Publications of the CSL group

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2008

• PhD Thesis
  J. M. Bernsdorf. Simulation of complex flows and multi-physics with the Lattice-Boltzmann method. Supervised by P. M. A. Sloot and A. G. Hoekstra.
  Citation Links
• Proceedings
  V. V. Krzhizhanovskaya and A. G. Hoekstra. Simulation of Multiphysics Multiscale Systems, 5th International Workshop. In: Computational Science – ICCS 2008. ISBN 9783540693871. II, pp. 165-166.
  Abstract Citation Links
• Article
  J. Cui, J. A. Kaandorp, and C. M. Lloyd. Simulating in vitro transcriptional response of zinc homeostasis system in Escherichia coli. BMC Systems Biology 2, 89.
  Abstract Citation Links
• Proceedings
  J. Cui and J. A. Kaandorp. Simulating complex calcium-calcineurin signaling network. In: Computational Science – ICCS 2008. ISBN 9783540693895. III, pp. 110-119.
  Abstract Citation Links
• Proceedings
  D. Groen, S. Portegies Zwart, S. McMillan, and J. Makino. Simulating N-body systems on the grid using dedicated hardware. In: Computational Science – ICCS 2008. ISBN 9783540693840. I, pp. 86-95.
  Abstract Citation Links
• Article
  E. Zudilova-Seinstra, N. Yang, L. Axner, A. Wibisono, and D. Vasunin. Service-oriented visualization applied to medical data analysis. Service Oriented Computing and Applications 2(4), pp. 187-201.
  Abstract Citation Links
• Proceedings
  A. Tirado-Ramos and Q. Luo. Second Workshop on Teaching Computational Science WTCS 2008. In: Computational Science – ICCS 2008. ISBN 9783540693871. II, pp. 657-658.
  Abstract Citation Links
• Proceedings
  A. Caiazzo, J. L. Falcone, B. Chopard, and A. G. Hoekstra. Scale-splitting error in complex automata models for reaction-diffusion systems. In: Computational Science – ICCS 2008. ISBN 9783540693871. II, pp. 291-300.
  Abstract Citation Links
• Article
  M. Wiens, S. I. Belikov, O. V. Kaluzhnaya, T. Adell, H. C. Schröder, S. Perovic-Ottstadt, J. A. Kaandorp, and W. E. G. Müller. Regional and modular expression of morphogenetic factors in the demosponge Lubomirskia baicalensis. Micron 39(4), pp. 447-460.
  Abstract Citation Links
• Proceedings
  S. F. Portegies Zwart and H.-C. Chen. Reconstructing the initial relaxation time of young star clusters in the Large Magellanic Cloud. In: Mass Loss from Stars and the Evolution of Stellar Clusters. ISBN 9781583816455. pp. 329-336.
  Abstract Citation Links
• Proceedings
  B. Baliś, M. Bubak, and J. Wach. Provenance tracking in the ViroLab Virtual Laboratory. In: Parallel Processing and Applied Mathematics. ISBN 9783540681113. pp. 381-390.
  Abstract Citation Links
• Proceedings
  B. Balis, M. Bubak, M. Pelczar, and J. Wach. Provenance tracking and querying in the ViroLab Virtual Laboratory. In: CCGRID 2008. ISBN 9780769531564. pp. 675-680.
  Abstract Citation Links
• Proceedings
  B. Balis, M. Bubak, M. Pelczar, and J. Wach. Provenance tracking and querying in ViroLab. In: Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings. ISBN 9788391514191. pp. 71-76.
  Citation Links
• Proceedings
  B. Baliś, M. Bubak, M. Pelczar, and J. Wach. Provenance querying for end-users: A drug resistance case study. In: Computational Science – ICCS 2008. ISBN 9783540693895. III, pp. 80-89.
  Abstract Citation Links
• Proceedings
  K. Rycerz, M. Bubak, P. Sloot, and V. Getov. Problem solving environment for distributed interactive applications. In: Achievements in European research on grid systems: CoreGRID Integration Workshop 2006 (selected papers), October 19-20, Krakow, Poland. ISBN 9780387728117. pp. 55-66.
  Abstract Citation Links
• Proceedings
  R. M. Badia, R. Sirvent, M. T. Bubak, W. Funika, and P. Machner. Performance monitoring of Grid superscalar: visualization modes. In: CoreGRID integration workshop 2008 -- Integrated Research in Grid Computing: April 24, Hersonissos, Crete, Greece. ISBN 978-960-524-260-2. pp. 266-274.
  Citation
• Proceedings
  R. M. Badia, R. Sirvent, M. Bubak, W. Funika, and P. Machner. Performance monitoring of Grid superscalar with OCM-G/G-PM: visualization modes. In: Integrated research in grid computing. ISBN 9789605242602. pp. 265-274.
  Citation Links
• Proceedings
  R. M. Badia, R. Sirvent, M. Bubak, W. Funika, and P. Machner. Performance monitoring of GRID superscalar with OCM-G/G-PM: Integration issues. In: Achievements in European reseach on Grid systems: CoreGRID Integration Workshop 2006 (selected papers): October 19-20, Krakow, Poland. ISBN 9780387728117. pp. 193-205.
  Abstract Citation Links
• Article
  L. Axner, J. Bernsdorf, T. Zeiser, P. Lammers, J. Linxweiler, and A. G. Hoekstra. Performance evaluation of a parallel sparse lattice Boltzmann solver. Journal of computational Physics 227(10), pp. 4895-4911.
  Abstract Citation Links
• Proceedings
  V. V. Krzhizhanovskaya, V. V. Korkhov, M. A. Zatevakhin, and Y. E. Gorbachev. Parallel distributed computing in modeling of the nanomaterials production technologies. In: Proceedings of the International Conference on Parallel Computing Technologies (PaVT'2008), St. Petersburg, Russia. ISBN 9785696037202. pp. 585-590.
  Abstract Citation Links
• Proceedings
  J. L. Guisado, F. Fernández de Vega, F. Jiménez Morales, K. A. Iskra, and P. M. A. Sloot. Parallel Cellular Automata-based simulation of laser dynamics using dynamic load balancing. In: First International Workshop on Parallel Architectures and Bioinspired Algorithms. ISBN 9788469165126. pp. 49-55.
  Abstract Citation Links
• Article
  M. B. N. Kouwenhoven, A. G. A. Brown, S. P. Goodwin, S. F. Portegies Zwart, and L. Kaper. Pairing mechanisms for binary stars. Astronomische Nachrichten 329(9-10), pp. 984-987.
  Abstract Citation Links
• Proceedings
  M. Malawski, J. Kocot, E. Ciepiela, and M. Bubak. Optimization of application execution in the ViroLab Virtual Laboratory. In: Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings. ISBN 9788391514191. pp. 65-70.
  Abstract Citation Links
• Report
  M. Malawski, J. Kocot, I. Ryszka, M. Bubak, M. Wieczorek, and T. Fahringer. Optimization of application execution in the GridSpace environment.
  Abstract Citation Links
• Proceedings
  M. Malawski, J. Kocot, I. Ryszka, M. Bubak, and M. Wieczorek. Optimization of application execution in the GridSpace environment. In: Integrated research in grid computing. ISBN 9789605242602. pp. 395-405.
  Citation Links
• Article
  N. T. Faber, C. M. Boily, and S. F. Portegies Zwart. On time-dependent orbital complexity in gravitational N-body simulations. Monthly Notices of the Royal Astronomical Society 386(1), pp. 425-439.
  Abstract Citation Links
• Article
  E. Gaburov, A. Gualandris, and S. Portegies Zwart. On the onset of runaway stellar collisions in dense star clusters: I. Dynamics of the first collision. Monthly Notices of the Royal Astronomical Society 384(1), pp. 376-385.
  Abstract Citation Links
• Article
  L. R. Yungelson, E. P. J. van den Heuvel, J. S. Vink, S. F. Portegies Zwart, and A. de Koter. On the evolution and fate of super-massive stars. Astronomy & Astrophysics 477(1), pp. 223-237.
  Abstract Citation Links
• Proceedings
  B. Chopard, J.-L. Falcone, R. Razakanirina, A. Hoekstra, and A. Caiazzo. On the collision-propagation and gather-update formulations of a cellular automata rule. In: Cellular Automata. ISBN 9783540799924. pp. 144-151.
  Abstract Citation Links
• Proceedings
  B. Chopard, J.-L. Falcone, R. Razakarinina, A. G. Hoekstra, and A. Caiazzo. On the collision-propagation and gather-update formulations of a Cellular Automata rule. In: Cellular Automata, 8th International Conference on Cellular Automata for Reseach and Industry, ACRI 2008. ISBN 978-3-540-79991-7. Lecture Notes in Computer Science 5191, pp. 144-151.
  Citation
• Proceedings
  W. Funika, M. Zientarski, R. M. Badia, J. Labarta, and M. Bubak. OCM2PRV: performance visualization of Grid applications based on OCM-G and Paraver. In: Integrated research in grid computing. ISBN 9789605242602. pp. 87-98.
  Citation Links
• Proceedings
  D. J. W. Evans, A. G. Hoekstra, J. Gunn, D. Walker, D. R. Hose, R. H. Smallwood, B. Chopard, M. Krafczyk, J. M. Bernsdorf, and P. V. Lawford. Multiscale Modelling: Application of the Complex Automata Simulation Technique (COAST). In: Proceedings of the European Biomechanics Society conference 2008.
  Citation
• Article
  D. J. W. Evans, A. Hoekstra, J. Gunn, D. Walker, D. R. Hose, R. H. Smallwood, B. Chopard, M. Krafczyk, J. Bernsdorf, and P. V. Lawford. Multiscale Modelling: Application of the Complex Automata Simulation Technique (COAST). Journal of Biomechanics 41(S1), p. 482.
  Citation Links
• MSc Thesis
  L. Y. L. Muller. Multi-touch displays: design, applications and performance evaluation. Supervised by R. G. Belleman.
  Citation Links
• Article
  P. Sloot, P. Coveney, M. T. Bubak, A.-M. Vandamme, B. Ó Nualláin, D. van de Vijver, and C. Boucher. Multi-science decision support for HIV drug resistance treatment. Studies in Health Technology and Informatics 138, pp. 188-198.
  Abstract Citation Links
• Proceedings
  A. G. Hoekstra, J.-L. Falcone, A. Caiazzo, and B. Chopard. Multi-scale modeling with cellular automata: The complex automata approach. In: Cellular Automata. ISBN 9783540799924. pp. 192-199.
  Abstract Citation Links
• Article
  B. Balis, M. Bubak, and B. Łabno. Monitoring of Grid scientific workflows. Scientific Programming 16(2-3), pp. 205-216.
  Abstract Citation Links
• Article
  J. A. Kaandorp, J. G. Blom, J. Verhoef, M. Filatov, M. Postma, and W. E. G. Müller. Modelling genetic regulation of growth and form in a branching sponge. Proceedings of the Royal Society B-Biological Sciences 275(1651), pp. 2569-2575.
  Abstract Citation Links
• MSc Thesis
  R. Quax. Modeling and Simulating the Propagation of Infectious Diseases Using Complex Networks. Supervised by David Bader.
  Citation Links
• Article
  E. Gaburov, J. C. jr. Lombardi, and S. Portegies Zwart. Mixing in massive stellar mergers. Monthly Notices of the Royal Astronomical Society. Letters 383(1), pp. L5-L9.
  Abstract Citation Links
• MSc Thesis
  A. Sottoriva. Mathematical Modeling of Tumour Growth and Invasion Using a Hybrid Cellular Automaton. Supervised by P. M. A. Sloot and L. Vermeulen.
  Citation
• Article
  D. Y. Orlova, M. A. Yurkin, A. G. Hoekstra, and V. P. Maltsev. Light scattering by neutrophils: Model, simulation, and experiment. Journal of Biomedical Optics 13(5), p. 054057.
  Abstract Citation Links
• Article
  B. Baliś, M. Bubak, and M. Wegiel. LGF: A flexible framework for exposing legacy codes as services. Future Generation Computer Systems 24(7), pp. 711-719.
  Abstract Citation Links
• Proceedings
  T. Bartyński, M. Malawski, and M. Bubak. Invocation of Grid operations in the ViroLab Virtual Laboratory. In: Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings. ISBN 9788391514191. pp. 59-64.
  Abstract Citation Links
• Proceedings
  T. Szepieniec and M. Bubak. Investigation of the DAG eligible jobs maximization algorithm in a grid. In: Grid 2008: proceedings of the 2008 9th IEEE/ACM International Conference on Grid Computing: September 29th-October 1st, 2008, Tsukuba, Japan. ISBN 9781424425785. pp. 340-345.
  Abstract Citation Links
• Proceedings
  A. Belloum, Z. Zhao, and M. Bubak. International Workshop on Applications of Workflows in Computational Science (AWCS 08). In: Computational Science – ICCS 2008. ISBN 9783540693895. III, pp. 459-462.
  Abstract Citation Links
• Proceedings
  M. Assel, P. Nowakowski, and M. Bubak. Integrating and accessing medical data resources within the ViroLab Virtual Laboratory. In: Computational Science – ICCS 2008. ISBN 9783540693895. III, pp. 90-99.
  Abstract Citation Links
• Article
  V. V. Gvaramadze, A. Gualandris, and S. Portegies Zwart. Hyperfast pulsars as the remnants of massive stars ejected from young star clusters. Monthly Notices of the Royal Astronomical Society 385(2), pp. 929-938.
  Abstract Citation Links
• Proceedings
  M. Malawski, T. Gubała, M. Kasztelnik, T. Bartynski, and M. Bubak. High-level scripting approach for building component-based applications on the Grid. In: Making grids work: Proceedings of the CoreGRID Workshop on Programming Models, Grid and P2P System Architecture, Grid Systems, Tools and Environments, 12-13 June 2007, Heraklion, Crete, Greece. ISBN 9780387784472. pp. 309-321.
  Abstract Citation Links
• Article
  R. G. Belleman, J. Bédorf, and S. F. Portegies Zwart. High performance direct gravitational N-body simulations on graphics processing units II: An implementation in CUDA. New Astronomy 13(2), pp. 103-112.
  Abstract Citation Links
• Article
  J. A. van Meel, A. Arnold, D. Frenkel, S. F. Portegies Zwart, and R. G. Belleman. Harvesting graphics power for MD simulations. Molecular Simulation 34(3), pp. 259-266.
  Abstract Citation Links
• Proceedings
  K. Rycerz, M. Bubak, and P. M. A. Sloot. HLA component model on the example of multiscale simulation. In: Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings. ISBN 9788391514191. pp. 272-275.
  Citation Links
• Report
  K. Rycerz, M. Bubak, P. M. A. Sloot, and V. Getov. HLA component based environment for distributed multiscale simulations.
  Abstract Citation Links
• Proceedings
  K. Rycerz, M. Bubak, and P. M. A. Sloot. HLA component based environment for distributed multiscale simulations. In: From grids to service and pervasive computing. ISBN 9780387094540. pp. 229-239.
  Abstract Citation Links
• Article
  H.-C. Huang, A. Konagaya, V. Lanza, and P. M. A. Sloot. Guest Editorial Introduction to the Special Section on BioGrid: Biomedical Computations on the Grid. IEEE Transactions on Information Technology in Biomedicine 12(2), pp. 133-137.
  Citation Links
• Chapter
  A. Tirado-Ramos, P. M. A. Sloot, and M. Bubak. Grid­based interactive decision support in biomedicine. In: Grid computing for bioinformatics and computational biology. ISBN 9780471784098. pp. 225-246.
  Citation Links
• Proceedings
  E. Ciepiela, J. Kocot, T. Gubala, M. Malawski, M. Kasztelnik, and M. Bubak. GridSpace Engine of the ViroLab Virtual Laboratory. In: Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings. ISBN 9788391514191. pp. 53-58.
  Abstract Citation Links
• Proceedings
  J. K. Rath, A. D. Verkerk, M. Brinza, R. E. I. Schropp, W. J. Goedheer, V. V. Krzhizhanovskaya, Y. E. Gorbachev, K. E. Orlov, E. M. Khilkevitch, and A. S. Smirnov. Gas phase considerations for the deposition of thin film silicon solar cells by VHF-PECVD at low substrate temperatures. In: Proceedings of the 33rd IEEE Photovoltaic Specialists Conference, San Diego, California. ISBN 9781424416400.
  Abstract Citation Links
• Proceedings
  J. K. Rath, A. Verkerk, M. Brinza, R. E. I. Schropp, W. J. Goedheer, V. V. Krzhizhanovskaya, Y. E. Gorbachev, K. E. Orlov, E. M. Khilkevitch, and A. S. Smirnov. Gas phase considerations for the deposition of thin film silicon cells by VHF-PECVD at low substrate temperatures. In: Proceedings of 33rd IEEE Photovoltaic Specialists Conference.
  Citation
• Proceedings
  S. Murtaza, A. G. Hoekstra, and P. M. A. Sloot. Floating point based Cellular Automata simulations using a dual FPGA-enabled system. In: 2008 Second International Workshop on High-Performance Reconfigurable Computing Technology and Applications (HPRCTA): proceedings: held in conjunction with SC 08, Austin, TX, November 17, 2008. ISBN 9781424428267.
  Abstract Citation Links
• Article
  J. A. Kaandorp. Exploring theoretical morphospaces [Review of: G.R. McGhee (2006) The geometry of evolution: adaptive landscapes and theoretical morphospaces]. BioScience 58(3), pp. 271-272.
  Citation Links
• Other: misc
  J. A. Kaandorp. Exploring Theoretical Morphospaces, Book review: The Geometry of Evolution: Adaptive Landscapes and Theoretical Morphospaces. George R. McGhee. BioScience 58, pp. 271-273.
  Citation
• Article
  A. Gualandris, S. Harfst, D. Merritt, and S. Mikkola. Evolution of stellar orbits in the galactic centre. Astronomische Nachrichten 329(9-10), pp. 1008-1011.
  Abstract Citation Links
• Proceedings
  T. Szepieniec and M. Bubak. Evaluation of eligible jobs maximization algorithm for DAG scheduling in grids. In: Computational Science – ICCS 2008. ISBN 9783540693840. I, pp. 254-263.
  Abstract Citation Links
• Article
  A. V. Chernyshev, P. A. Tarasov, K. A. Semianov, V. M. Nekrasov, A. G. Hoekstra, and V. P. Maltsev. Erythrocyte lysis in isotonic solution of ammonium chloride: Theoretical modelling and experimental verification. Journal of Theoretical Biology 251(1), pp. 93-107.
  Abstract Citation Links
• Proceedings
  A. Caiazzo, J. L. Falcone, B. Chopard, and A. G. Hoekstra. Error investigations in complex automata models for reaction-diffusion systems. In: Cellular Automata. ISBN 9783540799924. pp. 260-267.
  Abstract Citation Links
• Proceedings
  W. Funika, D. Harężlak, D. Król, and M. Bubak. Environment for collaborative development and execution of Virtual Laboratory applications. In: Computational Science – ICCS 2008. ISBN 9783540693895. III, pp. 446-455.
  Abstract Citation Links
• MSc Thesis
  J. B. W. Geerdink. Entropic and multiple relaxation time lattice Boltzmann methods compared for time harmonic flows. Supervised by A. G. Hoekstra.
  Citation Links
• Article
  B. Ó Nualláin, D. van de Vijver, C. Boucher, A. Tirado Ramos, and P. Sloot. Enhanced decision support for HIV drug resistance interpretation. Reviews in Antiviral Therapy 2008-2.
  Citation Links
• Proceedings
  B. Ó Nualláin, D. A. M. C. van de Vijver, C. A. B. Boucher, A. Tirado Ramos, and P. M. A. Sloot. Enhanced Decision Support for HIV Drug Resistance Interpretation. In: Proceedings of the 6th European HIV Drug Resistance Workshop.
  Citation Links
• Article
  S. L. Moll, R. de Grijs, P. Anders, P. A. Crowther, S. S. Larsen, L. J. Smith, and S. F. Portegies Zwart. Dynamical mass of a star cluster in M 83: A test of fibre-fed multi-object spectroscopy. Astronomy & Astrophysics 490(1), pp. 125-133.
  Abstract Citation Links
• Article
  Y. Demchenko, O. Mulmo, L. Gommans, C. de Laat, and A. Wan. Dynamic security context management in Grid-based applications. Future Generation Computer Systems 24(5), pp. 434-441.
  Abstract Citation Links
• Proceedings
  K. Rycerz, M. Bubak, and P. M. A. Sloot. Dynamic interactions in HLA component model for multiscale simulations. In: Computational Science – ICCS 2008. ISBN 9783540693871. II, pp. 217-226.
  Abstract Citation Links
• Proceedings
  K. J. Rycerz, P. M. A. Sloot, and M. T. Bubak. Dynamic Interactions in HLA Component Model for Multiscale Simulations. In: Computational Science - ICCS 2008: 8th International Conference, Krakow, Poland, Proceedings, Part II. ISBN 978-3-540-69386-4. Lecture Notes in Computer Science 5102, pp. 217-226.
  Citation Links
• Article
  D. Groen, S. Portegies Zwart, S. McMillan, and J. Makino. Distributed N-body simulation on the grid using dedicated hardware. New Astronomy 13(5), pp. 348-358.
  Abstract Citation Links
• Proceedings
  M. Kasztelnik, T. Gubała, M. Malawski, and M. Bubak. Development and execution of collaborative application on the ViroLab virtual laboratory. In: Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings. ISBN 9788391514191. pp. 41-46.
  Abstract Citation Links
• Book
  M. Bubak, M. Turała, and K. Wiatr. Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings. ISBN 9788391514191.
  Citation Links
• Book
  M. Bubak, G. D. van Albada, J. Dongarra, and P. M. A. Sloot. Computational Science – ICCS 2008. ISBN 9783540693895. III.
  Abstract Citation Links
• Book
  M. Bubak, G. D. van Albada, J. Dongarra, and P. M. A. Sloot. Computational Science – ICCS 2008. ISBN 9783540693840. I.
  Abstract Citation Links
• Book
  M. Bubak, G. D. van Albada, J. Dongarra, and P. M. A. Sloot. Computational Science – ICCS 2008. ISBN 9783540693871. II.
  Abstract Citation Links
• Article
  C. H. Liu, A. K. Satoh, M. Postma, J. Huang, D. F. Ready, and R. C. Hardie. Ca2+-dependent metarhodopsin inactivation mediated by calmodulin and NINAC myosin III. Neuron 59(5), pp. 778-789.
  Abstract Citation Links
• Other: misc
  J. A. Kaandorp. Book review: P. Pelce, New visions on growth and form: fingering growth, dendrites, and flames. Mathematical Biosciences in press.
  Citation
• Other: misc
  A. G. Hoekstra. Book review: Optical Polarization in Biomedical Applications, V.V. Tuchin, L.V. Wang, D.A. Zimnyakov. Journal of Quantitative Spectroscopy \& Radiative Transfer 109, pp. 531-531.
  Citation
• Article
  X. Wang, A. Boreiko, U. Schloßmacher, D. Brandt, H. C. Schröder, J. Li, J. A. Kaandorp, H. Götz, H. Duschner, and W. E. G. Müller. Axial growth of hexactinellid spicules: Formation of cone-like structural units in the giant basal spicules of the hexactinellid Monorhaphis. Journal of Structural Biology 164(3), pp. 270-280.
  Abstract Citation Links
• Proceedings
  M. A. Yurkin, M. Min, and A. G. Hoekstra. Application of the discrete dipole approximation to extreme refractive indices: Filtered coupled dipoles revived. In: 11th Electromagnetic & Light Scattering Conference: Extended abstracts: 7-12 September 2008, de Havilland Campus, University of Hertfordshire. pp. 109-112.
  Abstract Citation Links
• Proceedings
  M. Bubak, D. Harezlak, P. Nowakowski, T. Gubala, and M. Malawski. Appea: a framework for the design and development of business applications on the Grid. In: Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings. ISBN 9788391514191. pp. 220-225.
  Citation Links
• Proceedings
  B. Baliś and M. Bubak. An ontology model for execution records of Grid scientific applications. In: Proceedings of the Fourth International Conference on Semantics, Knowledge and Grid: December 3-5, 2008, Beijing, China. ISBN 9780769534015. pp. 34-41.
  Abstract Citation Links
• Proceedings
  B. Kowalewski, M. Bubak, and B. Baliś. An event-based approach to reducing coupling in large-scale applications. In: Computational Science – ICCS 2008. ISBN 9783540693895. III, pp. 358-367.
  Abstract Citation Links
• Proceedings
  J. Hegewald, M. Krafczyk, J. Tölke, A. Hoekstra, and B. Chopard. An agent-based coupling platform for complex automata. In: Computational Science – ICCS 2008. ISBN 9783540693871. II, pp. 227-233.
  Abstract Citation Links
• Book
  S. Gorlatch, M. Bubak, and T. Priol. Achievements in European research on Grid systems: CoreGRID Integration Workshop 2006 (selected papers), October 19-20, Krakow, Poland. ISBN 9780387728117.
  Citation Links
• PhD Thesis
  V. V. Krzhizhanovskaya. A virtual reactor for simulation of plasma enhanced chemical vapor deposition. ISBN 9789090231662. Supervised by P. M. A. Sloot and Y. E. Gorbachev.
  Citation Links
• Proceedings
  M. Malawski, T. Bartyński, and M. Bubak. A tool for building collaborative applications by invocation of Grid Operations. In: Computational Science – ICCS 2008. ISBN 9783540693895. III, pp. 243-252.
  Abstract Citation Links
• MSc Thesis
  D. M. Chu. A survey of classical simulation methods for quantum computation. Supervised by H. Buhrman and R. de Wolf.
  Citation Links
• Article
  S. Portegies Zwart, S. McMillan, D. Groen, A. Gualandris, M. Sipior, and W. Vermin. A parallel gravitational N-body kernel. New Astronomy 13(5), pp. 285-295.
  Abstract Citation Links
• Proceedings
  S. Portegies Zwart, S. McMillan, B. Ó Nualláin, D. Heggie, J. Lombardi, P. Hut, S. Banerjee, H. Belkus, T. Fragos, J. Fregeau, M. Fuji, E. Gaburov, E. Glebbeek, D. Groen, S. Harfst, R. Izzard, M. Jurić, S. Justham, P. Teuben, J. van Bever, O. Yaron, and M. Zemp. A multiphysics and multiscale software environment for modeling astrophysical systems. In: Computational Science – ICCS 2008. ISBN 9783540693871. II, pp. 207-216.
  Abstract Citation Links
• Article
  Z. Guo, P. M. A. Sloot, and J. C. Tay. A hybrid agent-based approach for modeling microbiological systems. Journal of Theoretical Biology 255(2), pp. 163-175.
  Abstract Citation Links
• Article
  S. Harfst, A. Gualandris, D. Merritt, and S. Mikkola. A hybrid N-body code incorporating algorithmic regularization and post-Newtonian forces. Monthly Notices of the Royal Astronomical Society 389(1), pp. 2-12.
  Abstract Citation Links
• Article
  V. V. Korkhov, V. V. Krzhizhanovskaya, and P. M. A. Sloot. A grid-based virtual reactor: Parallel performance and adaptive load balancing. Journal of Parallel and Distributed Computing 68(5), pp. 596-608.
  Abstract Citation Links
• Proceedings
  A. Wibisono, Z. Zhao, A. Belloum, and M. Bubak. A framework for interactive parameter sweep applications. In: Computational Science – ICCS 2008. ISBN 9783540693895. III, pp. 481-490.
  Abstract Citation Links
• MSc Thesis
  M. V. Filatov. A compression-based group similarity measure with applications in phylogeny. Automatic detection of viral RNA recombination.. Supervised by B. Ó Nualláin.
  Citation Links

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