2024
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ProceedingsTrends in Computational Science. In: Computational Science – ICCS 2024 - 24th International Conference, Proceedings. ISBN 9783031637537. pp. 19-33..
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ArticleTrajectory-based global sensitivity analysis in multiscale models. Scientific Reports 14, 13902..
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ArticleThree Myths in Complexity Science and How to Resolve Them..
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ArticleThe need for systems thinking to advance Alzheimer's disease research. Psychiatry Research 333, 115741..
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ArticleThe impact of cardiovascular diagnostics and treatments on fall risk in older adults. GeroScience 46, pp. 153-169..
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ProceedingsPreface. In: Lecture Notes in Computer Science. 14836 LNCS, pp. v-vi..
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ProceedingsPreface. In: Lecture Notes in Computer Science. 14838 LNCS, pp. v-vi..
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ProceedingsPreface. In: Lecture Notes in Computer Science. 14837 LNCS, pp. v-vi..
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ProceedingsPreface. In: Lecture Notes in Computer Science. 14832 LNCS, pp. v-vi..
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ProceedingsPreface. In: Lecture Notes in Computer Science. 14835 LNCS, pp. v-vi..
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ProceedingsPreface. In: Lecture Notes in Computer Science. 14833 LNCS, pp. v-vi..
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ProceedingsPreface. In: Lecture Notes in Computer Science. 14834 LNCS, pp. v-vi..
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PhD ThesisPlatelet aggregation in complex vessel geometries. ISBN 9789464698121. Supervised by A. G. Hoekstra and G. Závodszky..
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ProceedingsPlasma-Assisted Air Cleaning Decreases COVID-19 Infections in a Primary School. In: Computational Science – ICCS 2024 - 24th International Conference, Proceedings. ISBN 9783031637711. pp. 196-209..
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ArticleHow social rewiring preferences bridge polarized communities. Chaos, Solitons and Fractals 180, 114594..
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ProceedingsHigher Order Reasoning under Intent Uncertainty Reinforces the Hobbesian Trap. In: AAMAS '24. ISBN 9798400704864. p. 1066–1074..
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ArticleFAIR compliant database development for human microbiome data samples. Frontiers in Cellular and Infection Microbiology 14, 1384809..
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ArticleDynamics in and dynamics of networks using DyNSimF. Journal of Computational Science 81, 102376..
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ArticleDigital twins of the Earth with and for humans. Communications earth & environment 5, 463..
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ArticleData-driven reduced-order modelling for blood flow simulations with geometry-informed snapshots. Journal of computational Physics 497, 112639..
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ArticleCriminal organizations exhibit hysteresis, resilience, and robustness by balancing security and efficiency. Scientific Reports 14, 17678..
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ArticleCooperative food bank: a collective insurance regime to govern food insecurity and nitrogen pollution under risk. Environmental Research Letters 19(8), 084057..
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ArticleComputation at the Cutting Edge of Science. Journal of Computational Science 81, 102379..
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ArticleCharacterizing pedestrian contact interaction trajectories to understand spreading risk in human crowds. Journal of Computational Science 81, 102358..
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ChapterCellular Blood Flow Modeling with HemoCell. In: High Performance Computing for Drug Discovery and Biomedicine . ISBN 9781071634493. pp. 351-368..
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ArticleCascades towards noise-induced transitions on networks revealed using information flows. Scientific Reports ..
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ProceedingsArticle Classification with Graph Neural Networks and Multigraphs. In: 2024 Joint International Conference on Computational Linguistics, Language Resources and Evaluation, LREC-COLING 2024 - Main Conference Proceedings. ISBN 9782493814104. pp. 1539-1547..
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ArticleAnti-conformists catalyze societal transitions and facilitate the expression of evolving preferences. PNAS nexus 3(8), pgae302..
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ArticleAlcohol consumption as a socially contagious phenomenon in the Framingham Heart Study social network. Scientific Reports 14, 4499..
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ArticleAdaptive foraging of pollinators fosters gradual tipping under resource competition and rapid environmental change. PLoS Computational Biology 20, e1011762..
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ArticleA data-driven agent-based model of primary school segregation in Amsterdam. Journal of Mathematical Sociology 48(3), pp. 362-392..
2023
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ArticleUsing network analysis to identify leverage points based on causal loop diagrams leads to false inference. Scientific Reports 13(1), 21046..
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ArticleUnitary partitioning and the contextual subspace variational quantum eigensolver. Physical Review Research 5(1), 013095..
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ArticleUnderstanding multimorbidity requires sign-disease networks and higher-order interactions, a perspective. Frontiers in Systems Biology 3, 1155599..
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ProceedingsToxicity in Evolving Twitter Topics. In: Computational Science – ICCS 2023. ISBN 9783031360268. IV, pp. 40-54..
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ArticleTowards evolutionary predictions: Current promises and challenges. Evolutionary Applications 16(1), pp. 3-21..
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ArticleThe relationship between cognitive functioning and psychopathology in patients with psychiatric disorders. Psychological Medicine 53(2), pp. 476-485..
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ArticleThe evolution of forecasting for decision-making in dynamic environments. Collective Intelligence 2(4)..
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ArticleThe dynamics of corruption under an optional external supervision service. Applied Mathematics and Computation 457, 128172..
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ArticleThe computational planet. Journal of Computational Science 72, 102102..
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ArticleTesting hypotheses on the calcification in scleractinian corals using a spatio-temporal model that shows a high degree of robustness. Journal of Theoretical Biology 561(21), 111382..
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ArticleTIES 2.0: A dual-topology open source relative binding free energy builder with web portal. Journal of Chemical Information and Modeling 63(3), pp. 718-724..
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ArticleStructure and dynamics of an archetypal DNA nanoarchitecture revealed via cryo-EM and molecular dynamics simulations. Nature Communications 14, 3630..
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ArticleSimulating the multicausality of Alzheimer's disease with system dynamics. Alzheimer's & Dementia 19(6), pp. 2633-2654..
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ProceedingsSimulating Initial Steps of Platelet Aggregate Formation in a Cellular Blood Flow Environment. In: Computational Science – ICCS 2023. ISBN 9783031360244. III, pp. 323-336..
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ArticleReduced Plasticity in Coupling Strength in the Aging SCN Clock as Revealed by Kuramoto Modeling. Journal of biological rhythms 38(5), pp. 461-475..
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ArticlePromises and pitfalls of computational modelling for insurgency conflicts. The Journal of Defense Modeling and Simulation: Applications, Methodology, Technology 20(3), pp. 333-350..
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ProceedingsProfessional and 21st Century Skills for Data Driven Digital Economy. In: 2023 IEEE Global Engineering Education Conference (EDUCON). ISBN 9798350399431. pp. 847-854..
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ProceedingsPreface. In: Computational Science – ICCS 2023. ISBN 9783031359958. I, pp. v-vi..
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ProceedingsPreface. In: Computational Science – ICCS 2023. ISBN 9783031360213. II, pp. v-vi..
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ArticlePreface. Lecture Notes in Computer Science 14077 LNCS, pp. v-vi..
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ArticlePeriodic orbits in chaotic systems simulated at low precision. Scientific Reports 13, 11410..
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ArticleOptimization of institutional incentives for cooperation in structured populations. Journal of the Royal Society Interface 20(199), 20220653..
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ArticleMulti-unit building address geocoding: An approach without indoor location reference data. Transactions in GIS 27(1), pp. 57-83..
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ArticleMeasure cross-sectoral structural similarities from financial networks. Scientific Reports 13, 7124..
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ProceedingsManifold Analysis for High-Dimensional Socio-Environmental Surveys. In: Computational Science – ICCS 2023. ISBN 9783031360275. IV, pp. 25-39..
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ArticleLong Time Scale Ensemble Methods in Molecular Dynamics: Ligand-Protein Interactions and Allostery in SARS-CoV-2 Targets. Journal of Chemical Theory and Computation 19(11), pp. 3359-3378..
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ArticleLarge-scale molecular dynamics elucidates the mechanics of reinforcement in graphene-based composites. Advanced materials 35(35), e2302237..
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ArticleInverse uncertainty quantification of a mechanical model of arterial tissue with surrogate modelling. Reliability Engineering & System Safety 238, 109393..
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ArticleIntrinsic fluctuations of reinforcement learning promote cooperation. Scientific Reports 13, 1309..
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ArticleInitial platelet aggregation in the complex shear environment of a punctured vessel model. Physics of Fluids 35(7), 071904..
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ProceedingsImproving the Resiliency of Decentralized Crowdsourced Blockchain Oracles. In: Computational Science – ICCS 2023. ISBN 9783031359958. I, pp. 3-17..
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ArticleImproving Article Classification with Edge-Heterogeneous Graph Neural Networks..
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ArticleImage-based flow simulation of platelet aggregates under different shear rates. PLoS Computational Biology 19(7), e1010965..
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ArticleHigh resolution simulation of basilar artery infarct and flow within the circle of Willis. Scientific Reports 13, 21665..
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ProceedingsGlobal Sensitivity Analysis Using Polynomial Chaos Expansion on the Grassmann Manifold. In: Computational Science – ICCS 2023. ISBN 9783031360305. V, pp. 583-597..
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ArticleFabSim3: An automation toolkit for verified simulations using high performance computing. Computer Physics Communications 283, 108596..
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ArticleExploring the potential impact of multi-factor precision interventions in Alzheimer's disease with system dynamics. Journal of Biomedical Informatics 145, 104462..
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ArticleEnsemble-Based Approaches Ensure Reliability and Reproducibility. Journal of Chemical Information and Modeling 63(22), pp. 6959-6963..
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ProceedingsEmpowering Machine Learning Development with Service-Oriented Computing Principles. In: Service-Oriented Computing - 17th Symposium and Summer School, SummerSOC 2023, Revised Selected Papers. ISBN 9783031457289. pp. 24-44..
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ArticleEmbracing complexity in sepsis. Critical Care 27, 102..
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ArticleDevelopment and performance of a HemeLB GPU code for human-scale blood flow simulation. Computer Physics Communications 282(108548), 108548..
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ProceedingsData Integration Landscapes. In: Computational Science – ICCS 2023. ISBN 9783031359958. I, pp. 494-508..
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ArticleCooperative behaviour at public electric vehicle charging stations. Travel Behaviour and Society 32, 100572..
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PhD ThesisComputational models of emergent organisation in conflict environments. ISBN 9789464731811. Supervised by P. M. A. Sloot, T. M. van Engers, and A. I. Barros..
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ArticleComparison of Equilibrium and Nonequilibrium Approaches for Relative Binding Free Energy Predictions. Journal of Chemical Theory and Computation 19(21), pp. 7846-7860..
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ProceedingsCharacterization of Pedestrian Contact Interaction Trajectories. In: Computational Science – ICCS 2023. ISBN 9783031359958. I, pp. 18-32..
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ArticleCapitalized value of evolving flood risks discount and nature-based solution premiums on property prices. Ecological Economics 205, 107682..
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ProceedingsBuilding a Fine-Grained Analytical Performance Model for Complex Scientific Simulations. In: Parallel Processing and Applied Mathematics. ISBN 9783031304422. I, pp. 183-196..
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ArticleBranching archaeocyaths as ecosystem engineers during the Cambrian radiation. Geobiology 21(1), pp. 66-85..
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ArticleBenchmarking noisy intermediate scale quantum error mitigation strategies for ground state preparation of the HCl molecule. Physical Review Research 5(4), 043054..
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ArticleAuthor Correction: A simplified mesoscale 3D model for characterizing fibrinolysis under flow conditions. Scientific Reports 13, 20369..
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ArticleApplying systems thinking to unravel the mechanisms underlying orthostatic hypotension related fall risk. GeroScience 45(4), pp. 2743-2755..
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ArticleAn approach for analysing the impact of data integration on complex network diffusion models. Journal of complex networks 11(4), cnad025..
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ArticleA stabilizer framework for the Contextual Subspace Variational Quantum Eigensolver and the noncontextual projection ansatz. Journal of Chemical Theory and Computation 19(3), pp. 808-821..
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ArticleA simplified mesoscale 3D model for characterizing fibrinolysis under flow conditions. Scientific Reports 13, 13681..
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ArticleA network analysis of depressive symptoms and metabolomics. Psychological Medicine 53(15), pp. 7385-7394..
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ArticleA data-driven computational model for obesity-driven diabetes onset and remission through weight loss. iScience 26(11), 108324..
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ArticleA Semi-Static Replication Method for Bermudan Swaptions under an Affine Multi-Factor Model. Risks 11(10), 168..
2022
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ArticleUnderstanding the coevolution of mask wearing and epidemics. Proceedings of the National Academy of Sciences of the United States of America 119(26), e2123355119..
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ArticleUnderstanding Complexity in Charging Infrastructure through the Lens of Social Supply–Demand Systems. World Electric Vehicle Journal 13(3), 44..
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ArticleUncertainty quantification of a three-dimensional in-stent restenosis model with surrogate modelling. Journal of the Royal Society Interface 19(187), 20210864..
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ArticleTraumatic vessel injuries initiating hemostasis generate high shear conditions. Blood Advances 6(16), pp. 4834-4846..
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ProceedingsTowards adaptive quality-aware Complex Event Processing in the Internet of Things. In: 2022 18th International Conference on Mobility, Sensing and Networking : MSN 2022. ISBN 9781665464574. pp. 571-575..
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ArticleThe effect of stiffened diabetic red blood cells on wall shear stress in a reconstructed 3D microaneurysm. Computer methods in biomechanics & biomedical engineering 25(15), pp. 1691-1709..
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ArticleThe Impact of Stochastic Volatility on Initial Margin and MVA for Interest Rate Derivatives. Applied Mathematical Finance 29(2), pp. 141-179..
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ArticleThe Future of Burn Care From a Complexity Science Perspective. Journal of Burn Care & Research 43(6), pp. 1312-1321..
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PhD ThesisSurrogate modelling and uncertainty quantification for multiscale simulation. Supervised by A. G. Hoekstra and V. Krzhizhanovskaya..
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ReportStrategies of Change..
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ArticleSociocultural determinants of global mask-wearing behavior. Proceedings of the National Academy of Sciences of the United States of America 119(41), e2213525119..