-
Article
D. Roy and M. Lees.
Understanding resilience in slums using an agent-based model.
Computers, Environment and Urban Systems
80, 101458.
-
Article
J. Uleman, R. J. F. Melis, A. Hoekstra, R. Quax, and M. G. M. Olde Rikkert.
Uncovering the multicausality of Alzheimer’s disease: A systems modeling approach.
Alzheimer's & Dementia
16(S10), e041105.
-
PhD Thesis
-
Article
A. Taberna, T. Filatova, D. Roy, and B. Noll.
Tracing resilience, social dynamics and behavioral change: a review of agent-based flood risk models.
Socio-Environmental Systems Modelling
2, 17938.
-
Article
B. Czaja, M. Gutierrez, G. Závodszky, D. de Kanter, A. Hoekstra, and O. Eniola-Adefeso.
The influence of red blood cell deformability on hematocrit profiles and platelet margination.
PLoS Computational Biology
16(3), e1007716.
-
Article
-
Article
L. Crielaard, P. Dutta, R. Quax, M. Nicolaou, N. Merabet, K. Stronks, and P. M. A. Sloot.
Social norms and obesity prevalence: From cohort to system dynamics models.
Obesity Reviews
21(9), e13044.
-
Article
A. Nikishova, G. E. Comi, and A. G. Hoekstra.
Sensitivity analysis based dimension reduction of multiscale models.
Mathematics and Computers in Simulation
170, pp. 205-220.
-
Proceedings
I. Derevitskii, N. Kogtikov, M. H. Lees, W. Cai, and M. E. H. Ong.
Risk-based AED placement - Singapore case.
In:
Computational Science – ICCS 2020.
ISBN
9783030504236.
IV, pp. 577-590.
-
PhD Thesis
I. Anagnostou.
Risk management in trading activities through the lens of complex systems theory.
ISBN
9789464211009.
Supervised by
B. D. Kandhai and A. G. Hoekstra.
-
Article
M. Girard and T. Bereau.
Regulating Lipid Composition Rationalizes Acyl Tail Saturation Homeostasis in Ectotherms.
Biophysical Journal
119(5), pp. 892-899.
-
Article
M. Boersma, A. Maliutin, S. Sourabh, L. A. Hoogduin, and D. Kandhai.
Reducing the complexity of financial networks using network embeddings.
Scientific Reports
10, 17045.
-
Article
A. M. Shibeko, B. Chopard, A. G. Hoekstra, and M. A. Panteleev.
Redistribution of TPA Fluxes in the Presence of PAI-1 Regulates Spatial Thrombolysis.
Biophysical Journal
119(3), pp. 638-651.
-
Article
O. Har-Shemesh, R. Quax, J. S. Lansing, and P. M. A. Sloot.
Questionnaire data analysis using information geometry.
Scientific Reports
10, 8633.
-
Article
A. H. R. Koch, S. Morsbach, T. Bereau, G. Lévêque, H.-J. Butt, M. Deserno, K. Landfester, and G. Fytas.
Probing Nanoparticle/Membrane Interactions by Combining Amphiphilic Diblock Copolymer Assembly and Plasmonics.
The journal of Physical Chemistry. B
124(5), pp. 742-750.
-
Proceedings
-
Proceedings
-
Proceedings
-
Proceedings
-
Proceedings
-
Proceedings
-
Proceedings
-
PhD Thesis
B. J. M. van Rooij.
Platelet adhesion and aggregation in high shear blood flow.
ISBN
9789402820287.
Supervised by
A. G. Hoekstra and G. Závodszky.
-
Article
C. Hoffmann, A. Centi, R. Menichetti, and T. Bereau.
Molecular dynamics trajectories for 630 coarse-grained drug-membrane permeations.
Scientific Data
7, 51.
-
Proceedings
J. Kwak, M. H. Lees, W. Cai, and M. E. H. Ong.
Modeling helping behavior in emergency evacuations using volunteer’s dilemma game.
In:
Computational Science – ICCS 2020.
ISBN
9783030503710.
I, pp. 513-523.
-
PhD Thesis
V. Sivadasan.
Microstructure dynamics in shear thickening suspensions.
ISBN
9789402818611.
Supervised by
A. G. Hoekstra and D. Bonn.
-
Proceedings
A. W. Abcouwer and Emoke Takács.
Leadership, Management and Teams: A way of Being Successful.
In: Proceedings of the 16th European Conference on Management, Leadership and Governance.
ISBN 9781912764778.
pp. 239-249.
-
Article
O. Severiukhina, S. Kesarev, K. Bochenina, A. Boukhanovsky, M. H. Lees, and P. M. A. Sloot.
Large-scale forecasting of information spreading.
Journal of Big Data
7, 72.
-
Article
C. Scherer, R. Scheid, D. Andrienko, and T. Bereau.
Kernel-Based Machine Learning for Efficient Simulations of Molecular Liquids.
Journal of Chemical Theory and Computation
16(5), pp. 3194-3204.
-
Article
K. de Vries, A. Nikishova, B. Czaja, G. Závodszky, and A. G. Hoekstra.
Inverse Uncertainty Quantification of a cell model using a Gaussian Process metamodel.
International Journal for Uncertainty Quantification
10(4), pp. 333-349.
-
Article
Y. B. Varolgünes, T. Bereau, and J. F. Rudzinski.
Interpretable embeddings from molecular simulations using Gaussian mixture variational autoencoders.
Machine Learning: Science and Technology
1(1), 015012.
-
Article
A. Centi, A. Dutta, S. H. Parekh, and T. Bereau.
Inserting Small Molecules across Membrane Mixtures.
Biophysical Journal
118(6), pp. 1321-1332.
-
Article
P. R. Konduri, H. A. Marquering, E. E. van Bavel, A. Hoekstra, C. B. L. M. Majoie, R. Padmos, and V. Azizi.
In-Silico Trials for Treatment of Acute Ischemic Stroke.
Frontiers in Neurology
11, 558125.
-
Article
O. Metsker, K. Magoev, A. Yakovlev, S. Yanishevskiy, G. Kopanitsa, S. Kovalchuk, and V. V. Krzhizhanovskaya.
Identification of risk factors for patients with diabetes: diabetic polyneuropathy case study.
BMC Medical Informatics and Decision Making
20, 201.
-
Article
B. Csippa, D. Gyürki, G. Závodszky, I. Szikora, and G. Paál.
Hydrodynamic Resistance of Intracranial Flow-Diverter Stents.
Cardiovascular Engineering and Technology
11(1), pp. 1-13.
-
Article
C. Rauer and T. Bereau.
Hydration free energies from kernel-based machine learning: Compound-database bias.
Journal of Chemical Physics
153(1), 014101.
-
Proceedings
Tjula Daelmans, Sophie Hutten, Judith Niks, E. Takács, and A. W. Abcouwer.
Future Prospects of the Transitioning Energy.
In: Proceedings of the 16th European Conference on Management, Leadership and Governance.
ISBN 9781912764778.
pp. 57-64.
-
Article
C. Liu, J. G. Brandenburg, O. Valsson, K. Kremer, and T. Bereau.
Free-energy landscape of polymer-crystal polymorphism.
Soft Matter
16(42), pp. 9683-9692.
-
Article
J. J. Lever, I. A. van de Leemput, E. Weinans, R. Quax, V. Dakos, E. H. van Nes, J. Bascompte, and M. Scheffer.
Foreseeing the future of mutualistic communities beyond collapse.
Ecology Letters
23(1), pp. 2-15.
-
Article
M. V. Sheraton, G. G. Y. Chiew, V. Melnikov, E. Y. Tan, K. Q. Luo, N. Verma, and P. M. A. Sloot.
Emergence of spatio-temporal variations in chemotherapeutic drug efficacy.
BMC Cancer
20, 1201.
-
Proceedings
L. E. Veen and A. G. Hoekstra.
Easing Multiscale Model Design and Coupling with MUSCLE 3.
In:
Computational Science – ICCS 2020.
ISBN
9783030504335.
VI, pp. 425-438.
-
Proceedings
B. Nannes, R. Quax, H. Ashikaga, M. Hocini, R. Dubois, O. Bernus, and M. Haïssaguerre.
Early signs of critical slowing down in heart surface electrograms of ventricular fibrillation victims.
In:
Computational Science – ICCS 2020.
ISBN
9783030504236.
IV, pp. 334-347.
-
Proceedings
A. Presbitero, R. Quax, V. V. Krzhizhanovskaya, and P. M. A. Sloot.
Detecting critical transitions in the human innate immune system post-cardiac surgery.
In:
Computational Science – ICCS 2020.
ISBN
9783030503710.
I, pp. 371-384.
-
Article
J. W. Barnett, C. R. Bilchak, Y. Wang, B. C. Benicewicz, L. A. Murdock, T. Bereau, and S. K. Kumar.
Designing exceptional gas-separation polymer membranes using machine learning.
Science Advances
6(20), eaaz4301.
-
Article
Zhilian Huang, Eberta Tan, Elaine Lum, Peter Sloot, Bernhard Otto Boehm, and Josip Car.
Correction: A Smartphone App to Improve Medication Adherence in Patients With Type 2 Diabetes in Asia: Feasibility Randomized Controlled Trial.
JMIR mHealth and uHealth
8(4), e18411.
-
Article
C. H. Tan, H.-S. Oh, V. M. Sheraton, E. Mancini, S. C. J. Loo, S. Kjelleberg, P. M. A. Sloot, and S. A. Rice.
Convection and the Extracellular Matrix Dictate Inter- and Intra-Biofilm Quorum Sensing Communication in Environmental Systems.
Environmental Science and Technology
54(11), p. 6730–6740.
-
Article
I. Anagnostou, J. Sanchez Rivero, S. Sourabh, and D. Kandhai.
Contagious defaults in a credit portfolio: a Bayesian network approach.
Journal of Credit Risk
16(1), pp. 1-26.
-
Article
P. J. S. Cardoso, J. M. F. Rodrigues, J. Monteiro, R. Lam, V. V. Krzhizhanovskaya, M. H. Lees, J. Dongarra, and P. M. A. Sloot.
Computational Science in the Interconnected World: Selected papers from 2019 International Conference on Computational Science.
Journal of Computational Science
47, 101222.
-
Article
J. F. Rudzinski and T. Bereau.
Coarse-grained conformational surface hopping.
Journal of Chemical Physics
153(21), 214110.
-
PhD Thesis
B. E. Czaja.
Cell resolved blood flow modeling with the Lattice Boltzmann method.
ISBN
9789464211191.
Supervised by
A. G. Hoekstra and G. Závodszky.
-
Article
D. W. Wright, R. A. Richardson, W. Edeling, J. Lakhlili, R. C. Sinclair, V. Jancauskas, D. Suleimenova, B. Bosak, M. Kulczewski, T. Piontek, P. Kopta, I. Chirca, H. Arabnejad, O. O. Luk, O. Hoenen, J. Węglarz, D. Crommelin, D. Groen, and P. V. Coveney.
Building Confidence in Simulation: Applications of EasyVVUQ.
Advanced Theory and Simulations
3(8), 1900246.
-
Article
J. Burger, D. C. van der Veen, D. J. Robinaugh, R. Quax, H. Riese, R. A. Schoevers, and S. Epskamp.
Bridging the gap between complexity science and clinical practice by formalizing idiographic theories: a computational model of functional analysis.
BMC Medicine
18, 99.
-
Article
B. J. M. van Rooij, G. Závodszky, A. G. Hoekstra, and D. N. Ku.
Biorheology of occlusive thrombi formation under high shear: in vitro growth and shrinkage.
Scientific Reports
10, 18604.
-
Article
D. Roy, D. Bernal, and M. Lees.
An exploratory factor analysis model for slum severity index in Mexico City.
Urban Studies
57(4), pp. 789-805.
-
Article
M. Stieffenhofer, M. Wand, and T. Bereau.
Adversarial reverse mapping of equilibrated condensed-phase molecular structures.
Machine Learning: Science and Technology
1(4), 045014.
-
Book
T. Abcouwer, E. Takács, and O.-P. Banga.
Adaptive Information Management.
ISBN 9789083045801.
-
Article
P. S. Zun, A. J. Narracott, P. C. Evans, B. J. M. van Rooij, and A. G. Hoekstra.
A particle-based model for endothelial cell migration under flow conditions.
Biomechanics and Modeling in Mechanobiology
19(2), pp. 681-692.
-
Article
G. Závodszky, B. Csippa, G. Paál, and I. Szikora.
A novel virtual flow diverter implantation method with realistic deployment mechanics and validated force response.
International Journal for Numerical Methods in Biomedical Engineering
36(6), e3340.
-
Article
J. R. Helmus, M. H. Lees, and R. van den Hoed.
A data driven typology of electric vehicle user types and charging sessions.
Transportation Research. Part C, Emerging Technologies
115, 102637.
-
Proceedings
B. Czaja, G. Závodszky, and A. Hoekstra.
A Heterogeneous Multi-scale Model for Blood Flow.
In:
Computational Science – ICCS 2020.
ISBN
9783030504335.
VI, pp. 403-409.
-
Article