
  Abstract Citation Links
• MSc Thesis
  B. Rexhepi. The Volatility Smile Dynamics Implied by Smile-Consistent Option Pricing Models and Empirical Data. Supervised by B. D. Kandhai and G.-Z. Qiu.
  Citation Links
• Proceedings
  M. A. Yurkin, D. de Kanter, and A. G. Hoekstra. Study of light scattering by a granulated coated sphere - a model of granulated blood cells. In: 11th Electromagnetic & Light Scattering Conference: Extended abstracts: 7-12 September 2008, de Havilland Campus, University of Hertfordshire. pp. 299-302.
  Abstract Citation Links
• Article
  P. M. A. Sloot, S. V. Ivanov, A. V. Boukhanovsky, D. A. M. C. van de Vijver, and C. A. B. Boucher. Stochastic simulation of HIV population dynamics through complex network modelling. International Journal of Computer Mathematics 85(8), pp. 1175-1187.
  Abstract Citation Links
• PhD Thesis
  E. Gaburov. Stellar collisions in young star clusters. Supervised by R. A. M. J. Wijers, P. M. A. Sloot, S. F. Portegies Zwart, and O. R. Pols.
  Citation Links
• Article
  S. Harfst, S. Portegies Zwart, and S. McMillan. Status and future of MUSE. Astronomische Nachrichten 329(9-10), pp. 885-891.
  Abstract Citation Links
• Other: misc
  V. V. Krzhizhanovskaya and A. G. Hoekstra. Special Issue on Simulation of Multiphysics Multiscale Systems. International Journal for Multiscale Computational Engineering 6(1).
  Citation Links

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