Publications of the CSL group

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2020

• Article
  M. Girard and T. Bereau. Regulating Lipid Composition Rationalizes Acyl Tail Saturation Homeostasis in Ectotherms. Biophysical Journal 119(5), pp. 892-899.
  Abstract Citation Links
• Article
  M. Boersma, A. Maliutin, S. Sourabh, L. A. Hoogduin, and D. Kandhai. Reducing the complexity of financial networks using network embeddings. Scientific Reports 10, 17045.
  Abstract Citation Links
• Article
  A. M. Shibeko, B. Chopard, A. G. Hoekstra, and M. A. Panteleev. Redistribution of TPA Fluxes in the Presence of PAI-1 Regulates Spatial Thrombolysis. Biophysical Journal 119(3), pp. 638-651.
  Abstract Citation Links
• Article
  O. Har-Shemesh, R. Quax, J. S. Lansing, and P. M. A. Sloot. Questionnaire data analysis using information geometry. Scientific Reports 10, 8633.
  Abstract Citation Links
• Article
  A. H. R. Koch, S. Morsbach, T. Bereau, G. Lévêque, H.-J. Butt, M. Deserno, K. Landfester, and G. Fytas. Probing Nanoparticle/Membrane Interactions by Combining Amphiphilic Diblock Copolymer Assembly and Plasmonics. The journal of Physical Chemistry. B 124(5), pp. 742-750.
  Abstract Citation Links
• Proceedings
  V. V. Krzhizhanovskaya, G. Závodszky, M. Lees, J. Dongarra, P. M. A. Sloot, S. Brissos, and J. Teixeira. Preface. In: Computational Science – ICCS 2020. ISBN 9783030503710. I, pp. v-vi.
  Citation Links
• Proceedings
  V. V. Krzhizhanovskaya, G. Závodszky, M. Lees, J. Dongarra, P. M. A. Sloot, S. Brissos, and J. Teixeira. Preface. In: Computational Science – ICCS 2020. ISBN 9783030504267. V, pp. v-vi.
  Citation Links
• Proceedings
  V. V. Krzhizhanovskaya, G. Závodszky, M. Lees, J. Dongarra, P. M. A. Sloot, S. Brissos, and J. Teixeira. Preface. In: Computational Science – ICCS 2020. ISBN 9783030504205. III, pp. v-vi.
  Citation Links
• Proceedings
  V. V. Krzhizhanovskaya, G. Závodszky, M. Lees, J. Dongarra, P. M. A. Sloot, S. Brissos, and J. Teixeira. Preface. In: Computational Science – ICCS 2020. ISBN 9783030504366. VII, pp. v-vi.
  Citation Links
• Proceedings
  V. V. Krzhizhanovskaya, G. Závodszky, M. Lees, J. Dongarra, P. M. A. Sloot, S. Brissos, and J. Teixeira. Preface. In: Computational Science – ICCS 2020. ISBN 9783030504175. II, pp. v-vi.
  Citation Links
• Proceedings
  V. V. Krzhizhanovskaya, G. Závodszky, M. Lees, J. Dongarra, P. M. A. Sloot, S. Brissos, and J. Teixeira. Preface. In: Computational Science – ICCS 2020. ISBN 9783030504335. VI, pp. v-vi.
  Citation Links
• Proceedings
  V. V. Krzhizhanovskaya, G. Závodszky, M. Lees, J. Dongarra, P. M. A. Sloot, S. Brissos, and J. Teixeira. Preface. In: Computational Science – ICCS 2020. ISBN 9783030504236. IV, pp. v-vi.
  Citation Links
• PhD Thesis
  B. J. M. van Rooij. Platelet adhesion and aggregation in high shear blood flow. ISBN 9789402820287. Supervised by A. G. Hoekstra and G. Závodszky.
  Abstract Citation Links
• Article
  C. Hoffmann, A. Centi, R. Menichetti, and T. Bereau. Molecular dynamics trajectories for 630 coarse-grained drug-membrane permeations. Scientific Data 7, 51.
  Abstract Citation Links
• Proceedings
  J. Kwak, M. H. Lees, W. Cai, and M. E. H. Ong. Modeling helping behavior in emergency evacuations using volunteer’s dilemma game. In: Computational Science – ICCS 2020. ISBN 9783030503710. I, pp. 513-523.
  Abstract Citation Links
• PhD Thesis
  V. Sivadasan. Microstructure dynamics in shear thickening suspensions. ISBN 9789402818611. Supervised by A. G. Hoekstra and D. Bonn.
  Abstract Citation Links
• Proceedings
  A. W. Abcouwer and Emoke Takács. Leadership, Management and Teams: A way of Being Successful. In: Proceedings of the 16th European Conference on Management, Leadership and Governance. ISBN 9781912764778. pp. 239-249.
  Abstract Citation Links
• Article
  O. Severiukhina, S. Kesarev, K. Bochenina, A. Boukhanovsky, M. H. Lees, and P. M. A. Sloot. Large-scale forecasting of information spreading. Journal of Big Data 7, 72.
  Abstract Citation Links
• Article
  C. Scherer, R. Scheid, D. Andrienko, and T. Bereau. Kernel-Based Machine Learning for Efficient Simulations of Molecular Liquids. Journal of Chemical Theory and Computation 16(5), pp. 3194-3204.
  Abstract Citation Links
• Article
  K. de Vries, A. Nikishova, B. Czaja, G. Závodszky, and A. G. Hoekstra. Inverse Uncertainty Quantification of a cell model using a Gaussian Process metamodel. International Journal for Uncertainty Quantification 10(4), pp. 333-349.
  Abstract Citation Links
• Article
  Y. B. Varolgünes, T. Bereau, and J. F. Rudzinski. Interpretable embeddings from molecular simulations using Gaussian mixture variational autoencoders. Machine Learning: Science and Technology 1(1), 015012.
  Abstract Citation Links
• Article
  A. Centi, A. Dutta, S. H. Parekh, and T. Bereau. Inserting Small Molecules across Membrane Mixtures. Biophysical Journal 118(6), pp. 1321-1332.
  Abstract Citation Links
• Article
  P. R. Konduri, H. A. Marquering, E. E. van Bavel, A. Hoekstra, C. B. L. M. Majoie, R. Padmos, and V. Azizi. In-Silico Trials for Treatment of Acute Ischemic Stroke. Frontiers in Neurology 11, 558125.
  Abstract Citation Links
• Article
  O. Metsker, K. Magoev, A. Yakovlev, S. Yanishevskiy, G. Kopanitsa, S. Kovalchuk, and V. V. Krzhizhanovskaya. Identification of risk factors for patients with diabetes: diabetic polyneuropathy case study. BMC Medical Informatics and Decision Making 20, 201.
  Abstract Citation Links
• Article
  B. Csippa, D. Gyürki, G. Závodszky, I. Szikora, and G. Paál. Hydrodynamic Resistance of Intracranial Flow-Diverter Stents. Cardiovascular Engineering and Technology 11(1), pp. 1-13.
  Abstract Citation Links
• Article
  C. Rauer and T. Bereau. Hydration free energies from kernel-based machine learning: Compound-database bias. Journal of Chemical Physics 153(1), 014101.
  Abstract Citation Links
• Proceedings
  Tjula Daelmans, Sophie Hutten, Judith Niks, E. Takács, and A. W. Abcouwer. Future Prospects of the Transitioning Energy. In: Proceedings of the 16th European Conference on Management, Leadership and Governance. ISBN 9781912764778. pp. 57-64.
  Abstract Citation Links
• Article
  C. Liu, J. G. Brandenburg, O. Valsson, K. Kremer, and T. Bereau. Free-energy landscape of polymer-crystal polymorphism. Soft Matter 16(42), pp. 9683-9692.
  Abstract Citation Links
• Article
  J. J. Lever, I. A. van de Leemput, E. Weinans, R. Quax, V. Dakos, E. H. van Nes, J. Bascompte, and M. Scheffer. Foreseeing the future of mutualistic communities beyond collapse. Ecology Letters 23(1), pp. 2-15.
  Abstract Citation Links
• Article
  M. V. Sheraton, G. G. Y. Chiew, V. Melnikov, E. Y. Tan, K. Q. Luo, N. Verma, and P. M. A. Sloot. Emergence of spatio-temporal variations in chemotherapeutic drug efficacy. BMC Cancer 20, 1201.
  Abstract Citation Links
• Proceedings
  L. E. Veen and A. G. Hoekstra. Easing Multiscale Model Design and Coupling with MUSCLE 3. In: Computational Science – ICCS 2020. ISBN 9783030504335. VI, pp. 425-438.
  Abstract Citation Links
• Proceedings
  B. Nannes, R. Quax, H. Ashikaga, M. Hocini, R. Dubois, O. Bernus, and M. Haïssaguerre. Early signs of critical slowing down in heart surface electrograms of ventricular fibrillation victims. In: Computational Science – ICCS 2020. ISBN 9783030504236. IV, pp. 334-347.
  Abstract Citation Links
• Proceedings
  A. Presbitero, R. Quax, V. V. Krzhizhanovskaya, and P. M. A. Sloot. Detecting critical transitions in the human innate immune system post-cardiac surgery. In: Computational Science – ICCS 2020. ISBN 9783030503710. I, pp. 371-384.
  Abstract Citation Links
• Article
  J. W. Barnett, C. R. Bilchak, Y. Wang, B. C. Benicewicz, L. A. Murdock, T. Bereau, and S. K. Kumar. Designing exceptional gas-separation polymer membranes using machine learning. Science Advances 6(20), eaaz4301.
  Abstract Citation Links
• Article
  Zhilian Huang, Eberta Tan, Elaine Lum, Peter Sloot, Bernhard Otto Boehm, and Josip Car. Correction: A Smartphone App to Improve Medication Adherence in Patients With Type 2 Diabetes in Asia: Feasibility Randomized Controlled Trial. JMIR mHealth and uHealth 8(4), e18411.
  Abstract Citation Links
• Article
  C. H. Tan, H.-S. Oh, V. M. Sheraton, E. Mancini, S. C. J. Loo, S. Kjelleberg, P. M. A. Sloot, and S. A. Rice. Convection and the Extracellular Matrix Dictate Inter- and Intra-Biofilm Quorum Sensing Communication in Environmental Systems. Environmental Science and Technology 54(11), p. 6730–6740.
  Abstract Citation Links
• Article
  I. Anagnostou, J. Sanchez Rivero, S. Sourabh, and D. Kandhai. Contagious defaults in a credit portfolio: a Bayesian network approach. Journal of Credit Risk 16(1), pp. 1-26.
  Abstract Citation Links
• Article
  P. J. S. Cardoso, J. M. F. Rodrigues, J. Monteiro, R. Lam, V. V. Krzhizhanovskaya, M. H. Lees, J. Dongarra, and P. M. A. Sloot. Computational Science in the Interconnected World: Selected papers from 2019 International Conference on Computational Science. Journal of Computational Science 47, 101222.
  Citation Links
• Article
  J. F. Rudzinski and T. Bereau. Coarse-grained conformational surface hopping. Journal of Chemical Physics 153(21), 214110.
  Abstract Citation Links
• PhD Thesis
  B. E. Czaja. Cell resolved blood flow modeling with the Lattice Boltzmann method. ISBN 9789464211191. Supervised by A. G. Hoekstra and G. Závodszky.
  Abstract Citation Links
• Article
  D. W. Wright, R. A. Richardson, W. Edeling, J. Lakhlili, R. C. Sinclair, V. Jancauskas, D. Suleimenova, B. Bosak, M. Kulczewski, T. Piontek, P. Kopta, I. Chirca, H. Arabnejad, O. O. Luk, O. Hoenen, J. Węglarz, D. Crommelin, D. Groen, and P. V. Coveney. Building Confidence in Simulation: Applications of EasyVVUQ. Advanced Theory and Simulations 3(8), 1900246.
  Abstract Citation Links
• Article
  J. Burger, D. C. van der Veen, D. J. Robinaugh, R. Quax, H. Riese, R. A. Schoevers, and S. Epskamp. Bridging the gap between complexity science and clinical practice by formalizing idiographic theories: a computational model of functional analysis. BMC Medicine 18, 99.
  Abstract Citation Links
• Article
  B. J. M. van Rooij, G. Závodszky, A. G. Hoekstra, and D. N. Ku. Biorheology of occlusive thrombi formation under high shear: in vitro growth and shrinkage. Scientific Reports 10, 18604.
  Abstract Citation Links
• Article
  D. Roy, D. Bernal, and M. Lees. An exploratory factor analysis model for slum severity index in Mexico City. Urban Studies 57(4), pp. 789-805.
  Abstract Citation Links
• Article
  M. Stieffenhofer, M. Wand, and T. Bereau. Adversarial reverse mapping of equilibrated condensed-phase molecular structures. Machine Learning: Science and Technology 1(4), 045014.
  Abstract Citation Links
• Book
  T. Abcouwer, E. Takács, and O.-P. Banga. Adaptive Information Management. ISBN 9789083045801.
  Abstract Citation
• Article
  P. S. Zun, A. J. Narracott, P. C. Evans, B. J. M. van Rooij, and A. G. Hoekstra. A particle-based model for endothelial cell migration under flow conditions. Biomechanics and Modeling in Mechanobiology 19(2), pp. 681-692.
  Abstract Citation Links
• Article
  G. Závodszky, B. Csippa, G. Paál, and I. Szikora. A novel virtual flow diverter implantation method with realistic deployment mechanics and validated force response. International Journal for Numerical Methods in Biomedical Engineering 36(6), e3340.
  Abstract Citation Links
• Article
  J. R. Helmus, M. H. Lees, and R. van den Hoed. A data driven typology of electric vehicle user types and charging sessions. Transportation Research. Part C, Emerging Technologies 115, 102637.
  Abstract Citation Links
• Proceedings
  B. Czaja, G. Závodszky, and A. Hoekstra. A Heterogeneous Multi-scale Model for Blood Flow. In: Computational Science – ICCS 2020. ISBN 9783030504335. VI, pp. 403-409.
  Abstract Citation Links
• Article
  S. V. Kovalchuk, V. V. Krzhizhanovskaya, and P. M. A. Sloot. 20 years of computational Science. Journal of Computational Science 46, 101187.
  Citation Links

2019

• Proceedings
  H. Spreeuw, S. Madougou, R. van Haren, B. Weel, A. Belloum, and J. Maassen. Unlocking the LOFAR ITA. In: IEEE 15th International Conference on eScience. ISBN 9781728124513. pp. 467-470.
  Abstract Citation Links
• Article
  S. Alowayyed, M. Vassaux, B. Czaja, P. V. Coveney, and A. G. Hoekstra. Towards heterogeneous multi-scale computing on large scale parallel supercomputers. Supercomputing Frontiers and Innovations 6(4), pp. 20-43.
  Abstract Citation Links
• Article
  V. Karbovskii, O. Severiukhina, I. Derevitskii, D. Voloshin, A. Presbitero, and M. Lees. The impact of different obstacles on crowd dynamics. Journal of Computational Science 36, 100893.
  Abstract Citation Links
• PhD Thesis
  V. Sheraton Muniraj. The emergence of biofilms. Supervised by P. M. A. Sloot.
  Abstract Citation Links
• Chapter
  A. Pérez de Alba Ortíz, J. Vreede, and B. Ensing. The Adaptive Path Collective Variable: A Versatile Biasing Approach to Compute the Average Transition Path and Free Energy of Molecular Transitions. In: Biomolecular Simulations. ISBN 9781493996087. p. 255–290.
  Abstract Citation Links
• Article
  I. Vermeulen, J. R. Helmus, M. Lees, and R. van den Hoed. Simulation of future electric vehicle charging behavior—effects of transition from PHEV to FEV. World Electric Vehicle Journal 10(2), 42.
  Abstract Citation Links
• Article
  V. Sivadasan, E. Lorenz, A. G. Hoekstra, and D. Bonn. Shear thickening of dense suspensions: The role of friction. Physics of Fluids 31(10), 103103.
  Abstract Citation Links
• Article
  A. Nikishova and A. G. Hoekstra. Semi-intrusive uncertainty propagation for multiscale models. Journal of Computational Science 35, pp. 80-90.
  Abstract Citation Links
• Article
  A. Nikishova, L. Veen, P. Zun, and A. G. Hoekstra. Semi-intrusive multiscale metamodelling uncertainty quantification with application to a model of in-stent restenosis. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 377(2142), 2018154.
  Abstract Citation Links
• Article
  S. V. Kovalchuk, V. V. Krzhizhanovskaya, Y. Shi, H. Fua, M. H. Lees, J. Dongarra, and P. M. A. Sloot. Science at the intersection of data, modelling, and computation. Journal of Computational Science 34, pp. 117-119.
  Citation Links
• Article
  I. Anagnostou and D. Kandhai. Risk Factor Evolution for Counterparty Credit Risk under a Hidden Markov Model. Risks 7(2), 66.
  Abstract Citation Links
• Article
  G. Závodszky, B. van Rooij, B. Czaja, V. Azizi, D. de Kanter, and A. G. Hoekstra. Red blood cell and platelet diffusivity and margination in the presence of cross-stream gradients in blood flows. Physics of Fluids 31(3), 031903.
  Abstract Citation Links
• Chapter
  F. Castiglione, E. Mancini, M. Pedicini, and A. S. Jarrah. Quantitative Modelling Approaches. In: Encyclopedia of Bioinformatics and Computational Biology. ISBN 9780128114322. 2, pp. 874-883.
  Abstract Citation Links
• Proceedings
  J. M. F. Rodrigues, P. J. S. Cardoso, J. Monteiro, R. Lam, V. V. Krzhizhanovskaya, M. Lees, J. J. Dongarra, and P. M. A. Sloot. Preface. In: Computational Science – ICCS 2019. ISBN 9783030227340. I, pp. v-vi.
  Citation Links
• Article
  M. V. Sheraton, V. R. Melnikov, and P. M. A. Sloot. Prediction and quantification of bacterial biofilm detachment using Glazier-Graner–Hogeweg method based model simulations. Journal of Theoretical Biology 482, 109994.
  Abstract Citation Links
• Article
  S. Alowayyed, T. Piontek, J. L. Suter, O. Hoenen, D. Groen, O. Luk, B. Bosak, P. Kopta, K. Kurowski, O. Perks, K. Brabazon, V. Jancauskas, D. Coster, P. V. Coveney, and A. G. Hoekstra. Patterns for High Performance Multiscale Computing. Future Generation Computer Systems 91, pp. 335-346.
  Abstract Citation Links
• Proceedings
  V. Azizi Tarksalooyeh, G. Závodszky, and A. G. Hoekstra. Optimizing Parallel Performance of the Cell Based Blood Flow Simulation Software HemoCell. In: Computational Science – ICCS 2019. ISBN 9783030227449. III, pp. 537-547.
  Abstract Citation Links
• Article
  A. G. Hoekstra, S. Portegies Zwart, and P. V. Coveney. Multiscale modelling, simulation and computing: from the desktop to the exascale. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 377(2142), 20180355.
  Abstract Citation Links
• Article
  A. G. Hoekstra, B. Chopard, D. Coster, S. Portegies Zwart, and P. V. Coveney. Multiscale computing for science and engineering in the era of exascale performance. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 377(2142), 20180144.
  Abstract Citation Links
• Article
  P. Berg, S. Voß, G. Janiga, S. Saalfeld, A. W. Bergersen, K. Valen-Sendstad, J. Bruening, L. Goubergrits, A. Spuler, T. L. Chiu, A. C. O. Tsang, G. Copelli, B. Csippa, G. Paál, G. Závodszky, F. J. Detmer, B. J. Chung, J. R. Cebral, S. Fujimura, H. Takao, C. Karmonik, S. Elias, N. M. Cancelliere, M. Najafi, D. A. Steinman, V. M. Pereira, S. Piskin, E. A. Finol, M. Pravdivtseva, P. Velvaluri, H. Rajabzadeh-Oghaz, N. Paliwal, H. Meng, S. Seshadhri, S. Venguru, M. Shojima, S. Sindeev, S. Frolov, Y. Qian, Y.-A. Wu, K. D. Carlson, D. F. Kallmes, D. Dragomir-Daescu, and O. Beuing. Multiple Aneurysms AnaTomy CHallenge 2018 (MATCH)—phase II: rupture risk assessment. International Journal of Computer Assisted Radiology and Surgery 14(10), p. 1795–1804.
  Abstract Citation Links
• Article
  W. R. J. Vermeulen, D. Roy, and R. Quax. Modelling the Influence of Regional Identity on Human Migration. Urban Science 3(3), 78.
  Abstract Citation Links
• Article
  V. Prana, P. Tieri, M. C. Palumbo, E. Mancini, and F. Castiglione. Modeling the effect of high calorie diet on the interplay between adipose tissue, inflammation and diabetes. Computational and Mathematical Methods in Medicine 2019, 7525834.
  Abstract Citation Links
• Proceedings
  S. Shakeri, V. Maccatrozzo, L. Veen, R. Bakhshi, L. Gommans, C. de Laat, and P. Grosso. Modeling and matching digital data marketplace policies. In: IEEE 15th International Conference on eScience. ISBN 9781728124513. pp. 570-577.
  Abstract Citation Links
• Article
  Z. Huang, E. Lum, G. Jimenez, M. Semwal, P. Sloot, and J. Car. Medication management support in diabetes: a systematic assessment of diabetes self-management apps. BMC Medicine 17, 127.
  Abstract Citation Links
• Article
  E. Caroselli, F. Gizzi, F. Prada, C. Marchini, V. Airi, J. Kaandorp, G. Falini, Z. Dubinsky, and S. Goffredo. Low and variable pH decreases recruitment efficiency in populations of a temperate coral naturally present at CO2 vent. Limnology and Oceanography 64(3), pp. 1059-1069.
  Abstract Citation Links
• Article
  P. S. Zun, A. J. Narracott, C. Chiastra, J. Gunn, and A. G. Hoekstra. Location-Specific Comparison Between a 3D In-Stent Restenosis Model and Micro-CT and Histology Data from Porcine In Vivo Experiments. Cardiovascular Engineering and Technology 10(4), p. 568–582.
  Abstract Citation Links
• Proceedings
  D. Groen, R. A. Richardson, D. W. Wright, V. Jancauskas, R. Sinclair, P. Karlshoefer, M. Vassaux, H. Arabnejad, T. Piontek, P. Kopta, B. Bosak, J. Lakhlili, O. Hoenen, D. Suleimenova, W. Edeling, D. Crommelin, A. Nikishova, and P. V. Coveney. Introducing VECMAtk - Verification, Validation and Uncertainty Quantification for Multiscale and HPC Simulations. In: Computational Science – ICCS 2019 . ISBN 9783030227470. IV, pp. 479-492.
  Abstract Citation Links
• Article
  J. Runge, S. Bathiany, E. Bollt, G. Camps-Valls, D. Coumou, E. Deyle, C. Glymour, M. Kretschmer, M. D. Mahecha, J. Muñoz-Marí, E. H. van Nes, J. Peters, R. Quax, M. Reichstein, M. Scheffer, B. Schölkopf, P. Spirtes, G. Sugihara, J. Sun, K. Zhang, and J. Zscheischler. Inferring causation from time series in Earth system sciences. Nature Communications 10, 2553.
  Abstract Citation Links
• Article
  E. Ranguelova, B. Weel, D. Roy, M. Kuffer, K. Pfeffer, and M. Lees. Image Based Classification of Slums, Built-Up and Non-Built-Up Areas in Kalyan and Bangalore, India. European Journal of Remote Sensing 52(S1), pp. 40-61.
  Abstract Citation Links
• Article
  B. J. M. van Rooij, G. Závodszky, V. W. Azizi Tarksalooyeh, and A. G. Hoekstra. Identifying the start of a platelet aggregate by the shear rate and the cell-depleted layer. Journal of the Royal Society Interface 16(159), 20190148.
  Abstract Citation Links
• Article
  A. Presbitero, E. Mancini, F. Castiglione, V. V. Krzhizhanovskaya, and R. Quax. Game of neutrophils: modeling the balance between apoptosis and necrosis. BMC Bioinformatics 20(Supplement 6), 475.
  Abstract Citation Links
• Article
  E. Weinans, J. J. Lever, S. Bathiany, R. Quax, J. Bascompte, E. H. van Nes, M. Scheffer, and I. A. van de Leemput. Finding the direction of lowest resilience in multivariate complex systems. Journal of the Royal Society Interface 16(159), 20190629.
  Abstract Citation Links
• Article
  Olivia Chu, V. V. Vasconcelos, and Corina Tarnita. Evolutionary Dynamics in a Group Population Structure with Barriers to Group Entry. APS Meeting Abstracts 64(2), B63.00008.
  Abstract Citation Links
• Article
  S. Georgievska, P. Rutten, J. Amoraal, E. Ranguelova, R. Bakhshi, B. L. de Vries, M. Lees, and S. Klous. Detecting high indoor crowd density with Wi-Fi localization: a statistical mechanics approach. Journal of Big Data 6, 31.
  Abstract Citation Links
• Article
  J. Wang, M. Kuffer, D. Roy, and K. Pfeffer. Deprivation pockets through the lens of convolutional neural networks. Remote Sensing of the Environment 234, 111448.
  Abstract Citation Links
• Article
  M. G. M. Olde Rikkert, P. P. M. van Zuijlen, M. de Kleuver, A. van Reekum, A. G. Hoekstra, and P. M. A. Sloot. Complexiteit van ziekten. Nederlands Tijdschrift voor Geneeskunde 163(35), D3970.
  Abstract Citation Links
• Chapter
  G. Moysiadis, I. Anagnostou, and D. Kandhai. Calibrating the Mean-Reversion Parameter in the Hull-White Model Using Neural Networks. In: ECML PKDD 2018 Workshops. ISBN 9783030134631. pp. 23-36.
  Abstract Citation Links
• Article
  P. Dutta, L. Ma, Y. Ali, P. M. A. Sloot, and J. Zheng. Boolean network modeling of β-cell apoptosis and insulin resistance in type 2 diabetes mellitus. BMC Systems Biology 13(Supplement 2), 36.
  Abstract Citation Links
• Proceedings
  K. van der Zwet, A. I. Barros, T. M. van Engers, and B. van der Vecht. An agent-based model for emergent opponent behavior. In: Computational Science – ICCS 2019. ISBN 9783030227418. II, pp. 290-303.
  Abstract Citation Links
• Article
  Z. Huang, E. Tan, E. Lum, P. Sloot, B. O. Boehm, and J. Car. A Smartphone App to Improve Medication Adherence in Patients With Type 2 Diabetes in Asia. JMIR mHealth and uHealth 7(9), e14914.
  Abstract Citation Links
• PhD Thesis
  P. Zun. 3D modelling of in-stent restenosis. Supervised by A. G. Hoekstra, A. V. Boukhanovsky, and A. Svitenkov.
  Abstract Citation Links

2018

• Proceedings
  M. Glombek, J. R. Helmus, M. Lees, R. van den Hoed, and R. Quax. Vulnerability Of Charging Infrastructure, A Novel Approach For Improving Charging Station Deployment. In: Proceedings of 7th Transport Research Arena TRA 2018.
  Abstract Citation Links
• Article
  A. G. Hoekstra, E. T. van Bavel, M. Siebes, F. Gijsen, and L. Geris. Virtual physiological human 2016: translating the virtual physiological human to the clinic. Interface Focus 8(1), 20170067.
  Citation Links
• Article
  A. V. Boukhanovsky, V. V. Krzhizhanovskaya, and M. Bubak. Urgent computing for decision support in critical situations. Future Generation Computer Systems 79(1), pp. 111-113.
  Abstract Citation Links
• Proceedings
  J. S. Y. Tan, G. Závodszky, and P. M. A. Sloot. Understanding Malaria Induced Red Blood Cell Deformation Using Data-Driven Lattice Boltzmann Simulations. In: Computational Science – ICCS 2018. ISBN 9783319936987. pp. 392-403.
  Abstract Citation Links
• Article
  A. Nikishova, L. Veen, P. Zun, and A. G. Hoekstra. Uncertainty Quantification of a Multiscale Model for In-Stent Restenosis. Cardiovascular Engineering and Technology 9(4), pp. 761-774.
  Abstract Citation Links
• PhD Thesis
  A. M. Abdol. Toward reverse engineering spatiotemporal gene regulatory networks of Nematostella vectensis. ISBN 9789402810110. Supervised by P. M. A. Sloot and J. A. Kaandorp.
  Abstract Citation Links
• Article
  S. V. Kovalchuk, V. V. Krzhizhanovskaya, P. Koumoutsakos, E. Chatzi, M. H. Lees, J. Dongarra, and P. M. A. Sloot. The art of computational science: Bridging gaps – forming alloys. Journal of Computational Science 26, pp. 190-192.
  Citation Links
• Article
  A. G. Hoekstra, F. van de Vosse, and O. Röhrle. The Virtual Physiological Human Conference 2016. Journal of Computational Science 24, pp. 65-67.
  Citation Links

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